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Items: 1 to 50 of 66

1.

The complex genetic architecture of shoot growth natural variation in Arabidopsis thaliana.

Marchadier E, Hanemian M, Tisné S, Bach L, Bazakos C, Gilbault E, Haddadi P, Virlouvet L, Loudet O.

PLoS Genet. 2019 Apr 22;15(4):e1007954. doi: 10.1371/journal.pgen.1007954. eCollection 2019 Apr.

2.

Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.

Tang N, Shahzad Z, Lonjon F, Loudet O, Vailleau F, Maurel C.

Nat Commun. 2018 Sep 24;9(1):3884. doi: 10.1038/s41467-018-06430-8.

3.

High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell.

Michael TP, Jupe F, Bemm F, Motley ST, Sandoval JP, Lanz C, Loudet O, Weigel D, Ecker JR.

Nat Commun. 2018 Feb 7;9(1):541. doi: 10.1038/s41467-018-03016-2.

4.

Abiotic stress, stress combinations and crop improvement potential.

Loudet O, Hasegawa PM.

Plant J. 2017 Jun;90(5):837-838. doi: 10.1111/tpj.13604. No abstract available.

5.

New Strategies and Tools in Quantitative Genetics: How to Go from the Phenotype to the Genotype.

Bazakos C, Hanemian M, Trontin C, Jiménez-Gómez JM, Loudet O.

Annu Rev Plant Biol. 2017 Apr 28;68:435-455. doi: 10.1146/annurev-arplant-042916-040820. Epub 2017 Feb 6. Review.

PMID:
28226236
6.

Leaf Segmentation and Tracking in Arabidopsis thaliana Combined to an Organ-Scale Plant Model for Genotypic Differentiation.

Viaud G, Loudet O, Cournède PH.

Front Plant Sci. 2017 Jan 11;7:2057. doi: 10.3389/fpls.2016.02057. eCollection 2016.

7.

An Arabidopsis Natural Epiallele Maintained by a Feed-Forward Silencing Loop between Histone and DNA.

Agorio A, Durand S, Fiume E, Brousse C, Gy I, Simon M, Anava S, Rechavi O, Loudet O, Camilleri C, Bouché N.

PLoS Genet. 2017 Jan 6;13(1):e1006551. doi: 10.1371/journal.pgen.1006551. eCollection 2017 Jan.

8.

AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.

Nijveen H, Ligterink W, Keurentjes JJ, Loudet O, Long J, Sterken MG, Prins P, Hilhorst HW, de Ridder D, Kammenga JE, Snoek BL.

Plant J. 2017 Mar;89(6):1225-1235. doi: 10.1111/tpj.13457. Epub 2017 Feb 13.

9.

A Potassium-Dependent Oxygen Sensing Pathway Regulates Plant Root Hydraulics.

Shahzad Z, Canut M, Tournaire-Roux C, Martinière A, Boursiac Y, Loudet O, Maurel C.

Cell. 2016 Sep 22;167(1):87-98.e14. doi: 10.1016/j.cell.2016.08.068. Epub 2016 Sep 15.

10.

Extensive cis-regulatory variation robust to environmental perturbation in Arabidopsis.

Cubillos FA, Stegle O, Grondin C, Canut M, Tisné S, Gy I, Loudet O.

Plant Cell. 2014 Nov;26(11):4298-310. doi: 10.1105/tpc.114.130310. Epub 2014 Nov 26.

11.

Editorial Overview: Genome studies and molecular genetics: Genomic approaches to understanding evolution, development and the plant phenome.

Bomblies K, Loudet O.

Curr Opin Plant Biol. 2014 Apr;18:v-vi. doi: 10.1016/j.pbi.2014.03.005. Epub 2014 Mar 28. No abstract available.

PMID:
24685907
12.

Local evolution of seed flotation in Arabidopsis.

Saez-Aguayo S, Rondeau-Mouro C, Macquet A, Kronholm I, Ralet MC, Berger A, Sallé C, Poulain D, Granier F, Botran L, Loudet O, de Meaux J, Marion-Poll A, North HM.

PLoS Genet. 2014 Mar 13;10(3):e1004221. doi: 10.1371/journal.pgen.1004221. eCollection 2014 Mar.

13.

A pair of receptor-like kinases is responsible for natural variation in shoot growth response to mannitol treatment in Arabidopsis thaliana.

Trontin C, Kiani S, Corwin JA, Hématy K, Yansouni J, Kliebenstein DJ, Loudet O.

Plant J. 2014 Apr;78(1):121-33. doi: 10.1111/tpj.12454. Epub 2014 Mar 18. Erratum in: Plant J. 2014 Oct;80(2):382-4. Plant J. 2014 Oct;80(2):382-384.

14.

SHOOT GROWTH1 maintains Arabidopsis epigenomes by regulating IBM1.

Coustham V, Vlad D, Deremetz A, Gy I, Cubillos FA, Kerdaffrec E, Loudet O, Bouché N.

