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Items: 1 to 50 of 104

1.

Multiplicative fitness, rapid haplotype discovery, and fitness decay explain evolution of human MHC.

Lobkovsky AE, Levi L, Wolf YI, Maiers M, Gragert L, Alter I, Louzoun Y, Koonin EV.

Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14098-14104. doi: 10.1073/pnas.1714436116. Epub 2019 Jun 21.

PMID:
31227609
2.

Modulation of cytokine patterns and microbiome during pregnancy in IBD.

van der Giessen J, Binyamin D, Belogolovski A, Frishman S, Tenenbaum-Gavish K, Hadar E, Louzoun Y, Peppelenbosch MP, van der Woude CJ, Koren O, Fuhler GM.

Gut. 2019 Jun 5. pii: gutjnl-2019-318263. doi: 10.1136/gutjnl-2019-318263. [Epub ahead of print]

3.

Level of neo-epitope predecessor and mutation type determine T cell activation of MHC binding peptides.

Besser H, Yunger S, Merhavi-Shoham E, Cohen CJ, Louzoun Y.

J Immunother Cancer. 2019 May 22;7(1):135. doi: 10.1186/s40425-019-0595-z.

4.

Progesterone Increases Bifidobacterium Relative Abundance during Late Pregnancy.

Nuriel-Ohayon M, Neuman H, Ziv O, Belogolovski A, Barsheshet Y, Bloch N, Uzan A, Lahav R, Peretz A, Frishman S, Hod M, Hadar E, Louzoun Y, Avni O, Koren O.

Cell Rep. 2019 Apr 16;27(3):730-736.e3. doi: 10.1016/j.celrep.2019.03.075.

5.

GRIMM: GRaph IMputation and matching for HLA genotypes.

Maiers M, Halagan M, Gragert L, Bashyal P, Brelsford J, Schneider J, Lutsker P, Louzoun Y.

Bioinformatics. 2019 Sep 15;35(18):3520-3523. doi: 10.1093/bioinformatics/btz050.

PMID:
30689784
6.

Long-term context-dependent genetic adaptation of the viral genetic cloud.

Braun T, Bordería AV, Barbezange C, Vignuzzi M, Louzoun Y.

Bioinformatics. 2019 Jun 1;35(11):1907-1915. doi: 10.1093/bioinformatics/bty891.

PMID:
30346482
7.

Epidemiological and genetic analysis of Avian avulavirus-1 in Israel reveals parallel circulating strains and a new sub-genotype within genotype VI.

Wiseman A, Ben Izhak M, Tal S, Wachtel C, Berman E, Yechezkel E, Golan E, Haddas R, Lublin A, Raviv Z, Pirak M, Klement E, Louzoun Y.

Infect Genet Evol. 2018 Dec;66:159-170. doi: 10.1016/j.meegid.2018.09.017. Epub 2018 Sep 21. No abstract available.

PMID:
30248476
8.

Family-size variability grows with collapse rate in a birth-death-catastrophe model.

Dori N, Behar H, Brot H, Louzoun Y.

Phys Rev E. 2018 Jul;98(1-1):012416. doi: 10.1103/PhysRevE.98.012416.

PMID:
30110815
9.

Evidence for Shaping of Light Chain Repertoire by Structural Selection.

Toledano A, Elhanati Y, Benichou JIC, Walczak AM, Mora T, Louzoun Y.

Front Immunol. 2018 Jun 22;9:1307. doi: 10.3389/fimmu.2018.01307. eCollection 2018.

10.

Non-invasive biomarkers of fetal brain development reflecting prenatal stress: An integrative multi-scale multi-species perspective on data collection and analysis.

Frasch MG, Lobmaier SM, Stampalija T, Desplats P, Pallarés ME, Pastor V, Brocco MA, Wu HT, Schulkin J, Herry CL, Seely AJE, Metz GAS, Louzoun Y, Antonelli MC.

Neurosci Biobehav Rev. 2018 May 30. pii: S0149-7634(18)30054-X. doi: 10.1016/j.neubiorev.2018.05.026. [Epub ahead of print] Review.

PMID:
29859198
11.

Interleukin 1α-Deficient Mice Have an Altered Gut Microbiota Leading to Protection from Dextran Sodium Sulfate-Induced Colitis.

Nunberg M, Werbner N, Neuman H, Bersudsky M, Braiman A, Ben-Shoshan M, Ben Izhak M, Louzoun Y, Apte RN, Voronov E, Koren O.

mSystems. 2018 May 8;3(3). pii: e00213-17. doi: 10.1128/mSystems.00213-17. eCollection 2018 May-Jun.

