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Items: 1 to 50 of 237

1.

TacoxDNA: A user-friendly web server for simulations of complex DNA structures, from single strands to origami.

Suma A, Poppleton E, Matthies M, Šulc P, Romano F, Louis AA, Doye JPK, Micheletti C, Rovigatti L.

J Comput Chem. 2019 Jul 13. doi: 10.1002/jcc.26029. [Epub ahead of print]

PMID:
31301183
2.

Identifying Physical Causes of Apparent Enhanced Cyclization of Short DNA Molecules with a Coarse-Grained Model.

Harrison RM, Romano F, Ouldridge TE, Louis AA, Doye JPK.

J Chem Theory Comput. 2019 Aug 13;15(8):4660-4672. doi: 10.1021/acs.jctc.9b00112. Epub 2019 Jul 22.

3.

NSTI Organisms and Regions: A Multicenter Study From the American Association for the Surgery of Trauma.

Louis A, Savage S, Utter GH, Li SW, Crandall M.

J Surg Res. 2019 Jun 3;243:108-113. doi: 10.1016/j.jss.2019.05.006. [Epub ahead of print]

PMID:
31170552
4.

A Novel Approach of Promoting Adhesion of Reinforcing Cord to Elastomers by Plasma Polymerization.

Dierkes W, Louis A, Noordermeer J, Blume A.

Polymers (Basel). 2019 Mar 29;11(4). pii: E577. doi: 10.3390/polym11040577.

5.

Risk Factors for Very Preterm Births in French Guiana: The Burden of Induced Preterm Birth.

Leneuve-Dorilas M, Favre A, Louis A, Bernard S, Carles G, Nacher M.

AJP Rep. 2019 Jan;9(1):e44-e53. doi: 10.1055/s-0039-1678716. Epub 2019 Mar 4.

6.

Coarse-grained modelling of the structural properties of DNA origami.

Snodin BEK, Schreck JS, Romano F, Louis AA, Doye JPK.

Nucleic Acids Res. 2019 Feb 20;47(3):1585-1597. doi: 10.1093/nar/gky1304.

7.

The EGS grading scale for skin and soft-tissue infections is predictive of poor outcomes: a multicenter validation study.

Savage SA, Li SW, Utter GH, Cox JA, Wydo SM, Cahill K, Sarani B, Holzmacher J, Duane TM, Gandhi RR, Zielinski MD, Ray-Zack M, Tierney J, Chapin T, Murphy PB, Vogt KN, Schroeppel TJ, Callaghan E, Kobayashi L, Coimbra R, Schuster KM, Gillaspie D, Timsina L, Louis A, Crandall M.

J Trauma Acute Care Surg. 2019 Apr;86(4):601-608. doi: 10.1097/TA.0000000000002175.

PMID:
30601458
8.

Amphioxus functional genomics and the origins of vertebrate gene regulation.

Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, Jimenez-Gancedo S, Aldea D, Marquez Y, Buono L, Kozmikova I, Permanyer J, Louis A, Albuixech-Crespo B, Le Petillon Y, Leon A, Subirana L, Balwierz PJ, Duckett PE, Farahani E, Aury JM, Mangenot S, Wincker P, Albalat R, Benito-Gutiérrez È, Cañestro C, Castro F, D'Aniello S, Ferrier DEK, Huang S, Laudet V, Marais GAB, Pontarotti P, Schubert M, Seitz H, Somorjai I, Takahashi T, Mirabeau O, Xu A, Yu JK, Carninci P, Martinez-Morales JR, Crollius HR, Kozmik Z, Weirauch MT, Garcia-Fernàndez J, Lister R, Lenhard B, Holland PWH, Escriva H, Gómez-Skarmeta JL, Irimia M.

Nature. 2018 Dec;564(7734):64-70. doi: 10.1038/s41586-018-0734-6. Epub 2018 Nov 21.

9.

Predictive factors of preterm delivery in French Guiana for singleton pregnancies: definition and validation of a predictive score.

Leneuve-Dorilas M, Buekens P, Favre A, Carles G, Louis A, Breart G, Nacher M.

J Matern Fetal Neonatal Med. 2018 Nov 4:1-8. doi: 10.1080/14767058.2018.1527898. [Epub ahead of print]

PMID:
30394157
10.

Chromosome evolution at the origin of the ancestral vertebrate genome.

Sacerdot C, Louis A, Bon C, Berthelot C, Roest Crollius H.

Genome Biol. 2018 Oct 17;19(1):166. doi: 10.1186/s13059-018-1559-1.

11.

