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Items: 1 to 50 of 121

1.

MaxQuant software for ion mobility enhanced shotgun proteomics.

Prianichnikov N, Koch H, Koch S, Lubeck M, Heilig R, Brehmer S, Fischer R, Cox J.

Mol Cell Proteomics. 2020 Mar 10. pii: mcp.TIR119.001720. doi: 10.1074/mcp.TIR119.001720. [Epub ahead of print]

2.

Disruption of a putative mitochondrial oxaloacetate shuttle protein in Aspergillus carbonarius results in secretion of malic acid at the expense of citric acid production.

Yang L, Linde T, Hossain AH, Lübeck M, Punt PJ, Lübeck PS.

BMC Biotechnol. 2019 Nov 4;19(1):72. doi: 10.1186/s12896-019-0572-0.

3.

Optical Control of Transcription: Genetically Encoded Photoswitchable Variants of T7 RNA Polymerase.

Seifert S, Ehrt C, Lückfeldt L, Lubeck M, Schramm F, Brakmann S.

Chembiochem. 2019 Nov 18;20(22):2813-2817. doi: 10.1002/cbic.201900298. Epub 2019 Oct 22.

PMID:
31192518
4.

cTBS over contralesional homologue areas deteriorates speech output in isolated apraxia of speech after stroke.

Kaufmann BC, Pastore-Wapp M, Lübeck M, Koenig M, Bohlhalter S, Vanbellingen T, Cazzoli D, Nyffeler T.

Brain Stimul. 2019 Jul - Aug;12(4):1069-1071. doi: 10.1016/j.brs.2019.03.024. Epub 2019 Mar 18. No abstract available.

PMID:
30914261
5.

Application of lactic acid bacteria in green biorefineries.

Lübeck M, Lübeck PS.

FEMS Microbiol Lett. 2019 Feb 1;366(3). pii: fnz024. doi: 10.1093/femsle/fnz024. Review.

PMID:
30715346
6.

Online Parallel Accumulation-Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer.

Meier F, Brunner AD, Koch S, Koch H, Lubeck M, Krause M, Goedecke N, Decker J, Kosinski T, Park MA, Bache N, Hoerning O, Cox J, Räther O, Mann M.

Mol Cell Proteomics. 2018 Dec;17(12):2534-2545. doi: 10.1074/mcp.TIR118.000900. Epub 2018 Nov 1.

7.

Isolation and Screening of Cellulolytic Filamentous Fungi.

Lübeck M, Lübeck PS.

Methods Mol Biol. 2018;1796:37-45. doi: 10.1007/978-1-4939-7877-9_3.

PMID:
29856044
8.

Discovery of a Novel Fungus with an Extraordinary β-Glucosidase and Potential for On-Site Production of High Value Products.

Lübeck PS, Lübeck M.

Methods Mol Biol. 2018;1796:25-33. doi: 10.1007/978-1-4939-7877-9_2.

PMID:
29856043
9.

Overexpression of a C4-dicarboxylate transporter is the key for rerouting citric acid to C4-dicarboxylic acid production in Aspergillus carbonarius.

Yang L, Christakou E, Vang J, Lübeck M, Lübeck PS.

Microb Cell Fact. 2017 Mar 14;16(1):43. doi: 10.1186/s12934-017-0660-6.

10.

A comparison of Agrobacterium-mediated transformation and protoplast-mediated transformation with CRISPR-Cas9 and bipartite gene targeting substrates, as effective gene targeting tools for Aspergillus carbonarius.

Weyda I, Yang L, Vang J, Ahring BK, Lübeck M, Lübeck PS.

J Microbiol Methods. 2017 Apr;135:26-34. doi: 10.1016/j.mimet.2017.01.015. Epub 2017 Feb 1.

PMID:
28159628
11.

The global regulator LaeA controls production of citric acid and endoglucanases in Aspergillus carbonarius.

