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Long-Read Amplicon Sequencing of Nitric Oxide Dismutase (nod) Genes Reveal Diverse Oxygenic Denitrifiers in Agricultural Soils and Lake Sediments.

Zhu B, Wang Z, Kanaparthi D, Kublik S, Ge T, Casper P, Schloter M, Lueders T.

Microb Ecol. 2020 Jan 27. doi: 10.1007/s00248-020-01482-0. [Epub ahead of print]


Tissue- and Population-Level Microbiome Analysis of the Wasp Spider Argiope bruennichi Identified a Novel Dominant Bacterial Symbiont.

Sheffer MM, Uhl G, Prost S, Lueders T, Urich T, Bengtsson MM.

Microorganisms. 2019 Dec 19;8(1). pii: E8. doi: 10.3390/microorganisms8010008.


Genome analysis provides insights into microaerobic toluene-degradation pathway of Zoogloea oleivorans BucT.

Táncsics A, Farkas M, Horváth B, Maróti G, Bradford LM, Lueders T, Kriszt B.

Arch Microbiol. 2020 Mar;202(2):421-426. doi: 10.1007/s00203-019-01743-8. Epub 2019 Oct 28.


Nitric Oxide Dismutase (nod) Genes as a Functional Marker for the Diversity and Phylogeny of Methane-Driven Oxygenic Denitrifiers.

Zhu B, Wang J, Bradford LM, Ettwig K, Hu B, Lueders T.

Front Microbiol. 2019 Jul 10;10:1577. doi: 10.3389/fmicb.2019.01577. eCollection 2019.


Dynamics of Hydrology and Anaerobic Hydrocarbon Degrader Communities in A Tar-Oil Contaminated Aquifer.

Pilloni G, Bayer A, Ruth-Anneser B, Fillinger L, Engel M, Griebler C, Lueders T.

Microorganisms. 2019 Feb 9;7(2). pii: E46. doi: 10.3390/microorganisms7020046.


Transcriptome-Stable Isotope Probing Provides Targeted Functional and Taxonomic Insights Into Microaerobic Pollutant-Degrading Aquifer Microbiota.

Bradford LM, Vestergaard G, Táncsics A, Zhu B, Schloter M, Lueders T.

Front Microbiol. 2018 Nov 13;9:2696. doi: 10.3389/fmicb.2018.02696. eCollection 2018.


Editorial: Deep life, kia ora!

Stott M, Lueders T.

FEMS Microbiol Ecol. 2018 Nov 1;94(11). doi: 10.1093/femsec/fiy176. No abstract available.


Stable isotope probing of hypoxic toluene degradation at the Siklós aquifer reveals prominent role of Rhodocyclaceae.

Táncsics A, Szalay AR, Farkas M, Benedek T, Szoboszlay S, Szabó I, Lueders T.

FEMS Microbiol Ecol. 2018 Jun 1;94(6). doi: 10.1093/femsec/fiy088.


Response and recovery of a pristine groundwater ecosystem impacted by toluene contamination - A meso-scale indoor aquifer experiment.

Herzyk A, Fillinger L, Larentis M, Qiu S, Maloszewski P, Hünniger M, Schmidt SI, Stumpp C, Marozava S, Knappett PSK, Elsner M, Meckenstock R, Lueders T, Griebler C.

J Contam Hydrol. 2017 Dec;207:17-30. doi: 10.1016/j.jconhyd.2017.10.004. Epub 2017 Oct 31.


Microbial megacities fueled by methane oxidation in a mineral spring cave.

Karwautz C, Kus G, Stöckl M, Neu TR, Lueders T.

ISME J. 2018 Jan;12(1):87-100. doi: 10.1038/ismej.2017.146. Epub 2017 Sep 26.


Micropredator niche differentiation between bulk soil and rhizosphere of an agricultural soil depends on bacterial prey.

Zhang L, Lueders T.

FEMS Microbiol Ecol. 2017 Sep 1;93(9). doi: 10.1093/femsec/fix103.


Bacteria utilizing plant-derived carbon in the rhizosphere of Triticum aestivum change in different depths of an arable soil.

Uksa M, Buegger F, Gschwendtner S, Lueders T, Kublik S, Kautz T, Athmann M, Köpke U, Munch JC, Schloter M, Fischer D.

Environ Microbiol Rep. 2017 Dec;9(6):729-741. doi: 10.1111/1758-2229.12588. Epub 2017 Oct 20.


