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Impact of transition to a subterranean lifestyle on morphological disparity and integration in talpid moles (Mammalia, Talpidae).

Sansalone G, Colangelo P, Loy A, Raia P, Wroe S, Piras P.

BMC Evol Biol. 2019 Sep 12;19(1):179. doi: 10.1186/s12862-019-1506-0.


Catalytic thermal degradation of Chlorella vulgaris: Evolving deep neural networks for optimization.

Teng SY, Loy ACM, Leong WD, How BS, Chin BLF, Máša V.

Bioresour Technol. 2019 Nov;292:121971. doi: 10.1016/j.biortech.2019.121971. Epub 2019 Aug 8.


Pneumocystis jirovecii pneumonia prophylaxis in hematopoietic stem cell transplantation, is it acceptable to wait for the engraftment for restarting it?

Mesini A, Ricci E, Faraci M, Loy A, Moscatelli A, Castagnola E.

Transpl Infect Dis. 2019 Aug 5:e13155. doi: 10.1111/tid.13155. [Epub ahead of print] No abstract available.


Draft Genome Sequence of Desulfosporosinus fructosivorans Strain 63.6FT, Isolated from Marine Sediment in the Baltic Sea.

Hausmann B, Vandieken V, Pjevac P, Schreck K, Herbold CW, Loy A.

Microbiol Resour Announc. 2019 Aug 1;8(31). pii: e00427-19. doi: 10.1128/MRA.00427-19.


Diversity decoupled from sulfur isotope fractionation in a sulfate-reducing microbial community.

Colangelo-Lillis J, Pelikan C, Herbold CW, Altshuler I, Loy A, Whyte LG, Wing BA.

Geobiology. 2019 Jul 21. doi: 10.1111/gbi.12356. [Epub ahead of print]


Recovery of cellulose fibers from oil palm empty fruit bunch for pulp and paper using green delignification approach.

Yiin CL, Ho S, Yusup S, Quitain AT, Chan YH, Loy ACM, Gwee YL.

Bioresour Technol. 2019 Oct;290:121797. doi: 10.1016/j.biortech.2019.121797. Epub 2019 Jul 12.


Draft Genome Sequence of Desulfosporosinus sp. Strain Sb-LF, Isolated from an Acidic Peatland in Germany.

Hausmann B, Pjevac P, Huemer M, Herbold CW, Pester M, Loy A.

Microbiol Resour Announc. 2019 Jul 18;8(29). pii: e00428-19. doi: 10.1128/MRA.00428-19.


Catalytic pyrolysis of Chlorella vulgaris: Kinetic and thermodynamic analysis.

Fong MJB, Loy ACM, Chin BLF, Lam MK, Yusup S, Jawad ZA.

Bioresour Technol. 2019 Oct;289:121689. doi: 10.1016/j.biortech.2019.121689. Epub 2019 Jun 22.


An overview of biomass thermochemical conversion technologies in Malaysia.

Chan YH, Cheah KW, How BS, Loy ACM, Shahbaz M, Singh HKG, Yusuf NR, Shuhaili AFA, Yusup S, Ghani WAWAK, Rambli J, Kansha Y, Lam HL, Hong BH, Ngan SL.

Sci Total Environ. 2019 Aug 25;680:105-123. doi: 10.1016/j.scitotenv.2019.04.211. Epub 2019 Apr 18. Review.


Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis.

Herp S, Brugiroux S, Garzetti D, Ring D, Jochum LM, Beutler M, Eberl C, Hussain S, Walter S, Gerlach RG, Ruscheweyh HJ, Huson D, Sellin ME, Slack E, Hanson B, Loy A, Baines JF, Rausch P, Basic M, Bleich A, Berry D, Stecher B.

Cell Host Microbe. 2019 May 8;25(5):681-694.e8. doi: 10.1016/j.chom.2019.03.004. Epub 2019 Apr 18.