Linde T, Zoglowek M, Lübeck M, Frisvad JC, Lübeck PS.

J Ind Microbiol Biotechnol. 2016 Aug;43(8):1139-47. doi: 10.1007/s10295-016-1781-3. Epub 2016 May 12.

PMID:
27169528
12.

Co-consumption of glucose and xylose for organic acid production by Aspergillus carbonarius cultivated in wheat straw hydrolysate.

Yang L, Lübeck M, Souroullas K, Lübeck PS.

World J Microbiol Biotechnol. 2016 Apr;32(4):57. doi: 10.1007/s11274-016-2025-4. Epub 2016 Feb 29.

PMID:
26925619
13.

Parallel Accumulation-Serial Fragmentation (PASEF): Multiplying Sequencing Speed and Sensitivity by Synchronized Scans in a Trapped Ion Mobility Device.

Meier F, Beck S, Grassl N, Lubeck M, Park MA, Raether O, Mann M.

J Proteome Res. 2015 Dec 4;14(12):5378-87. doi: 10.1021/acs.jproteome.5b00932. Epub 2015 Nov 13.

PMID:
26538118
14.

Enhanced succinic acid production in Aspergillus saccharolyticus by heterologous expression of fumarate reductase from Trypanosoma brucei.

Yang L, Lübeck M, Ahring BK, Lübeck PS.

Appl Microbiol Biotechnol. 2016 Feb;100(4):1799-1809. doi: 10.1007/s00253-015-7086-z. Epub 2015 Oct 31.

PMID:
26521243
15.

Effects of heterologous expression of phosphoenolpyruvate carboxykinase and phosphoenolpyruvate carboxylase on organic acid production in Aspergillus carbonarius.

Yang L, Lübeck M, Lübeck PS.

J Ind Microbiol Biotechnol. 2015 Nov;42(11):1533-45. doi: 10.1007/s10295-015-1688-4. Epub 2015 Sep 24.

16.

The impact of bariatric surgery on quality of life: a systematic review and meta-analysis.

Lindekilde N, Gladstone BP, Lübeck M, Nielsen J, Clausen L, Vach W, Jones A.

Obes Rev. 2015 Aug;16(8):639-51. doi: 10.1111/obr.12294. Epub 2015 Jun 11. Review.

PMID:
26094664
17.

The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics.

Beck S, Michalski A, Raether O, Lubeck M, Kaspar S, Goedecke N, Baessmann C, Hornburg D, Meier F, Paron I, Kulak NA, Cox J, Mann M.

Mol Cell Proteomics. 2015 Jul;14(7):2014-29. doi: 10.1074/mcp.M114.047407. Epub 2015 May 19.

18.

The association between interpersonal problems and treatment outcome in the eating disorders: A systematic review.

Jones A, Lindekilde N, Lübeck M, Clausen L.

Nord J Psychiatry. 2015;69(8):563-73. doi: 10.3109/08039488.2015.1019924. Epub 2015 Mar 13. Review.

PMID:
25768663
19.

Deletion of glucose oxidase changes the pattern of organic acid production in Aspergillus carbonarius.

Yang L, Lübeck M, Lübeck PS.

AMB Express. 2014 Aug 15;4:54. doi: 10.1186/s13568-014-0054-7. eCollection 2014.

20.

Co-cultivation of Trichoderma reesei RutC30 with three black Aspergillus strains facilitates efficient hydrolysis of pretreated wheat straw and shows promises for on-site enzyme production.

Kolasa M, Ahring BK, Lübeck PS, Lübeck M.

Bioresour Technol. 2014 Oct;169:143-148. doi: 10.1016/j.biortech.2014.06.082. Epub 2014 Jul 1.

PMID:
25043347
21.

Fermentation in 24-well plates is an efficient screening platform for filamentous fungi.

Linde T, Hansen NB, Lübeck M, Lübeck PS.