PLoS One. 2014 Jan 3;9(1):e84687. doi: 10.1371/journal.pone.0084687. eCollection 2014.

15.

Natural variation in the ATPS1 isoform of ATP sulfurylase contributes to the control of sulfate levels in Arabidopsis.

Koprivova A, Giovannetti M, Baraniecka P, Lee BR, Grondin C, Loudet O, Kopriva S.

Plant Physiol. 2013 Nov;163(3):1133-41. doi: 10.1104/pp.113.225748. Epub 2013 Sep 11.

16.

Extensive natural epigenetic variation at a de novo originated gene.

Silveira AB, Trontin C, Cortijo S, Barau J, Del Bem LE, Loudet O, Colot V, Vincentz M.

PLoS Genet. 2013 Apr;9(4):e1003437. doi: 10.1371/journal.pgen.1003437. Epub 2013 Apr 11.

17.

Leaf fructose content is controlled by the vacuolar transporter SWEET17 in Arabidopsis.

Chardon F, Bedu M, Calenge F, Klemens PA, Spinner L, Clement G, Chietera G, Léran S, Ferrand M, Lacombe B, Loudet O, Dinant S, Bellini C, Neuhaus HE, Daniel-Vedele F, Krapp A.

Curr Biol. 2013 Apr 22;23(8):697-702. doi: 10.1016/j.cub.2013.03.021. Epub 2013 Apr 11.

18.

Phenoscope: an automated large-scale phenotyping platform offering high spatial homogeneity.

Tisné S, Serrand Y, Bach L, Gilbault E, Ben Ameur R, Balasse H, Voisin R, Bouchez D, Durand-Tardif M, Guerche P, Chareyron G, Da Rugna J, Camilleri C, Loudet O.

Plant J. 2013 May;74(3):534-44. doi: 10.1111/tpj.12131. Epub 2013 Mar 16.

19.

Natural variation at the FRD3 MATE transporter locus reveals cross-talk between Fe homeostasis and Zn tolerance in Arabidopsis thaliana.

Pineau C, Loubet S, Lefoulon C, Chalies C, Fizames C, Lacombe B, Ferrand M, Loudet O, Berthomieu P, Richard O.

PLoS Genet. 2012;8(12):e1003120. doi: 10.1371/journal.pgen.1003120. Epub 2012 Dec 6.

20.

Natural variation in seed very long chain fatty acid content is controlled by a new isoform of KCS18 in Arabidopsis thaliana.

Jasinski S, Lécureuil A, Miquel M, Loudet O, Raffaele S, Froissard M, Guerche P.

PLoS One. 2012;7(11):e49261. doi: 10.1371/journal.pone.0049261. Epub 2012 Nov 8.

21.

Allelic heterogeneity and trade-off shape natural variation for response to soil micronutrient.

Poormohammad Kiani S, Trontin C, Andreatta M, Simon M, Robert T, Salt DE, Loudet O.

PLoS Genet. 2012;8(7):e1002814. doi: 10.1371/journal.pgen.1002814. Epub 2012 Jul 12.

22.

Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures.

Cubillos FA, Yansouni J, Khalili H, Balzergue S, Elftieh S, Martin-Magniette ML, Serrand Y, Lepiniec L, Baud S, Dubreucq B, Renou JP, Camilleri C, Loudet O.

BMC Genomics. 2012 Mar 27;13:117. doi: 10.1186/1471-2164-13-117.

23.

Metabolite profiling and quantitative genetics of natural variation for flavonoids in Arabidopsis.

Routaboul JM, Dubos C, Beck G, Marquis C, Bidzinski P, Loudet O, Lepiniec L.

J Exp Bot. 2012 Jun;63(10):3749-64. doi: 10.1093/jxb/ers067. Epub 2012 Mar 22.

24.

Disentangling the intertwined genetic bases of root and shoot growth in Arabidopsis.

Bouteillé M, Rolland G, Balsera C, Loudet O, Muller B.

PLoS One. 2012;7(2):e32319. doi: 10.1371/journal.pone.0032319. Epub 2012 Feb 24.

25.

Rapid establishment of genetic incompatibility through natural epigenetic variation.

Durand S, Bouché N, Perez Strand E, Loudet O, Camilleri C.

Curr Biol. 2012 Feb 21;22(4):326-31. doi: 10.1016/j.cub.2011.12.054. Epub 2012 Jan 26.

26.

Lessons from eQTL mapping studies: non-coding regions and their role behind natural phenotypic variation in plants.

Cubillos FA, Coustham V, Loudet O.

Curr Opin Plant Biol. 2012 Apr;15(2):192-8. doi: 10.1016/j.pbi.2012.01.005. Epub 2012 Jan 20. Review.

PMID:
22265229
27.

DNA fingerprinting and new tools for fine-scale discrimination of Arabidopsis thaliana accessions.

Simon M, Simon A, Martins F, Botran L, Tisné S, Granier F, Loudet O, Camilleri C.