Pseudomonas aeruginosa severe skin infection in a toddler with X-linked agammaglobulinemia due to a novel BTK mutation.

Riccardi N, Rotulo GA, Favilli F, Loy A, Moratto D, Giliani S, Mesini A, Romanini MV, Volpi S, Moscatelli A, Castagnola E.

Infez Med. 2019 Mar 1;27(1):73-76.


Historical Factors Associated With Past Environments Influence the Biogeography of Thermophilic Endospores in Arctic Marine Sediments.

Hanson CA, Müller AL, Loy A, Dona C, Appel R, Jørgensen BB, Hubert CRJ.

Front Microbiol. 2019 Feb 28;10:245. doi: 10.3389/fmicb.2019.00245. eCollection 2019.


Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member.

Hausmann B, Pelikan C, Rattei T, Loy A, Pester M.

MBio. 2019 Feb 12;10(1). pii: e02189-18. doi: 10.1128/mBio.02189-18.


Prolonged antibiotic administration for surgical site infection in pediatric laryngotracheal surgery.

Torre M, Paraboschi I, Loy A, Mesini A, Pistorio A, Simonini A, Mattioli G, Mazzei O, Piro L, Bandettini R, Castagnola E.

Laryngoscope. 2018 Dec 27. doi: 10.1002/lary.27699. [Epub ahead of print]


OpenMICE: an open spatial and temporal data set of small mammals in south-central Italy based on owl pellet data.

Paniccia C, Di Febbraro M, Delucchi L, Oliveto R, Marchetti M, Loy A.

Ecology. 2018 Dec;99(12):2874. doi: 10.1002/ecy.2506. Epub 2018 Oct 15.


Bacterial interactions during sequential degradation of cyanobacterial necromass in a sulfidic arctic marine sediment.

Müller AL, Pelikan C, de Rezende JR, Wasmund K, Putz M, Glombitza C, Kjeldsen KU, Jørgensen BB, Loy A.

Environ Microbiol. 2018 Aug;20(8):2927-2940. doi: 10.1111/1462-2920.14297. Epub 2018 Sep 3.


Stable-Isotope Probing of Human and Animal Microbiome Function.

Berry D, Loy A.

Trends Microbiol. 2018 Dec;26(12):999-1007. doi: 10.1016/j.tim.2018.06.004. Epub 2018 Jul 9. Review.


Kinetics and thermodynamic analysis in one-pot pyrolysis of rice hull using renewable calcium oxide based catalysts.

Gan DKW, Loy ACM, Chin BLF, Yusup S, Unrean P, Rianawati E, Acda MN.

Bioresour Technol. 2018 Oct;265:180-190. doi: 10.1016/j.biortech.2018.06.003. Epub 2018 Jun 6.


CD3ε Expression Defines Functionally Distinct Subsets of Vδ1 T Cells in Patients With Human Immunodeficiency Virus Infection.

Dunne PJ, Maher CO, Freeley M, Dunne K, Petrasca A, Orikiiriza J, Dunne MR, Reidy D, O'Dea S, Loy A, Woo J, Long A, Rogers TR, Mulcahy F, Doherty DG.

Front Immunol. 2018 May 2;9:940. doi: 10.3389/fimmu.2018.00940. eCollection 2018.


Heparin inhibits intracellular Mycobacterium tuberculosis bacterial replication by reducing iron levels in human macrophages.

Abreu R, Essler L, Loy A, Quinn F, Giri P.

Sci Rep. 2018 May 8;8(1):7296. doi: 10.1038/s41598-018-25480-y.


Thermogravimetric kinetic modelling of in-situ catalytic pyrolytic conversion of rice husk to bioenergy using rice hull ash catalyst.

Loy ACM, Gan DKW, Yusup S, Chin BLF, Lam MK, Shahbaz M, Unrean P, Acda MN, Rianawati E.