Pre-imaginal conditioning alters adult sex pheromone response in Drosophila.

Everaerts C, Cazalé-Debat L, Louis A, Pereira E, Farine JP, Cobb M, Ferveur JF.

PeerJ. 2018 Sep 27;6:e5585. doi: 10.7717/peerj.5585. eCollection 2018.

12.

The Influence of Radiotherapy on the Mechanical Properties of Silicone Breast Implants.

Bachour Y, Oei LJ, Van der Veen AJ, Vos BE, Louis A, Heukelom S, Ritt MJPF, Niessen FB, Koken PW, Winters HAH.

Plast Reconstr Surg Glob Open. 2018 Jul 13;6(7):e1772. doi: 10.1097/GOX.0000000000001772. eCollection 2018 Jul.

13.

A touch of awe: crafting meaning from the wonder of the cosmos.

Paulson S, Davies P, Louis A, Walkowicz L.

Ann N Y Acad Sci. 2018 Nov;1432(1):46-62. doi: 10.1111/nyas.13875. Epub 2018 Aug 18.

PMID:
30120888
14.

A Comparison of Iron Oxide Particles and Silica Particles for Tracking Organ Recellularization.

Kobes JE, Georgiev GI, Louis AV, Calderon IA, Yoshimaru ES, Klemm LM, Cromey DW, Khalpey Z, Pagel MD.

Mol Imaging. 2018 Jan-Dec;17:1536012118787322. doi: 10.1177/1536012118787322.

15.

Zygomatico-coronoid Ankylosis as Sequel of Inadequate Treatment.

Dhupar V, Akkara F, Khandelwal P, Louis A.

Ann Maxillofac Surg. 2018 Jan-Jun;8(1):158-161. doi: 10.4103/ams.ams_107_15.

16.

Traumatic pseudoaneurysm of the superficial temporal artery.

Khandelwal P, Akkara F, Dhupar V, Louis A.

Natl J Maxillofac Surg. 2018 Jan-Jun;9(1):74-77. doi: 10.4103/njms.NJMS_64_15.

17.

Force-Induced Unravelling of DNA Origami.

Engel MC, Smith DM, Jobst MA, Sajfutdinow M, Liedl T, Romano F, Rovigatti L, Louis AA, Doye JPK.

ACS Nano. 2018 Jul 24;12(7):6734-6747. doi: 10.1021/acsnano.8b01844. Epub 2018 Jun 18.

PMID:
29851456
18.

Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly.

Fonseca P, Romano F, Schreck JS, Ouldridge TE, Doye JPK, Louis AA.

J Chem Phys. 2018 Apr 7;148(13):134910. doi: 10.1063/1.5019344.

19.

Input-output maps are strongly biased towards simple outputs.

Dingle K, Camargo CQ, Louis AA.

Nat Commun. 2018 Feb 22;9(1):761. doi: 10.1038/s41467-018-03101-6.

20.

ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.

Brozovic M, Dantec C, Dardaillon J, Dauga D, Faure E, Gineste M, Louis A, Naville M, Nitta KR, Piette J, Reeves W, Scornavacca C, Simion P, Vincentelli R, Bellec M, Aicha SB, Fagotto M, Guéroult-Bellone M, Haeussler M, Jacox E, Lowe EK, Mendez M, Roberge A, Stolfi A, Yokomori R, Brown CT, Cambillau C, Christiaen L, Delsuc F, Douzery E, Dumollard R, Kusakabe T, Nakai K, Nishida H, Satou Y, Swalla B, Veeman M, Volff JN, Lemaire P.

Nucleic Acids Res. 2018 Jan 4;46(D1):D718-D725. doi: 10.1093/nar/gkx1108.

21.

Risk factors for premature birth in French Guiana: the importance of reducing health inequalities.

Leneuve-Dorilas M, Favre A, Carles G, Louis A, Nacher M.

J Matern Fetal Neonatal Med. 2019 Apr;32(8):1388-1396. doi: 10.1080/14767058.2017.1403578. Epub 2017 Nov 27.

22.

Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing.

Nguyen NTT, Vincens P, Roest Crollius H, Louis A.

Nucleic Acids Res. 2018 Jan 4;46(D1):D816-D822. doi: 10.1093/nar/gkx1003.

23.

Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation.

Chica C, Louis A, Roest Crollius H, Colot V, Roudier F.

Genome Biol. 2017 Oct 31;18(1):207. doi: 10.1186/s13059-017-1333-9.

24.

Characterizing the Motion of Jointed DNA Nanostructures Using a Coarse-Grained Model.

