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Items: 39

1.

QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient.

Lowry DB, Lovell JT, Zhang L, Bonnette J, Fay PA, Mitchell RB, Lloyd-Reilley J, Boe AR, Wu Y, Rouquette FM Jr, Wynia RL, Weng X, Behrman KD, Healey A, Barry K, Lipzen A, Bauer D, Sharma A, Jenkins J, Schmutz J, Fritschi FB, Juenger TE.

Proc Natl Acad Sci U S A. 2019 Jun 25;116(26):12933-12941. doi: 10.1073/pnas.1821543116. Epub 2019 Jun 10.

2.

Elevated temperatures cause loss of seed set in common bean (Phaseolus vulgaris L.) potentially through the disruption of source-sink relationships.

Soltani A, Weraduwage SM, Sharkey TD, Lowry DB.

BMC Genomics. 2019 Apr 24;20(1):312. doi: 10.1186/s12864-019-5669-2.

3.

Mechanisms of a locally adaptive shift in allocation among growth, reproduction, and herbivore resistance in Mimulus guttatus.

Lowry DB, Popovic D, Brennan DJ, Holeski LM.

Evolution. 2019 Jun;73(6):1168-1181. doi: 10.1111/evo.13699. Epub 2019 Mar 18.

PMID:
30793293
4.

A Molecular View of Plant Local Adaptation: Incorporating Stress-Response Networks.

VanWallendael A, Soltani A, Emery NC, Peixoto MM, Olsen J, Lowry DB.

Annu Rev Plant Biol. 2019 Apr 29;70:559-583. doi: 10.1146/annurev-arplant-050718-100114. Epub 2019 Feb 20.

PMID:
30786237
5.

The genomic landscape of molecular responses to natural drought stress in Panicum hallii.

Lovell JT, Jenkins J, Lowry DB, Mamidi S, Sreedasyam A, Weng X, Barry K, Bonnette J, Campitelli B, Daum C, Gordon SP, Gould BA, Khasanova A, Lipzen A, MacQueen A, Palacio-Mejía JD, Plott C, Shakirov EV, Shu S, Yoshinaga Y, Zane M, Kudrna D, Talag JD, Rokhsar D, Grimwood J, Schmutz J, Juenger TE.

Nat Commun. 2018 Dec 6;9(1):5213. doi: 10.1038/s41467-018-07669-x.

6.

Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae).

Gould BA, Palacio-Mejia JD, Jenkins J, Mamidi S, Barry K, Schmutz J, Juenger TE, Lowry DB.

BMC Genomics. 2018 Nov 1;19(1):792. doi: 10.1186/s12864-018-5179-7.

7.

Gene regulatory divergence between locally adapted ecotypes in their native habitats.

Gould BA, Chen Y, Lowry DB.

Mol Ecol. 2018 Nov;27(21):4174-4188. doi: 10.1111/mec.14852. Epub 2018 Oct 5.

PMID:
30168223
8.

Genetic Analysis of Flooding Tolerance in an Andean Diversity Panel of Dry Bean (Phaseolus vulgaris L.).

Soltani A, MafiMoghaddam S, Oladzad-Abbasabadi A, Walter K, Kearns PJ, Vasquez-Guzman J, Mamidi S, Lee R, Shade AL, Jacobs JL, Chilivers MI, Lowry DB, McClean P, Osorno JM.

Front Plant Sci. 2018 Jun 6;9:767. doi: 10.3389/fpls.2018.00767. eCollection 2018.

9.

Responsible RAD: Striving for best practices in population genomic studies of adaptation.

Lowry DB, Hoban S, Kelley JL, Lotterhos KE, Reed LK, Antolin MF, Storfer A.

Mol Ecol Resour. 2017 May;17(3):366-369. doi: 10.1111/1755-0998.12677.

PMID:
28382730
10.

Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation.

Lowry DB, Hoban S, Kelley JL, Lotterhos KE, Reed LK, Antolin MF, Storfer A.

Mol Ecol Resour. 2017 Mar;17(2):142-152. doi: 10.1111/1755-0998.12635. Epub 2016 Dec 16.

11.

Pooled ecotype sequencing reveals candidate genetic mechanisms for adaptive differentiation and reproductive isolation.

Gould BA, Chen Y, Lowry DB.

Mol Ecol. 2017 Jan;26(1):163-177. doi: 10.1111/mec.13881. Epub 2016 Nov 3.

PMID:
27747958
12.

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions.

Hoban S, Kelley JL, Lotterhos KE, Antolin MF, Bradburd G, Lowry DB, Poss ML, Reed LK, Storfer A, Whitlock MC.