Bioresour Technol. 2018 Aug;261:213-222. doi: 10.1016/j.biortech.2018.04.020. Epub 2018 Apr 7.


Uncommon occurrence of high piperacillin-tazobactam and meropenem plasma concentrations and concomitant absence of neurotoxicity in pediatrics.

Mesini A, Loy A, Losurdo G, Moroni C, Barco S, Cangemi G, Moscatelli A, Risso F, Castagnola E.

Minerva Anestesiol. 2018 Sep;84(9):1111-1112. doi: 10.23736/S0375-9393.18.12600-9. Epub 2018 Apr 5. No abstract available.


Peatland Acidobacteria with a dissimilatory sulfur metabolism.

Hausmann B, Pelikan C, Herbold CW, Köstlbacher S, Albertsen M, Eichorst SA, Glavina Del Rio T, Huemer M, Nielsen PH, Rattei T, Stingl U, Tringe SG, Trojan D, Wentrup C, Woebken D, Pester M, Loy A.

ISME J. 2018 Jun;12(7):1729-1742. doi: 10.1038/s41396-018-0077-1. Epub 2018 Feb 23.


Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle.

Anantharaman K, Hausmann B, Jungbluth SP, Kantor RS, Lavy A, Warren LA, Rappé MS, Pester M, Loy A, Thomas BC, Banfield JF.

ISME J. 2018 Jun;12(7):1715-1728. doi: 10.1038/s41396-018-0078-0. Epub 2018 Feb 21.


Draft Genome Sequence of Telmatospirillum siberiense 26-4b1, an Acidotolerant Peatland Alphaproteobacterium Potentially Involved in Sulfur Cycling.

Hausmann B, Pjevac P, Schreck K, Herbold CW, Daims H, Wagner M, Loy A.

Genome Announc. 2018 Jan 25;6(4). pii: e01524-17. doi: 10.1128/genomeA.01524-17.


Granulated sugar for adjuvant treatment of surgical wound infection due to multi-drug-resistant pathogens in a child with sarcoma: a case report and literature review.

Naselli A, Accame L, Buffa P, Loy A, Bandettini R, Garaventa A, Della Casa Alberighi O, Castagnola E.

Infez Med. 2017 Dec 1;25(4):358-361.


Epidemiology of Infectious Complications During Extracorporeal Membrane Oxygenation in Children: A Single-Center Experience in 46 Runs.

Castagnola E, Gargiullo L, Loy A, Tatarelli P, Caviglia I, Bandettini R, Grasso C, Lampugnani E, Pezzato S, Tuo P, Moscatelli A.

Pediatr Infect Dis J. 2018 Jul;37(7):624-626. doi: 10.1097/INF.0000000000001873.


Ammonia-oxidising archaea living at low pH: Insights from comparative genomics.

Herbold CW, Lehtovirta-Morley LE, Jung MY, Jehmlich N, Hausmann B, Han P, Loy A, Pester M, Sayavedra-Soto LA, Rhee SK, Prosser JI, Nicol GW, Wagner M, Gubry-Rangin C.

Environ Microbiol. 2017 Dec;19(12):4939-4952. doi: 10.1111/1462-2920.13971. Epub 2017 Dec 4.


Colistin Area Under the Time-Concentration in Children Treated With Intravenous Loading Dose and Maintenance Therapy.

Mesini A, Loy A, Gattorno M, Moscatelli A, Bandettini R, Faraci M, Cangemi G, Castagnola E.

Clin Infect Dis. 2018 Feb 10;66(5):808-809. doi: 10.1093/cid/cix757. No abstract available.


Depth Distribution and Assembly of Sulfate-Reducing Microbial Communities in Marine Sediments of Aarhus Bay.

Jochum LM, Chen X, Lever MA, Loy A, Jørgensen BB, Schramm A, Kjeldsen KU.

Appl Environ Microbiol. 2017 Nov 16;83(23). pii: e01547-17. doi: 10.1128/AEM.01547-17. Print 2017 Dec 1.


Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters.

Lesaulnier CC, Herbold CW, Pelikan C, Berry D, Gérard C, Le Coz X, Gagnot S, Niggemann J, Dittmar T, Singer GA, Loy A.

Microbiome. 2017 Sep 22;5(1):126. doi: 10.1186/s40168-017-0344-9.


Management of Lyme Disease in European Children: a Review for Practical Purpose.

D'Alessandro M, Loy A, Castagnola E.

Curr Infect Dis Rep. 2017 Aug;19(8):27. doi: 10.1007/s11908-017-0582-9. Review.


HuR Small-Molecule Inhibitor Elicits Differential Effects in Adenomatosis Polyposis and Colorectal Carcinogenesis.

Lang M, Berry D, Passecker K, Mesteri I, Bhuju S, Ebner F, Sedlyarov V, Evstatiev R, Dammann K, Loy A, Kuzyk O, Kovarik P, Khare V, Beibel M, Roma G, Meisner-Kober N, Gasche C.

Cancer Res. 2017 May 1;77(9):2424-2438. doi: 10.1158/0008-5472.CAN-15-1726. Epub 2017 Feb 20.


The life sulfuric: microbial ecology of sulfur cycling in marine sediments.

Wasmund K, Mußmann M, Loy A.

Environ Microbiol Rep. 2017 Aug;9(4):323-344. doi: 10.1111/1758-2229.12538. Epub 2017 May 5. Review.


Physical Activity is Associated with Metabolic Health in Men Living with HIV.

Forde C, Loy A, O'Dea S, Mulcahy F, Gormley J, Daly C.

AIDS Behav. 2018 Jun;22(6):1965-1971. doi: 10.1007/s10461-017-1715-8.


Lifestyle and Horizontal Gene Transfer-Mediated Evolution of Mucispirillum schaedleri, a Core Member of the Murine Gut Microbiota.

Loy A, Pfann C, Steinberger M, Hanson B, Herp S, Brugiroux S, Gomes Neto JC, Boekschoten MV, Schwab C, Urich T, Ramer-Tait AE, Rattei T, Stecher B, Berry D.

mSystems. 2017 Jan 31;2(1). pii: e00171-16. doi: 10.1128/mSystems.00171-16. eCollection 2017 Jan-Feb.


Environmental Enteric Dysfunction and Growth Failure/Stunting in Global Child Health.

Owino V, Ahmed T, Freemark M, Kelly P, Loy A, Manary M, Loechl C.

Pediatrics. 2016 Dec;138(6). pii: e20160641. Epub 2016 Nov 4. Review.


Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium.

Brugiroux S, Beutler M, Pfann C, Garzetti D, Ruscheweyh HJ, Ring D, Diehl M, Herp S, Lötscher Y, Hussain S, Bunk B, Pukall R, Huson DH, Münch PC, McHardy AC, McCoy KD, Macpherson AJ, Loy A, Clavel T, Berry D, Stecher B.

Nat Microbiol. 2016 Nov 21;2:16215. doi: 10.1038/nmicrobiol.2016.215.


Candida infections in paediatrics: Results from a prospective single-centre study in a tertiary care children's hospital.

Mesini A, Bandettini R, Caviglia I, Fioredda F, Amoroso L, Faraci M, Mattioli G, Piaggio G, Risso FM, Moscatelli A, Loy A, Castagnola E.

Mycoses. 2017 Feb;60(2):118-123. doi: 10.1111/myc.12570. Epub 2016 Sep 29.


Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses.

Roux S, Brum JR, Dutilh BE, Sunagawa S, Duhaime MB, Loy A, Poulos BT, Solonenko N, Lara E, Poulain J, Pesant S, Kandels-Lewis S, Dimier C, Picheral M, Searson S, Cruaud C, Alberti A, Duarte CM, Gasol JM, Vaqué D; Tara Oceans Coordinators, Bork P, Acinas SG, Wincker P, Sullivan MB.