Sharma R, Schreck JS, Romano F, Louis AA, Doye JPK.

ACS Nano. 2017 Dec 26;11(12):12426-12435. doi: 10.1021/acsnano.7b06470. Epub 2017 Nov 3.

PMID:
29083876
25.

X-autosome and X-Y Translocations in Female Carriers: X-chromosome Inactivation Easily Detectable by 5-ethynyl-2-deoxyuridine (EdU).

Donat M, Louis A, Kreskowski K, Ziegler M, Weise A, Schreyer I, Liehr T.

Balkan J Med Genet. 2017 Jun 30;20(1):87-90. doi: 10.1515/bjmg-2017-0012. eCollection 2017 Jun 30.

26.

Psychological distress and lifestyle disruption in low-risk prostate cancer patients: Comparison between active surveillance and radical prostatectomy.

Matthew AG, Raz O, Currie KL, Louis AS, Jiang H, Davidson T, Fleshner NE, Finelli A, Trachtenberg J.

J Psychosoc Oncol. 2018 Mar-Apr;36(2):159-174. doi: 10.1080/07347332.2017.1342733. Epub 2017 Aug 8.

PMID:
28613997
27.

Improved metabolism and redox state with a novel preservation solution: implications for donor lungs after cardiac death (DCD).

Schipper DA, Louis AV, Dicken DS, Johnson K, Smolenski RT, Black SM, Runyan R, Konhilas J, Garcia JGN, Khalpey Z.

Pulm Circ. 2017 Apr-Jun;7(2):494-504. doi: 10.1177/2045893217706065. Epub 2017 May 24.

28.

Spherically symmetric volume elements as basis functions for image reconstructions in computed laminography.

Trampert P, Vogelgesang J, Schorr C, Maisl M, Bogachev S, Marniok N, Louis A, Dahmen T, Slusallek P.

J Xray Sci Technol. 2017 Mar 21. doi: 10.3233/XST-16230. [Epub ahead of print]

PMID:
28339423
29.

Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation.

Sutthibutpong T, Matek C, Benham C, Slade GG, Noy A, Laughton C, K Doye JP, Louis AA, Harris SA.

Nucleic Acids Res. 2016 Nov 2;44(19):9121-9130. Epub 2016 Sep 22.

30.

Screening Hospitalized Patients for Low Health Literacy: Beyond the REALM of Possibility?

Louis AJ, Arora VM, Matthiesen MI, Meltzer DO, Press VG.

Health Educ Behav. 2017 Jun;44(3):360-364. doi: 10.1177/1090198116661478. Epub 2016 Aug 17.

31.

Numerical rate function determination in partial differential equations modeling cell population dynamics.

Groh A, Kohr H, Louis AK.

J Math Biol. 2017 Feb;74(3):533-565. doi: 10.1007/s00285-016-1032-2. Epub 2016 Jun 13.

PMID:
27295108
32.

Analysis of subsets of B cells, Breg, CD4Treg and CD8Treg cells in adult patients with primary selective IgM deficiency.

Louis AG, Agrawal S, Gupta S.

Am J Clin Exp Immunol. 2016 Mar 23;5(1):21-32. eCollection 2016.

33.

Erratum to: Understanding Brassicaceae evolution through ancestral genome reconstruction.

Murat F, Louis A, Maumus F, Armero A, Cook R, Quesneville H, Roest Crollius H, Salse J.

Genome Biol. 2016 Apr 4;17:64. doi: 10.1186/s13059-016-0887-2. No abstract available.

34.

Characterizing DNA Star-Tile-Based Nanostructures Using a Coarse-Grained Model.

Schreck JS, Romano F, Zimmer MH, Louis AA, Doye JP.

ACS Nano. 2016 Apr 26;10(4):4236-47. doi: 10.1021/acsnano.5b07664. Epub 2016 Mar 30.

PMID:
27010928
35.

Genetic Correlations Greatly Increase Mutational Robustness and Can Both Reduce and Enhance Evolvability.

Greenbury SF, Schaper S, Ahnert SE, Louis AA.

PLoS Comput Biol. 2016 Mar 3;12(3):e1004773. doi: 10.1371/journal.pcbi.1004773. eCollection 2016 Mar.

36.

Common variable immunodeficiency associated with microdeletion of chromosome 1q42.1-q42.3 and inositol 1,4,5-trisphosphate kinase B (ITPKB) deficiency.

Louis AG, Yel L, Cao JN, Agrawal S, Gupta S.

Clin Transl Immunology. 2016 Jan 22;5(1):e59. doi: 10.1038/cti.2015.41. eCollection 2016 Jan.