Am Nat. 2016 Oct;188(4):379-97. doi: 10.1086/688018. Epub 2016 Aug 15. Review.

13.

The Genetic Basis of Upland/Lowland Ecotype Divergence in Switchgrass (Panicum virgatum).

Milano ER, Lowry DB, Juenger TE.

G3 (Bethesda). 2016 Nov 8;6(11):3561-3570. doi: 10.1534/g3.116.032763.

14.

Promises and Challenges of Eco-Physiological Genomics in the Field: Tests of Drought Responses in Switchgrass.

Lovell JT, Shakirov EV, Schwartz S, Lowry DB, Aspinwall MJ, Taylor SH, Bonnette J, Palacio-Mejia JD, Hawkes CV, Fay PA, Juenger TE.

Plant Physiol. 2016 Oct;172(2):734-748. Epub 2016 May 31.

15.

Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass.

Lovell JT, Schwartz S, Lowry DB, Shakirov EV, Bonnette JE, Weng X, Wang M, Johnson J, Sreedasyam A, Plott C, Jenkins J, Schmutz J, Juenger TE.

Genome Res. 2016 Apr;26(4):510-8. doi: 10.1101/gr.198135.115. Epub 2016 Mar 7.

16.

Climate structures genetic variation across a species' elevation range: a test of range limits hypotheses.

Sexton JP, Hufford MB, Bateman AC, Lowry DB, Meimberg H, Strauss SY, Rice KJ.

Mol Ecol. 2016 Feb;25(4):911-28. doi: 10.1111/mec.13528. Epub 2016 Feb 9.

17.

Exploiting Differential Gene Expression and Epistasis to Discover Candidate Genes for Drought-Associated QTLs in Arabidopsis thaliana.

Lovell JT, Mullen JL, Lowry DB, Awole K, Richards JH, Sen S, Verslues PE, Juenger TE, McKay JK.

Plant Cell. 2015 Apr;27(4):969-83. doi: 10.1105/tpc.15.00122. Epub 2015 Apr 14.

18.

Genomic studies on the nature of species: adaptation and speciation in Mimulus.

Twyford AD, Streisfeld MA, Lowry DB, Friedman J.

Mol Ecol. 2015 Jun;24(11):2601-9. doi: 10.1111/mec.13190. Epub 2015 May 14.

PMID:
25856725
19.

The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii.

Lowry DB, Hernandez K, Taylor SH, Meyer E, Logan TL, Barry KW, Chapman JA, Rokhsar DS, Schmutz J, Juenger TE.

New Phytol. 2015 Jan;205(1):402-14. doi: 10.1111/nph.13027. Epub 2014 Sep 23.

20.

Integrating transcriptional, metabolomic, and physiological responses to drought stress and recovery in switchgrass (Panicum virgatum L.).

Meyer E, Aspinwall MJ, Lowry DB, Palacio-Mejía JD, Logan TL, Fay PA, Juenger TE.

BMC Genomics. 2014 Jun 26;15:527. doi: 10.1186/1471-2164-15-527.

21.

Natural variation in abiotic stress responsive gene expression and local adaptation to climate in Arabidopsis thaliana.

Lasky JR, Des Marais DL, Lowry DB, Povolotskaya I, McKay JK, Richards JH, Keitt TH, Juenger TE.

Mol Biol Evol. 2014 Sep;31(9):2283-96. doi: 10.1093/molbev/msu170. Epub 2014 May 21.

22.

Divergent population structure and climate associations of a chromosomal inversion polymorphism across the Mimulus guttatus species complex.

Oneal E, Lowry DB, Wright KM, Zhu Z, Willis JH.

Mol Ecol. 2014 Jun;23(11):2844-60. doi: 10.1111/mec.12778.

23.

Adaptations between ecotypes and along environmental gradients in Panicum virgatum.

Lowry DB, Behrman KD, Grabowski P, Morris GP, Kiniry JR, Juenger TE.

Am Nat. 2014 May;183(5):682-92. doi: 10.1086/675760. Epub 2014 Mar 28.

PMID:
24739200
24.

Expression quantitative trait locus mapping across water availability environments reveals contrasting associations with genomic features in Arabidopsis.

Lowry DB, Logan TL, Santuari L, Hardtke CS, Richards JH, DeRose-Wilson LJ, McKay JK, Sen S, Juenger TE.

Plant Cell. 2013 Sep;25(9):3266-79. doi: 10.1105/tpc.113.115352. Epub 2013 Sep 17.

25.

Genotypic variation in traits linked to climate and aboveground productivity in a widespread C₄ grass: evidence for a functional trait syndrome.