Lett Appl Microbiol. 2014 Aug;59(2):224-30. doi: 10.1111/lam.12268. Epub 2014 Apr 29.

22.

Point mutation of the xylose reductase (XR) gene reduces xylitol accumulation and increases citric acid production in Aspergillus carbonarius.

Weyda I, Lübeck M, Ahring BK, Lübeck PS.

J Ind Microbiol Biotechnol. 2014 Apr;41(4):733-9. doi: 10.1007/s10295-014-1415-6. Epub 2014 Feb 26.

23.

Motivational interventions in the management of HbA1c levels: a systematic review and meta-analysis.

Jones A, Gladstone BP, Lübeck M, Lindekilde N, Upton D, Vach W.

Prim Care Diabetes. 2014 Jul;8(2):91-100. doi: 10.1016/j.pcd.2014.01.009. Epub 2014 Feb 10. Review.

PMID:
24525286
24.

Advancing USER cloning into simpleUSER and nicking cloning.

Hansen NB, Lübeck M, Lübeck PS.

J Microbiol Methods. 2014 Jan;96:42-9. doi: 10.1016/j.mimet.2013.10.018. Epub 2013 Nov 1.

25.

Top-down analysis of 30-80 kDa proteins by electron transfer dissociation time-of-flight mass spectrometry.

Fornelli L, Parra J, Hartmer R, Stoermer C, Lubeck M, Tsybin YO.

Anal Bioanal Chem. 2013 Oct;405(26):8505-14. doi: 10.1007/s00216-013-7267-5. Epub 2013 Aug 10.

PMID:
23934349
26.

Motivation to change in the eating disorders: a systematic review.

Clausen L, Lübeck M, Jones A.

Int J Eat Disord. 2013 Dec;46(8):755-63. doi: 10.1002/eat.22156. Epub 2013 Jul 11. Review.

PMID:
23847134
27.

Fungal Beta-glucosidases: a bottleneck in industrial use of lignocellulosic materials.

Sørensen A, Lübeck M, Lübeck PS, Ahring BK.

Biomolecules. 2013 Sep 3;3(3):612-31. doi: 10.3390/biom3030612.

28.

Identifying and characterizing the most significant β-glucosidase of the novel species Aspergillus saccharolyticus.

Sørensen A, Ahring BK, Lübeck M, Ubhayasekera W, Bruno KS, Culley DE, Lübeck PS.

Can J Microbiol. 2012 Sep;58(9):1035-46. doi: 10.1139/w2012-076. Epub 2012 Aug 20.

PMID:
22906186
29.

Safety and immunogenicity of an HIV-1 gag DNA vaccine with or without IL-12 and/or IL-15 plasmid cytokine adjuvant in healthy, HIV-1 uninfected adults.

Kalams SA, Parker S, Jin X, Elizaga M, Metch B, Wang M, Hural J, Lubeck M, Eldridge J, Cardinali M, Blattner WA, Sobieszczyk M, Suriyanon V, Kalichman A, Weiner DB, Baden LR; NIAID HIV Vaccine Trials Network.

PLoS One. 2012;7(1):e29231. doi: 10.1371/journal.pone.0029231. Epub 2012 Jan 5.

30.

β-glucosidases from a new Aspergillus species can substitute commercial β-glucosidases for saccharification of lignocellulosic biomass.

Sørensen A, Lübeck PS, Lübeck M, Teller PJ, Ahring BK.

Can J Microbiol. 2011 Aug;57(8):638-50. doi: 10.1139/w11-052. Epub 2011 Aug 4.

PMID:
21815831
31.

Identification of expressed genes during infection of Chinese cabbage (Brassica rapa subsp. pekinensis) by Plasmodiophora brassicae.

Sundelin T, Jensen DF, Lübeck M.

J Eukaryot Microbiol. 2011 Jul-Aug;58(4):310-4. doi: 10.1111/j.1550-7408.2011.00551.x. Epub 2011 Apr 25.