12.

Increased RNA Editing May Provide a Source for Autoantigens in Systemic Lupus Erythematosus.

Roth SH, Danan-Gotthold M, Ben-Izhak M, Rechavi G, Cohen CJ, Louzoun Y, Levanon EY.

Cell Rep. 2018 Apr 3;23(1):50-57. doi: 10.1016/j.celrep.2018.03.036.

13.

Origins and specificity of auto-antibodies in Sm+ SLE patients.

Kalinina O, Louzoun Y, Wang Y, Utset T, Weigert M.

J Autoimmun. 2018 Jun;90:94-104. doi: 10.1016/j.jaut.2018.02.008. Epub 2018 Mar 1.

PMID:
29503043
14.

Cross-modality deep learning-based prediction of TAP binding and naturally processed peptide.

Besser H, Louzoun Y.

Immunogenetics. 2018 Jul;70(7):419-428. doi: 10.1007/s00251-018-1054-6. Epub 2018 Feb 28.

PMID:
29492592
15.

Brain-to-Brain Synchrony during Naturalistic Social Interactions.

Kinreich S, Djalovski A, Kraus L, Louzoun Y, Feldman R.

Sci Rep. 2017 Dec 6;7(1):17060. doi: 10.1038/s41598-017-17339-5.

16.

Modeling coverage gaps in haplotype frequencies via Bayesian inference to improve stem cell donor selection.

Louzoun Y, Alter I, Gragert L, Albrecht M, Maiers M.

Immunogenetics. 2018 May;70(5):279-292. doi: 10.1007/s00251-017-1040-4. Epub 2017 Nov 9.

PMID:
29124304
17.

HLA class I haplotype diversity is consistent with selection for frequent existing haplotypes.

Alter I, Gragert L, Fingerson S, Maiers M, Louzoun Y.

PLoS Comput Biol. 2017 Aug 28;13(8):e1005693. doi: 10.1371/journal.pcbi.1005693. eCollection 2017 Aug.

18.

Support vector machine-based differentiation between aggressive and chronic periodontitis using microbial profiles.

Feres M, Louzoun Y, Haber S, Faveri M, Figueiredo LC, Levin L.

Int Dent J. 2018 Feb;68(1):39-46. doi: 10.1111/idj.12326. Epub 2017 Aug 2.

PMID:
28771699
19.

Converging evolution leads to near maximal junction diversity through parallel mechanisms in B and T cell receptors.

Benichou JIC, van Heijst JWJ, Glanville J, Louzoun Y.

Phys Biol. 2017 Jun 15;14(4):045003. doi: 10.1088/1478-3975/aa7366.

PMID:
28510537
20.

Corrigendum to "Unraveling cognitive traits using the Morris water maze unbiased strategy classification (MUST-C) algorithm" [Brain Behav. Immun. 52C (2016) 132-144].

Illouz T, Madar R, Louzoun Y, Griffioen KJ, Okun E.

Brain Behav Immun. 2017 Mar;61:386. doi: 10.1016/j.bbi.2016.02.016. Epub 2016 Feb 26. No abstract available.

PMID:
28213173
21.

Unbiased classification of spatial strategies in the Barnes maze.

Illouz T, Madar R, Clague C, Griffioen KJ, Louzoun Y, Okun E.

Bioinformatics. 2016 Nov 1;32(21):3314-3320. Epub 2016 Jul 4.

PMID:
27378295
22.

Fluctuations-induced coexistence in public goods dynamics.

Behar H, Brenner N, Ariel G, Louzoun Y.

Phys Biol. 2016 Oct 18;13(5):056006.

PMID:
27754974
23.

Self-Antigen-Driven Thymic B Cell Class Switching Promotes T Cell Central Tolerance.

Perera J, Zheng Z, Li S, Gudjonson H, Kalinina O, Benichou JIC, Block KE, Louzoun Y, Yin D, Chong AS, Dinner AR, Weigert M, Huang H.

Cell Rep. 2016 Oct 4;17(2):387-398. doi: 10.1016/j.celrep.2016.09.011.

24.

Effects of distribution of infection rate on epidemic models.

Lachiany M, Louzoun Y.

Phys Rev E. 2016 Aug;94(2-1):022409. doi: 10.1103/PhysRevE.94.022409. Epub 2016 Aug 11.

PMID:
27627337
25.