Aspinwall MJ, Lowry DB, Taylor SH, Juenger TE, Hawkes CV, Johnson MV, Kiniry JR, Fay PA.

New Phytol. 2013 Sep;199(4):966-80. doi: 10.1111/nph.12341. Epub 2013 May 23.

26.

Indirect evolution of hybrid lethality due to linkage with selected locus in Mimulus guttatus.

Wright KM, Lloyd D, Lowry DB, Macnair MR, Willis JH.

PLoS Biol. 2013;11(2):e1001497. doi: 10.1371/journal.pbio.1001497. Epub 2013 Feb 26.

27.

A population genetic transect of Panicum hallii (Poaceae).

Lowry DB, Purmal CT, Juenger TE.

Am J Bot. 2013 Mar;100(3):592-601. doi: 10.3732/ajb.1200379. Epub 2013 Feb 20.

28.

Local adaptation in the model plant.

Lowry DB.

New Phytol. 2012 Jun;194(4):888-90. doi: 10.1111/j.1469-8137.2012.04146.x. No abstract available.

29.

Microsatellite markers for the native Texas perennial grass, Panicum hallii (Poaceae).

Lowry DB, Purmal CT, Meyer E, Juenger TE.

Am J Bot. 2012 Mar;99(3):e114-6. doi: 10.3732/ajb.1100430. Epub 2012 Feb 23.

30.

Mapping of ionomic traits in Mimulus guttatus reveals Mo and Cd QTLs that colocalize with MOT1 homologues.

Lowry DB, Sheng CC, Zhu Z, Juenger TE, Lahner B, Salt DE, Willis JH.

PLoS One. 2012;7(1):e30730. doi: 10.1371/journal.pone.0030730. Epub 2012 Jan 24.

31.

Five anthocyanin polymorphisms are associated with an R2R3-MYB cluster in Mimulus guttatus (Phrymaceae).

Lowry DB, Sheng CC, Lasky JR, Willis JH.

Am J Bot. 2012 Jan;99(1):82-91. doi: 10.3732/ajb.1100285. Epub 2011 Dec 20.

32.

A widespread chromosomal inversion polymorphism contributes to a major life-history transition, local adaptation, and reproductive isolation.

Lowry DB, Willis JH.

PLoS Biol. 2010 Sep 28;8(9). pii: e1000500. doi: 10.1371/journal.pbio.1000500. Erratum in: PLoS Biol. 2012 Jan;10(1):10.1371/annotation/caa1b7dd-9b6d-44db-b6ce-666954903625.

33.

Is local adaptation in Mimulus guttatus caused by trade-offs at individual loci?

Hall MC, Lowry DB, Willis JH.

Mol Ecol. 2010 Jul;19(13):2739-53. doi: 10.1111/j.1365-294X.2010.04680.x. Epub 2010 Jun 7.

PMID:
20546131
34.

Landscape evolutionary genomics.

Lowry DB.

Biol Lett. 2010 Aug 23;6(4):502-4. doi: 10.1098/rsbl.2009.0969. Epub 2010 Jan 27.

35.

Natural variation for drought-response traits in the Mimulus guttatus species complex.

Wu CA, Lowry DB, Nutter LI, Willis JH.

Oecologia. 2010 Jan;162(1):23-33. doi: 10.1007/s00442-009-1448-0. Epub 2009 Sep 1.

PMID:
19727827
36.

Genetic and physiological basis of adaptive salt tolerance divergence between coastal and inland Mimulus guttatus.

Lowry DB, Hall MC, Salt DE, Willis JH.

New Phytol. 2009 Aug;183(3):776-88. doi: 10.1111/j.1469-8137.2009.02901.x. Epub 2009 Jun 22.

37.

Ecological reproductive isolation of coast and inland races of Mimulus guttatus.

Lowry DB, Rockwood RC, Willis JH.

Evolution. 2008 Sep;62(9):2196-214. doi: 10.1111/j.1558-5646.2008.00457.x. Epub 2008 Jul 14.

PMID:
18637837
38.

Review. The strength and genetic basis of reproductive isolating barriers in flowering plants.

Lowry DB, Modliszewski JL, Wright KM, Wu CA, Willis JH.

Philos Trans R Soc Lond B Biol Sci. 2008 Sep 27;363(1506):3009-21. doi: 10.1098/rstb.2008.0064. Review.

39.

Mimulus is an emerging model system for the integration of ecological and genomic studies.

Wu CA, Lowry DB, Cooley AM, Wright KM, Lee YW, Willis JH.

Heredity (Edinb). 2008 Feb;100(2):220-30. Epub 2007 Jun 6. Review.

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