Microbiome analysis and confocal microscopy of used kitchen sponges reveal massive colonization by Acinetobacter, Moraxella and Chryseobacterium species.

Cardinale M, Kaiser D, Lueders T, Schnell S, Egert M.

Sci Rep. 2017 Jul 19;7(1):5791. doi: 10.1038/s41598-017-06055-9.


Unexpected Diversity and High Abundance of Putative Nitric Oxide Dismutase (Nod) Genes in Contaminated Aquifers and Wastewater Treatment Systems.

Zhu B, Bradford L, Huang S, Szalay A, Leix C, Weissbach M, Táncsics A, Drewes JE, Lueders T.

Appl Environ Microbiol. 2017 Feb 1;83(4). pii: e02750-16. doi: 10.1128/AEM.02750-16. Print 2017 Feb 15.


The ecology of anaerobic degraders of BTEX hydrocarbons in aquifers.

Lueders T.

FEMS Microbiol Ecol. 2017 Jan;93(1). pii: fiw220. Epub 2016 Nov 2.


Resource Partitioning between Bacteria, Fungi, and Protists in the Detritusphere of an Agricultural Soil.

Kramer S, Dibbern D, Moll J, Huenninghaus M, Koller R, Krueger D, Marhan S, Urich T, Wubet T, Bonkowski M, Buscot F, Lueders T, Kandeler E.

Front Microbiol. 2016 Sep 26;7:1524. eCollection 2016.


Editorial overview: Probing environmental processes and microbiome functions using stable isotopes as smart tracers in analytical biotechnology.

Richnow HH, Lueders T.

Curr Opin Biotechnol. 2016 Oct;41:iv-vii. doi: 10.1016/j.copbio.2016.09.002. Epub 2016 Sep 13. No abstract available.


RNA-stable isotope probing: from carbon flow within key microbiota to targeted transcriptomes.

Lueders T, Dumont MG, Bradford L, Manefield M.

Curr Opin Biotechnol. 2016 Oct;41:83-89. doi: 10.1016/j.copbio.2016.05.001. Epub 2016 Jun 3. Review.


Long-distance electron transfer by cable bacteria in aquifer sediments.

Müller H, Bosch J, Griebler C, Damgaard LR, Nielsen LP, Lueders T, Meckenstock RU.

ISME J. 2016 Aug;10(8):2010-9. doi: 10.1038/ismej.2015.250. Epub 2016 Apr 8.


Anaerobic Microbial Degradation of Hydrocarbons: From Enzymatic Reactions to the Environment.

Rabus R, Boll M, Heider J, Meckenstock RU, Buckel W, Einsle O, Ermler U, Golding BT, Gunsalus RP, Kroneck PM, Krüger M, Lueders T, Martins BM, Musat F, Richnow HH, Schink B, Seifert J, Szaleniec M, Treude T, Ullmann GM, Vogt C, von Bergen M, Wilkes H.

J Mol Microbiol Biotechnol. 2016;26(1-3):5-28. doi: 10.1159/000443997. Epub 2016 Mar 10. Review.


Stable Isotope Probing Approaches to Study Anaerobic Hydrocarbon Degradation and Degraders.

Vogt C, Lueders T, Richnow HH, Krüger M, von Bergen M, Seifert J.

J Mol Microbiol Biotechnol. 2016;26(1-3):195-210. doi: 10.1159/000440806. Epub 2016 Mar 10.


Functional Gene Markers for Fumarate-Adding and Dearomatizing Key Enzymes in Anaerobic Aromatic Hydrocarbon Degradation in Terrestrial Environments.

von Netzer F, Kuntze K, Vogt C, Richnow HH, Boll M, Lueders T.

J Mol Microbiol Biotechnol. 2016;26(1-3):180-94. doi: 10.1159/000441946. Epub 2016 Mar 10. Review.


Selective elimination of bacterial faecal indicators in the Schmutzdecke of slow sand filtration columns.

Pfannes KR, Langenbach KM, Pilloni G, Stührmann T, Euringer K, Lueders T, Neu TR, Müller JA, Kästner M, Meckenstock RU.

Appl Microbiol Biotechnol. 2015 Dec;99(23):10323-32. doi: 10.1007/s00253-015-6882-9. Epub 2015 Aug 12.


Response of bacteria and meiofauna to iron oxide colloids in sediments of freshwater microcosms.

Höss S, Frank-Fahle B, Lueders T, Traunspurger W.

Environ Toxicol Chem. 2015 Nov;34(11):2660-9. doi: 10.1002/etc.3091. Epub 2015 Sep 18.