PMID:
21518080
32.

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Döhren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gómez-Rodríguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernández-Oñate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lübeck M, Lübeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV.

Genome Biol. 2011;12(4):R40. doi: 10.1186/gb-2011-12-4-r40. Epub 2011 Apr 18.

33.

Aspergillus saccharolyticus sp. nov., a black Aspergillus species isolated in Denmark.

Sørensen A, Lübeck PS, Lübeck M, Nielsen KF, Ahring BK, Teller PJ, Frisvad JC.

Int J Syst Evol Microbiol. 2011 Dec;61(Pt 12):3077-83. doi: 10.1099/ijs.0.029884-0. Epub 2011 Feb 18.

PMID:
21335500
34.

Mineralization of the metre-long biosilica structures of glass sponges is templated on hydroxylated collagen.

Ehrlich H, Deutzmann R, Brunner E, Cappellini E, Koon H, Solazzo C, Yang Y, Ashford D, Thomas-Oates J, Lubeck M, Baessmann C, Langrock T, Hoffmann R, Wörheide G, Reitner J, Simon P, Tsurkan M, Ereskovsky AV, Kurek D, Bazhenov VV, Hunoldt S, Mertig M, Vyalikh DV, Molodtsov SL, Kummer K, Worch H, Smetacek V, Collins MJ.

Nat Chem. 2010 Dec;2(12):1084-8. doi: 10.1038/nchem.899. Epub 2010 Nov 23.

PMID:
21107374
35.

In Planta Quantification of Plasmodiophora brassicae Using Signature Fatty Acids and Real-Time PCR.

Sundelin T, Christensen CB, Larsen J, Møller K, Lübeck M, Bødker L, Jensen B.

Plant Dis. 2010 Apr;94(4):432-438. doi: 10.1094/PDIS-94-4-0432.

PMID:
30754524
36.

Universally Primed-PCR indicates geographical variation of Peronospora farinosa ex. Chenopodium quinoa.

Danielsen S, Lübeck M.

J Basic Microbiol. 2010 Feb;50(1):104-9. doi: 10.1002/jobm.200900019.

PMID:
20175119
37.

Rhizobacterially induced protection of watermelon against Didymella bryoniae.

Nga NT, Giau NT, Long NT, Lübeck M, Shetty NP, de Neergaard E, Thuy TT, Kim PV, Jørgensen HJ.

J Appl Microbiol. 2010 Aug;109(2):567-82. doi: 10.1111/j.1365-2672.2010.04685.x. Epub 2010 Jan 23.

38.

Morphological and molecular characterization of the causal agent of downy mildew on Quinoa (Chenopodium quinoa).

Choi YJ, Danielsen S, Lübeck M, Hong SB, Delhey R, Shin HD.

Mycopathologia. 2010 May;169(5):403-12. doi: 10.1007/s11046-010-9272-y. Epub 2010 Jan 27.

PMID:
20101524
39.

Fusarium spp. associated with rice Bakanae: ecology, genetic diversity, pathogenicity and toxigenicity.

Wulff EG, Sørensen JL, Lübeck M, Nielsen KF, Thrane U, Torp J.

Environ Microbiol. 2010 Mar;12(3):649-57. doi: 10.1111/j.1462-2920.2009.02105.x. Epub 2009 Nov 25.

PMID:
20002135
40.

De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation.

Bertsch A, Leinenbach A, Pervukhin A, Lubeck M, Hartmer R, Baessmann C, Elnakady YA, Müller R, Böcker S, Huber CG, Kohlbacher O.

Electrophoresis. 2009 Nov;30(21):3736-47. doi: 10.1002/elps.200900332.

PMID:
19862751
41.

Proteome analysis of Sorangium cellulosum employing 2D-HPLC-MS/MS and improved database searching strategies for CID and ETD fragment spectra.