37.

Contingency, convergence and hyper-astronomical numbers in biological evolution.

Louis AA.

Stud Hist Philos Biol Biomed Sci. 2016 Aug;58:107-16. doi: 10.1016/j.shpsc.2015.12.014. Epub 2016 Feb 8.

PMID:
26868415
38.

Direct Simulation of the Self-Assembly of a Small DNA Origami.

Snodin BE, Romano F, Rovigatti L, Ouldridge TE, Louis AA, Doye JP.

ACS Nano. 2016 Feb 23;10(2):1724-37. doi: 10.1021/acsnano.5b05865. Epub 2016 Jan 22.

39.

Coarse-grained modelling of supercoiled RNA.

Matek C, Šulc P, Randisi F, Doye JP, Louis AA.

J Chem Phys. 2015 Dec 28;143(24):243122. doi: 10.1063/1.4933066.

PMID:
26723607
40.

Understanding Brassicaceae evolution through ancestral genome reconstruction.

Murat F, Louis A, Maumus F, Armero A, Cooke R, Quesneville H, Roest Crollius H, Salse J.

Genome Biol. 2015 Dec 10;16:262. doi: 10.1186/s13059-015-0814-y. Erratum in: Genome Biol. 2016;17(1):64.

41.

The structure of the genotype-phenotype map strongly constrains the evolution of non-coding RNA.

Dingle K, Schaper S, Louis AA.

Interface Focus. 2015 Dec 6;5(6):20150053. doi: 10.1098/rsfs.2015.0053.

42.

Force-Induced Rupture of a DNA Duplex: From Fundamentals to Force Sensors.

Mosayebi M, Louis AA, Doye JP, Ouldridge TE.

ACS Nano. 2015 Dec 22;9(12):11993-2003. doi: 10.1021/acsnano.5b04726. Epub 2015 Nov 30.

43.
44.

Epidemiology of Traumatic Injuries in the Northeast Region of Haiti: A Cross-sectional Study.

Aluisio AR, De Wulf A, Louis A, Bloem C.

Prehosp Disaster Med. 2015 Dec;30(6):599-605. doi: 10.1017/S1049023X15005361. Epub 2015 Nov 9.

PMID:
26548802
45.

Health-related quality of life in robotic versus open radical prostatectomy.

Rush S, Alibhai SM, Xu L, Xu W, Louis AS, Matthew AG, Nesbitt M, Finelli A, Fleshner NE, Hamilton RJ, Kulkarni G, Zlotta A, Jewett MA, Trachtenberg J.

Can Urol Assoc J. 2015 May-Jun;9(5-6):179-87. doi: 10.5489/cuaj.2618.

46.

Importance of Clinical and Radiological Parameters in Assessment of Surgical Difficulty in Removal of Impacted Mandibular 3rd Molars: A New Index.

Roy I, Baliga SD, Louis A, Rao S.

J Maxillofac Oral Surg. 2015 Sep;14(3):745-9. doi: 10.1007/s12663-014-0731-8. Epub 2014 Dec 24.

47.

Real-Time MRI-Guided Focused Ultrasound for Focal Therapy of Locally Confined Low-Risk Prostate Cancer: Feasibility and Preliminary Outcomes.

Ghai S, Louis AS, Van Vliet M, Lindner U, Haider MA, Hlasny E, Spensieri P, Van Der Kwast TH, McCluskey SA, Kucharczyk W, Trachtenberg J.

AJR Am J Roentgenol. 2015 Aug;205(2):W177-84. doi: 10.2214/AJR.14.13098.

PMID:
26204305
48.

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.

Snodin BE, Randisi F, Mosayebi M, Šulc P, Schreck JS, Romano F, Ouldridge TE, Tsukanov R, Nir E, Louis AA, Doye JP.

J Chem Phys. 2015 Jun 21;142(23):234901. doi: 10.1063/1.4921957.

49.

DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization.

Schreck JS, Ouldridge TE, Romano F, Šulc P, Shaw LP, Louis AA, Doye JP.

Nucleic Acids Res. 2015 Jul 27;43(13):6181-90. doi: 10.1093/nar/gkv582. Epub 2015 Jun 8.

50.

When is rotational angiography superior to conventional single-plane angiography for planning coronary angioplasty?

Morris PD, Taylor J, Boutong S, Brett S, Louis A, Heppenstall J, Morton AC, Gunn JP.

Catheter Cardiovasc Interv. 2016 Mar;87(4):E104-12. doi: 10.1002/ccd.26032. Epub 2015 May 27.

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