Exploring the Potential of Stable Isotope (Resonance) Raman Microspectroscopy and Surface-Enhanced Raman Scattering for the Analysis of Microorganisms at Single Cell Level.

Kubryk P, Kölschbach JS, Marozava S, Lueders T, Meckenstock RU, Niessner R, Ivleva NP.

Anal Chem. 2015 Jul 7;87(13):6622-30. doi: 10.1021/acs.analchem.5b00673. Epub 2015 Jun 9.


Biodegradation: Updating the concepts of control for microbial cleanup in contaminated aquifers.

Meckenstock RU, Elsner M, Griebler C, Lueders T, Stumpp C, Aamand J, Agathos SN, Albrechtsen HJ, Bastiaens L, Bjerg PL, Boon N, Dejonghe W, Huang WE, Schmidt SI, Smolders E, Sørensen SR, Springael D, van Breukelen BM.

Environ Sci Technol. 2015 Jun 16;49(12):7073-81. doi: 10.1021/acs.est.5b00715. Epub 2015 Jun 5. Review.


Impact of hydraulic well restoration on native bacterial communities in drinking water wells.

Karwautz C, Lueders T.

Microbes Environ. 2014;29(4):363-9. doi: 10.1264/jsme2.ME14035. Epub 2014 Oct 2.


Oil biodegradation. Water droplets in oil are microhabitats for microbial life.

Meckenstock RU, von Netzer F, Stumpp C, Lueders T, Himmelberg AM, Hertkorn N, Schmitt-Kopplin P, Harir M, Hosein R, Haque S, Schulze-Makuch D.

Science. 2014 Aug 8;345(6197):673-6. doi: 10.1126/science.1252215. Epub 2014 Aug 7.


Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps.

Kleindienst S, Herbst FA, Stagars M, von Netzer F, von Bergen M, Seifert J, Peplies J, Amann R, Musat F, Lueders T, Knittel K.

ISME J. 2014 Oct;8(10):2029-44. doi: 10.1038/ismej.2014.51. Epub 2014 Apr 10.


Fine-scale degrader community profiling over an aerobic/anaerobic redox gradient in a toluene-contaminated aquifer.

Larentis M, Hoermann K, Lueders T.

Environ Microbiol Rep. 2013 Apr;5(2):225-34. doi: 10.1111/1758-2229.12004. Epub 2012 Nov 4.


Enhanced gene detection assays for fumarate-adding enzymes allow uncovering of anaerobic hydrocarbon degraders in terrestrial and marine systems.

von Netzer F, Pilloni G, Kleindienst S, Krüger M, Knittel K, Gründger F, Lueders T.

Appl Environ Microbiol. 2013 Jan;79(2):543-52. doi: 10.1128/AEM.02362-12. Epub 2012 Nov 2.


Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes.

Pilloni G, Granitsiotis MS, Engel M, Lueders T.

PLoS One. 2012;7(7):e40467. doi: 10.1371/journal.pone.0040467. Epub 2012 Jul 12.


Subsurface microbiology: the life below our feet.

Lueders T, Griebler C, Häggblom M.

FEMS Microbiol Ecol. 2012 Jul;81(1):1. doi: 10.1111/j.1574-6941.2012.01399.x. Epub 2012 May 14. No abstract available.


Identifying fermenting bacteria in anoxic tidal-flat sediments by a combination of microcalorimetry and ribosome-based stable-isotope probing.

Graue J, Kleindienst S, Lueders T, Cypionka H, Engelen B.

FEMS Microbiol Ecol. 2012 Jul;81(1):78-87. doi: 10.1111/j.1574-6941.2011.01282.x. Epub 2012 Jan 9.


The α7β1-integrin accelerates fiber hypertrophy and myogenesis following a single bout of eccentric exercise.

Lueders TN, Zou K, Huntsman HD, Meador B, Mahmassani Z, Abel M, Valero MC, Huey KA, Boppart MD.

Am J Physiol Cell Physiol. 2011 Oct;301(4):C938-46. doi: 10.1152/ajpcell.00515.2010. Epub 2011 Jul 13.


Acetogens and acetoclastic methanosarcinales govern methane formation in abandoned coal mines.

Beckmann S, Lueders T, Krüger M, von Netzer F, Engelen B, Cypionka H.

Appl Environ Microbiol. 2011 Jun;77(11):3749-56. doi: 10.1128/AEM.02818-10. Epub 2011 Apr 1.


Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP.

Pilloni G, von Netzer F, Engel M, Lueders T.

FEMS Microbiol Ecol. 2011 Oct;78(1):165-75. doi: 10.1111/j.1574-6941.2011.01083.x. Epub 2011 Mar 24.


DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment.

Winderl C, Penning H, Netzer Fv, Meckenstock RU, Lueders T.

ISME J. 2010 Oct;4(10):1314-25. doi: 10.1038/ismej.2010.54. Epub 2010 Apr 29.


Enrichment and characterization of a sulfate-reducing toluene-degrading microbial consortium by combining in situ microcosms and stable isotope probing techniques.

Bombach P, Chatzinotas A, Neu TR, Kästner M, Lueders T, Vogt C.

FEMS Microbiol Ecol. 2010 Feb;71(2):237-46. doi: 10.1111/j.1574-6941.2009.00809.x. Epub 2009 Nov 26.


Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47.

Selesi D, Jehmlich N, von Bergen M, Schmidt F, Rattei T, Tischler P, Lueders T, Meckenstock RU.

J Bacteriol. 2010 Jan;192(1):295-306. doi: 10.1128/JB.00874-09.


Functional characterization of an anaerobic benzene-degrading enrichment culture by DNA stable isotope probing.

Herrmann S, Kleinsteuber S, Chatzinotas A, Kuppardt S, Lueders T, Richnow HH, Vogt C.

Environ Microbiol. 2010 Feb;12(2):401-11. doi: 10.1111/j.1462-2920.2009.02077.x. Epub 2009 Oct 16. Erratum in: Environ Microbiol. 2011 Feb;13(2):550.


Desulfitobacterium aromaticivorans sp. nov. and Geobacter toluenoxydans sp. nov., iron-reducing bacteria capable of anaerobic degradation of monoaromatic hydrocarbons.

Kunapuli U, Jahn MK, Lueders T, Geyer R, Heipieper HJ, Meckenstock RU.

Int J Syst Evol Microbiol. 2010 Mar;60(Pt 3):686-95. doi: 10.1099/ijs.0.003525-0. Epub 2009 Aug 5.


Effects of thermal energy discharge on shallow groundwater ecosystems.

Brielmann H, Griebler C, Schmidt SI, Michel R, Lueders T.

FEMS Microbiol Ecol. 2009 Jun;68(3):273-86. doi: 10.1111/j.1574-6941.2009.00674.x.


DNA-based stable isotope probing enables the identification of active bacterial endophytes in potatoes.

Rasche F, Lueders T, Schloter M, Schaefer S, Buegger F, Gattinger A, Hood-Nowotny RC, Sessitsch A.

New Phytol. 2009 Mar;181(4):802-7. doi: 10.1111/j.1469-8137.2008.02744.x.


13C-isotope analyses reveal that chemolithoautotrophic Gamma- and Epsilonproteobacteria feed a microbial food web in a pelagic redoxcline of the central Baltic Sea.

Glaubitz S, Lueders T, Abraham WR, Jost G, Jürgens K, Labrenz M.

Environ Microbiol. 2009 Feb;11(2):326-37. doi: 10.1111/j.1462-2920.2008.01770.x. Epub 2008 Sep 11.


An optimised PCR/T-RFLP fingerprinting approach for the investigation of protistan communities in groundwater environments.

Euringer K, Lueders T.

J Microbiol Methods. 2008 Oct;75(2):262-8. doi: 10.1016/j.mimet.2008.06.012. Epub 2008 Jun 24.


Depth-resolved quantification of anaerobic toluene degraders and aquifer microbial community patterns in distinct redox zones of a tar oil contaminant plume.

Winderl C, Anneser B, Griebler C, Meckenstock RU, Lueders T.

Appl Environ Microbiol. 2008 Feb;74(3):792-801. Epub 2007 Dec 14.


The use of stable isotope probing to identify key iron-reducing microorganisms involved in anaerobic benzene degradation.

Kunapuli U, Lueders T, Meckenstock RU.

ISME J. 2007 Nov;1(7):643-53. Epub 2007 Sep 13.


DNA stable-isotope probing.

Neufeld JD, Vohra J, Dumont MG, Lueders T, Manefield M, Friedrich MW, Murrell JC.

Nat Protoc. 2007;2(4):860-6.


RNA stable-isotope probing.

Whiteley AS, Thomson B, Lueders T, Manefield M.

Nat Protoc. 2007;2(4):838-44.


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