Leinenbach A, Hartmer R, Lubeck M, Kneissl B, Elnakady YA, Baessmann C, Müller R, Huber CG.

J Proteome Res. 2009 Sep;8(9):4350-61. doi: 10.1021/pr9004647.

PMID:
19634914
42.

Data-dependent electron transfer dissociation of large peptides and medium size proteins in a QTOF instrument on a liquid chromatography timescale.

Hartmer RG, Kaplan DA, Stoermer C, Lubeck M, Park MA.

Rapid Commun Mass Spectrom. 2009 Aug;23(15):2273-82. doi: 10.1002/rcm.4145.

PMID:
19575399
43.

Community composition, host range and genetic structure of the fungal entomopathogen Beauveria in adjoining agricultural and seminatural habitats.

Meyling NV, Lübeck M, Buckley EP, Eilenberg J, Rehner SA.

Mol Ecol. 2009 Mar;18(6):1282-93. doi: 10.1111/j.1365-294X.2009.04095.x. Epub 2009 Feb 17.

PMID:
19226319
44.

Safety and immunogenicity of a CTL multiepitope peptide vaccine for HIV with or without GM-CSF in a phase I trial.

Spearman P, Kalams S, Elizaga M, Metch B, Chiu YL, Allen M, Weinhold KJ, Ferrari G, Parker SD, McElrath MJ, Frey SE, Fuchs JD, Keefer MC, Lubeck MD, Egan M, Braun R, Eldridge JH, Haynes BF, Corey L; NIAID HIV Vaccine Trials Network.

Vaccine. 2009 Jan 7;27(2):243-9. doi: 10.1016/j.vaccine.2008.10.051. Epub 2008 Nov 7.

45.

An N-acetyl-beta-D-glucosaminidase gene, cr-nag1, from the biocontrol agent Clonostachys rosea is up-regulated in antagonistic interactions with Fusarium culmorum.

Mamarabadi M, Jensen DF, Lübeck M.

Mycol Res. 2009 Jan;113(Pt 1):33-43. doi: 10.1016/j.mycres.2008.07.005. Epub 2008 Jul 15.

PMID:
18675351
46.

Three endochitinase-encoding genes identified in the biocontrol fungus Clonostachys rosea are differentially expressed.

Mamarabadi M, Jensen B, Lübeck M.

Curr Genet. 2008 Aug;54(2):57-70. doi: 10.1007/s00294-008-0199-5. Epub 2008 Jun 24.

PMID:
18574585
47.

Real-time RT-PCR expression analysis of chitinase and endoglucanase genes in the three-way interaction between the biocontrol strain Clonostachys rosea IK726, Botrytis cinerea and strawberry.

Mamarabadi M, Jensen B, Jensen DF, Lübeck M.

FEMS Microbiol Lett. 2008 Aug;285(1):101-10. doi: 10.1111/j.1574-6968.2008.01228.x. Epub 2008 Jun 28.

48.

Histopathological studies of sclerotia of phytopathogenic fungi parasitized by a GFP transformed Trichoderma virens antagonistic strain.

Sarrocco S, Mikkelsen L, Vergara M, Jensen DF, Lübeck M, Vannacci G.

Mycol Res. 2006 Feb;110(Pt 2):179-87. Epub 2005 Oct 25.

PMID:
16388938
49.

First Report of Anthracnose Fruit Rot Caused by Colletotrichum acutatum on Strawberry in Denmark.

Sundelin T, Schiller M, Lübeck M, Jensen DF, Paaske K, Petersen BD.

Plant Dis. 2005 Apr;89(4):432. doi: 10.1094/PD-89-0432B.

PMID:
30795468
50.

Delineation of species within the Trichoderma viride/atroviride/koningii complex by UP-PCR cross-blot hybridization.

Lübeck M, Bulat S, Alekhina I, Lieckfeldt E.

FEMS Microbiol Lett. 2004 Aug 15;237(2):255-60.

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