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Items: 26

1.

Statistics of noisy growth with mechanical feedback in elastic tissues.

Damavandi OK, Lubensky DK.

Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5350-5355. doi: 10.1073/pnas.1816100116. Epub 2019 Feb 28.

PMID:
30819899
2.

Robustness of Clocks to Input Noise.

Monti M, Lubensky DK, Ten Wolde PR.

Phys Rev Lett. 2018 Aug 17;121(7):078101. doi: 10.1103/PhysRevLett.121.078101.

PMID:
30169070
3.

Optimal entrainment of circadian clocks in the presence of noise.

Monti M, Lubensky DK, Ten Wolde PR.

Phys Rev E. 2018 Mar;97(3-1):032405. doi: 10.1103/PhysRevE.97.032405.

PMID:
29776095
4.

Anisotropic Müller glial scaffolding supports a multiplex lattice mosaic of photoreceptors in zebrafish retina.

Nagashima M, Hadidjojo J, Barthel LK, Lubensky DK, Raymond PA.

Neural Dev. 2017 Nov 15;12(1):20. doi: 10.1186/s13064-017-0096-z.

5.

Period Robustness and Entrainability of the Kai System to Changing Nucleotide Concentrations.

Paijmans J, Lubensky DK, Ten Wolde PR.

Biophys J. 2017 Jul 11;113(1):157-173. doi: 10.1016/j.bpj.2017.05.048.

6.

Robustness of synthetic oscillators in growing and dividing cells.

Paijmans J, Lubensky DK, Rein Ten Wolde P.

Phys Rev E. 2017 May;95(5-1):052403. doi: 10.1103/PhysRevE.95.052403. Epub 2017 May 8.

PMID:
28618495
7.

A thermodynamically consistent model of the post-translational Kai circadian clock.

Paijmans J, Lubensky DK, Ten Wolde PR.

PLoS Comput Biol. 2017 Mar 15;13(3):e1005415. doi: 10.1371/journal.pcbi.1005415. eCollection 2017 Mar.

8.

Vertex stability and topological transitions in vertex models of foams and epithelia.

Spencer MA, Jabeen Z, Lubensky DK.

Eur Phys J E Soft Matter. 2017 Jan;40(1):2. doi: 10.1140/epje/i2017-11489-4. Epub 2017 Jan 17.

PMID:
28083791
9.

Discrete gene replication events drive coupling between the cell cycle and circadian clocks.

Paijmans J, Bosman M, Ten Wolde PR, Lubensky DK.

Proc Natl Acad Sci U S A. 2016 Apr 12;113(15):4063-8. doi: 10.1073/pnas.1507291113. Epub 2016 Mar 28.

10.

Erratum: Epithelial tricellular junctions act as interphase cell shape sensors to orient mitosis.

Bosveld F, Markova O, Guirao B, Martin C, Wang Z, Pierre A, Balakireva M, Gaugue I, Ainslie A, Christophorou N, Lubensky DK, Minc N, Bellaïche Y.

Nature. 2016 Jun 2;534(7605):138. doi: 10.1038/nature17622. Epub 2016 Mar 16. No abstract available.

PMID:
26982720
11.

Epithelial tricellular junctions act as interphase cell shape sensors to orient mitosis.

Bosveld F, Markova O, Guirao B, Martin C, Wang Z, Pierre A, Balakireva M, Gaugue I, Ainslie A, Christophorou N, Lubensky DK, Minc N, Bellaïche Y.

Nature. 2016 Feb 25;530(7591):495-8. doi: 10.1038/nature16970. Epub 2016 Feb 17. Erratum in: Nature. 2016 Jun 2;534(7605):138.

12.

Patterning the cone mosaic array in zebrafish retina requires specification of ultraviolet-sensitive cones.

Raymond PA, Colvin SM, Jabeen Z, Nagashima M, Barthel LK, Hadidjojo J, Popova L, Pejaver VR, Lubensky DK.

PLoS One. 2014 Jan 21;9(1):e85325. doi: 10.1371/journal.pone.0085325. eCollection 2014.

13.

Exchange of stability as a function of system size in a nonequilibrium system.

Tănase-Nicola S, Lubensky DK.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Oct;86(4 Pt 1):040103. Epub 2012 Oct 10.

PMID:
23214515
14.

Coupling mechanical deformations and planar cell polarity to create regular patterns in the zebrafish retina.

Salbreux G, Barthel LK, Raymond PA, Lubensky DK.

PLoS Comput Biol. 2012;8(8):e1002618. doi: 10.1371/journal.pcbi.1002618. Epub 2012 Aug 23.

15.

A dynamical model of ommatidial crystal formation.

Lubensky DK, Pennington MW, Shraiman BI, Baker NE.

Proc Natl Acad Sci U S A. 2011 Jul 5;108(27):11145-50. doi: 10.1073/pnas.1015302108. Epub 2011 Jun 20.

16.

Robust circadian clocks from coupled protein-modification and transcription-translation cycles.

Zwicker D, Lubensky DK, ten Wolde PR.

Proc Natl Acad Sci U S A. 2010 Dec 28;107(52):22540-5. doi: 10.1073/pnas.1007613107. Epub 2010 Dec 13.

17.

Equilibriumlike behavior in chemical reaction networks far from equilibrium.

Lubensky DK.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jun;81(6 Pt 1):060102. Epub 2010 Jun 11.

PMID:
20866364
18.

Switch and template pattern formation in a discrete reaction-diffusion system inspired by the Drosophila eye.

Pennington MW, Lubensky DK.

Eur Phys J E Soft Matter. 2010 Oct;33(2):129-48. doi: 10.1140/epje/i2010-10647-6. Epub 2010 Sep 23.

19.

An allosteric model of circadian KaiC phosphorylation.

van Zon JS, Lubensky DK, Altena PR, ten Wolde PR.

Proc Natl Acad Sci U S A. 2007 May 1;104(18):7420-5. Epub 2007 Apr 25.

20.

Dynamics of molecular motors with finite processivity on heterogeneous tracks.

Kafri Y, Lubensky DK, Nelson DR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Apr;71(4 Pt 1):041906. Epub 2005 Apr 12.

PMID:
15903700
21.

Dynamics of molecular motors and polymer translocation with sequence heterogeneity.

Kafri Y, Lubensky DK, Nelson DR.

Biophys J. 2004 Jun;86(6):3373-91.

22.

Unzipping kinetics of double-stranded DNA in a nanopore.

Sauer-Budge AF, Nyamwanda JA, Lubensky DK, Branton D.

Phys Rev Lett. 2003 Jun 13;90(23):238101. Epub 2003 Jun 9.

PMID:
12857290
23.

DNA unzipped under a constant force exhibits multiple metastable intermediates.

Danilowicz C, Coljee VW, Bouzigues C, Lubensky DK, Nelson DR, Prentiss M.

Proc Natl Acad Sci U S A. 2003 Feb 18;100(4):1694-9. Epub 2003 Feb 6.

24.

Single molecule statistics and the polynucleotide unzipping transition.

Lubensky DK, Nelson DR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Mar;65(3 Pt 1):031917. Epub 2002 Mar 6.

PMID:
11909119
25.

Pulling pinned polymers and unzipping DNA.

Lubensky DK, Nelson DR.

Phys Rev Lett. 2000 Aug 14;85(7):1572-5.

PMID:
10970557
26.

Driven polymer translocation through a narrow pore.

Lubensky DK, Nelson DR.

Biophys J. 1999 Oct;77(4):1824-38.

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