Nature. 2016 Sep 29;537(7622):689-693. doi: 10.1038/nature19366. Epub 2016 Sep 21.


Stable Isotope Techniques for the Assessment of Host and Microbiota Response During Gastrointestinal Dysfunction.

Butler RN, Kosek M, Krebs NF, Loechl CU, Loy A, Owino VO, Zimmermann MB, Morrison DJ.

J Pediatr Gastroenterol Nutr. 2017 Jan;64(1):8-14. doi: 10.1097/MPG.0000000000001373. Review.


What Is the Best Initial Empirical Treatment of Suspected Sepsis in a Newborn Readmitted Soon after Discharge Home in an Era of Increased Resistance to Antibiotics? A Report of Two Cases.

Castagnola E, Gargiullo L, Renna S, Loy A, Risso F, Moscatelli A, Baldelli I, Cangemi G, Bandettini R.

Am J Perinatol. 2016 Sep;33(11):1090-2. doi: 10.1055/s-0036-1586104. Epub 2016 Sep 7.


Bacterial nutrient foraging in a mouse model of enteral nutrient deprivation: insight into the gut origin of sepsis.

Ralls MW, Demehri FR, Feng Y, Raskind S, Ruan C, Schintlmeister A, Loy A, Hanson B, Berry D, Burant CF, Teitelbaum DH.

Am J Physiol Gastrointest Liver Physiol. 2016 Oct 1;311(4):G734-G743. doi: 10.1152/ajpgi.00088.2016. Epub 2016 Sep 1.


A systematic conservation planning approach to fire risk management in Natura 2000 sites.

Foresta M, Carranza ML, Garfì V, Di Febbraro M, Marchetti M, Loy A.

J Environ Manage. 2016 Oct 1;181:574-581. doi: 10.1016/j.jenvman.2016.07.006. Epub 2016 Aug 5.


Corrigendum: A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes.

Herbold CW, Pelikan C, Kuzyk O, Hausmann B, Angel R, Berry D, Loy A.

Front Microbiol. 2016 Jun 6;7:870. doi: 10.3389/fmicb.2016.00870. eCollection 2016.


Ultra high performance liquid chromatography-tandem mass spectrometry vs. commercial immunoassay for determination of vancomycin plasma concentration in children. Possible implications for everyday clinical practice.

Barco S, Castagnola E, Gennai I, Barbagallo L, Loy A, Tripodi G, Cangemi G.

J Chemother. 2016 Oct;28(5):395-402. doi: 10.1080/1120009X.2016.1157947. Epub 2016 May 30.


Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling.

Wasmund K, Cooper M, Schreiber L, Lloyd KG, Baker BJ, Petersen DG, Jørgensen BB, Stepanauskas R, Reinhardt R, Schramm A, Loy A, Adrian L.

MBio. 2016 May 3;7(3). pii: e00266-16. doi: 10.1128/mBio.00266-16.


Carbapenem-resistant Enterobacteriaceae Infections in Children: An Italian Retrospective Multicenter Study.

Montagnani C, Prato M, Scolfaro C, Colombo S, Esposito S, Tagliabue C, Lo Vecchio A, Bruzzese E, Loy A, Cursi L, Vuerich M, de Martino M, Galli L; Italian Society of Pediatric Infectious Diseases.

Pediatr Infect Dis J. 2016 Aug;35(8):862-8. doi: 10.1097/INF.0000000000001188.


Gypsum amendment to rice paddy soil stimulated bacteria involved in sulfur cycling but largely preserved the phylogenetic composition of the total bacterial community.

Wörner S, Zecchin S, Dan J, Todorova NH, Loy A, Conrad R, Pester M.

Environ Microbiol Rep. 2016 Jun;8(3):413-23. doi: 10.1111/1758-2229.12413. Epub 2016 May 11.


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