Population Growth Combined with Wide Offspring Distributions can Increase Fixation Rate and Reduce Genetic Diversity.

Alter I, Louzoun Y.

Bull Math Biol. 2016 Jul;78(7):1477-92. doi: 10.1007/s11538-016-0191-z. Epub 2016 Jul 15.

PMID:
27422387
26.

System-wide Analysis of the T Cell Response.

Covacu R, Philip H, Jaronen M, Almeida J, Kenison JE, Darko S, Chao CC, Yaari G, Louzoun Y, Carmel L, Douek DC, Efroni S, Quintana FJ.

Cell Rep. 2016 Mar 22;14(11):2733-44. doi: 10.1016/j.celrep.2016.02.056. Epub 2016 Mar 10.

27.

Impact of the shedding level on transmission of persistent infections in Mycobacterium avium subspecies paratuberculosis (MAP).

Slater N, Mitchell RM, Whitlock RH, Fyock T, Pradhan AK, Knupfer E, Schukken YH, Louzoun Y.

Vet Res. 2016 Feb 29;47:38. doi: 10.1186/s13567-016-0323-3.

28.

DUSTER: dynamic contrast enhance up-sampled temporal resolution analysis method.

Liberman G, Louzoun Y, Artzi M, Nadav G, Ewing JR, Ben Bashat D.

Magn Reson Imaging. 2016 May;34(4):442-50. doi: 10.1016/j.mri.2015.12.014. Epub 2015 Dec 18.

PMID:
26708030
29.

Estimate of within population incremental selection through branch imbalance in lineage trees.

Liberman G, Benichou JI, Maman Y, Glanville J, Alter I, Louzoun Y.

Nucleic Acids Res. 2016 Mar 18;44(5):e46. doi: 10.1093/nar/gkv1198. Epub 2015 Nov 19.

30.

Unraveling cognitive traits using the Morris water maze unbiased strategy classification (MUST-C) algorithm.

Illouz T, Madar R, Louzoun Y, Griffioen KJ, Okun E.

Brain Behav Immun. 2016 Feb;52:132-144. doi: 10.1016/j.bbi.2015.10.013. Epub 2015 Oct 24. Erratum in: Brain Behav Immun. 2017 Mar;61:386.

31.

The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales.

Yaari G, Benichou JI, Vander Heiden JA, Kleinstein SH, Louzoun Y.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 5;370(1676). pii: 20140242. doi: 10.1098/rstb.2014.0242.

32.

Adaptive shut-down of EEG activity predicts critical acidemia in the near-term ovine fetus.

Frasch MG, Durosier LD, Gold N, Cao M, Matushewski B, Keenliside L, Louzoun Y, Ross MG, Richardson BS.

Physiol Rep. 2015 Jul;3(7). pii: e12435. doi: 10.14814/phy2.12435.

33.

Two state model for a constant disease hazard in paratuberculosis (and other bovine diseases).

Louzoun Y, Mitchell R, Behar H, Schukken Y.

Vet Res. 2015 Jun 19;46:67. doi: 10.1186/s13567-015-0189-9.

34.

Differences in intermittent and continuous fecal shedding patterns between natural and experimental Mycobacterium avium subspecies paratuberculosis infections in cattle.

Mitchell RM, Schukken Y, Koets A, Weber M, Bakker D, Stabel J, Whitlock RH, Louzoun Y.

Vet Res. 2015 Jun 19;46:66. doi: 10.1186/s13567-015-0188-x.

35.

Power laws for heavy-tailed distributions: modeling allele and haplotype diversity for the national marrow donor program.

Slater N, Louzoun Y, Gragert L, Maiers M, Chatterjee A, Albrecht M.

PLoS Comput Biol. 2015 Apr 22;11(4):e1004204. doi: 10.1371/journal.pcbi.1004204. eCollection 2015 Apr.

36.

Commensal pathogens as a source of a coexistence mechanism.

Behar H, Louzoun Y.

J Theor Biol. 2015 Apr 7;370:45-52. doi: 10.1016/j.jtbi.2015.01.030. Epub 2015 Feb 4.

PMID:
25660058
37.

Hepatitis B surface antigen genetic elements critical for immune escape correlate with hepatitis B virus reactivation upon immunosuppression.

Salpini R, Colagrossi L, Bellocchi MC, Surdo M, Becker C, Alteri C, Aragri M, Ricciardi A, Armenia D, Pollicita M, Di Santo F, Carioti L, Louzoun Y, Mastroianni CM, Lichtner M, Paoloni M, Esposito M, D'Amore C, Marrone A, Marignani M, Sarrecchia C, Sarmati L, Andreoni M, Angelico M, Verheyen J, Perno CF, Svicher V.

Hepatology. 2015 Mar;61(3):823-33. doi: 10.1002/hep.27604. Epub 2015 Jan 28.

38.

Viral CD8 T cell epitope nucleotide composition shows evidence of short- and long-term evolutionary strategies.

Maman Y, Hershberg U, Louzoun Y.

Immunogenetics. 2015 Jan;67(1):15-24. doi: 10.1007/s00251-014-0811-4. Epub 2014 Nov 8.

PMID:
25376343
39.

Coexistence of productive and non-productive populations by fluctuation-driven spatio-temporal patterns.

Behar H, Brenner N, Louzoun Y.

Theor Popul Biol. 2014 Sep;96:20-9. doi: 10.1016/j.tpb.2014.06.002. Epub 2014 Jul 21.

PMID:
25058368
40.

T₁ mapping using variable flip angle SPGR data with flip angle correction.

Liberman G, Louzoun Y, Ben Bashat D.

J Magn Reson Imaging. 2014 Jul;40(1):171-80. doi: 10.1002/jmri.24373. Epub 2013 Nov 25.

PMID:
24990618
41.

A mathematical model for pancreatic cancer growth and treatments.

Louzoun Y, Xue C, Lesinski GB, Friedman A.

J Theor Biol. 2014 Jun 21;351:74-82. doi: 10.1016/j.jtbi.2014.02.028. Epub 2014 Mar 1.

42.

Genes related to differentiation are correlated with the gene regulatory network structure.

Bodaker M, Meshorer E, Mitrani E, Louzoun Y.

Bioinformatics. 2014 Feb 1;30(3):406-13. doi: 10.1093/bioinformatics/btt685. Epub 2013 Dec 12.

PMID:
24336647
43.

Edge removal balances preferential attachment and triad closing.

Brot H, Honig M, Muchnik L, Goldenberg J, Louzoun Y.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Oct;88(4):042815. Epub 2013 Oct 22.

PMID:
24229233
44.

Multi Step Selection in Ig H Chains is Initially Focused on CDR3 and Then on Other CDR Regions.

Liberman G, Benichou J, Tsaban L, Glanville J, Louzoun Y.

Front Immunol. 2013 Sep 17;4:274. doi: 10.3389/fimmu.2013.00274. eCollection 2013.

45.

Viral proteome size and CD8+ T cell epitope density are correlated: the effect of complexity on selection.

Agranovich A, Maman Y, Louzoun Y.

Infect Genet Evol. 2013 Dec;20:71-7. doi: 10.1016/j.meegid.2013.07.030. Epub 2013 Aug 15.

PMID:
23954420
46.

Diffusion rate determines balance between extinction and proliferation in birth-death processes.

Behar H, Agranovich A, Louzoun Y.

Math Biosci Eng. 2013 Jun;10(3):523-50. doi: 10.3934/mbe.2013.10.523.

47.

The restricted DH gene reading frame usage in the expressed human antibody repertoire is selected based upon its amino acid content.

Benichou J, Glanville J, Prak ET, Azran R, Kuo TC, Pons J, Desmarais C, Tsaban L, Louzoun Y.

J Immunol. 2013 Jun 1;190(11):5567-77. doi: 10.4049/jimmunol.1201929. Epub 2013 Apr 29.

48.

Mathematical conditions for induced cell differentiation and trans-differentiation in adult cells.

Bodaker M, Louzoun Y, Mitrani E.

Bull Math Biol. 2013 May;75(5):819-44. doi: 10.1007/s11538-013-9837-2. Epub 2013 Apr 11.

PMID:
23576207
49.

Predictor for the effect of amino acid composition on CD4+ T cell epitopes preprocessing.

Hoze E, Tsaban L, Maman Y, Louzoun Y.

J Immunol Methods. 2013 May 31;391(1-2):163-73. doi: 10.1016/j.jim.2013.02.006. Epub 2013 Feb 26.

50.

Brain activation and heart rate during script-driven traumatic imagery in PTSD: preliminary findings.

Barkay G, Freedman N, Lester H, Louzoun Y, Sapoznikov D, Luckenbaugh D, Shalev AY, Chisin RG, Bonne O.

Psychiatry Res. 2012 Nov 30;204(2-3):155-60. doi: 10.1016/j.pscychresns.2012.08.007. Epub 2012 Nov 6.

PMID:
23137802

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