Plant J. 2012 Mar;69(6):1094-101. doi: 10.1111/j.1365-313X.2011.04852.x. Epub 2011 Dec 28.

28.

What does Arabidopsis natural variation teach us (and does not teach us) about adaptation in plants?

Trontin C, Tisné S, Bach L, Loudet O.

Curr Opin Plant Biol. 2011 Jun;14(3):225-31. doi: 10.1016/j.pbi.2011.03.024. Epub 2011 Apr 30. Review.

PMID:
21536479
29.

Gene transposition causing natural variation for growth in Arabidopsis thaliana.

Vlad D, Rappaport F, Simon M, Loudet O.

PLoS Genet. 2010 May 13;6(5):e1000945. doi: 10.1371/journal.pgen.1000945.

30.

Influence of mutation rate on estimators of genetic differentiation--lessons from Arabidopsis thaliana.

Kronholm I, Loudet O, de Meaux J.

BMC Genet. 2010 May 1;11:33. doi: 10.1186/1471-2156-11-33. Erratum in: BMC Genet. 2010;11:88.

31.

The scale of population structure in Arabidopsis thaliana.

Platt A, Horton M, Huang YS, Li Y, Anastasio AE, Mulyati NW, Agren J, Bossdorf O, Byers D, Donohue K, Dunning M, Holub EB, Hudson A, Le Corre V, Loudet O, Roux F, Warthmann N, Weigel D, Rivero L, Scholl R, Nordborg M, Bergelson J, Borevitz JO.

PLoS Genet. 2010 Feb 12;6(2):e1000843. doi: 10.1371/journal.pgen.1000843.

32.

QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines.

Balasubramanian S, Schwartz C, Singh A, Warthmann N, Kim MC, Maloof JN, Loudet O, Trainer GT, Dabi T, Borevitz JO, Chory J, Weigel D.

PLoS One. 2009;4(2):e4318. doi: 10.1371/journal.pone.0004318. Epub 2009 Feb 2.

33.

Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana.

Bikard D, Patel D, Le Metté C, Giorgi V, Camilleri C, Bennett MJ, Loudet O.

Science. 2009 Jan 30;323(5914):623-6. doi: 10.1126/science.1165917.

34.

A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana.

Loudet O, Michael TP, Burger BT, Le Metté C, Mockler TC, Weigel D, Chory J.

Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):17193-8. doi: 10.1073/pnas.0807264105. Epub 2008 Oct 29.

35.

Quantitative trait loci mapping in five new large recombinant inbred line populations of Arabidopsis thaliana genotyped with consensus single-nucleotide polymorphism markers.

Simon M, Loudet O, Durand S, Bérard A, Brunel D, Sennesal FX, Durand-Tardif M, Pelletier G, Camilleri C.

Genetics. 2008 Apr;178(4):2253-64. doi: 10.1534/genetics.107.083899.

36.

Identification of quantitative trait loci controlling symptom development during viral infection in Arabidopsis thaliana.

Sicard O, Loudet O, Keurentjes JJ, Candresse T, Le Gall O, Revers F, Decroocq V.

Mol Plant Microbe Interact. 2008 Feb;21(2):198-207. doi: 10.1094/MPMI-21-2-0198.

37.

A naturally occurring mutation in an Arabidopsis accession affects a beta-D-galactosidase that increases the hydrophilic potential of rhamnogalacturonan I in seed mucilage.

Macquet A, Ralet MC, Loudet O, Kronenberger J, Mouille G, Marion-Poll A, North HM.

Plant Cell. 2007 Dec;19(12):3990-4006. doi: 10.1105/tpc.107.050179. Epub 2007 Dec 28.

38.

Analysis of natural allelic variation controlling Arabidopsis thaliana seed germinability in response to cold and dark: identification of three major quantitative trait loci.

Meng PH, Macquet A, Loudet O, Marion-Poll A, North HM.

Mol Plant. 2008 Jan;1(1):145-54. doi: 10.1093/mp/ssm014. Epub 2007 Oct 29.

39.

Natural variation for sulfate content in Arabidopsis thaliana is highly controlled by APR2.

Loudet O, Saliba-Colombani V, Camilleri C, Calenge F, Gaudon V, Koprivova A, North KA, Kopriva S, Daniel-Vedele F.

Nat Genet. 2007 Jul;39(7):896-900. Epub 2007 Jun 24.

PMID:
17589509
40.
41.

Identification of QTL controlling root growth response to phosphate starvation in Arabidopsis thaliana.

Reymond M, Svistoonoff S, Loudet O, Nussaume L, Desnos T.

Plant Cell Environ. 2006 Jan;29(1):115-25.

42.

Natural variation for carbohydrate content in Arabidopsis. Interaction with complex traits dissected by quantitative genetics.

Calenge F, Saliba-Colombani V, Mahieu S, Loudet O, Daniel-Vedele F, Krapp A.

Plant Physiol. 2006 Aug;141(4):1630-43. Epub 2006 Jun 23.

43.

Identification of QTLs controlling gene expression networks defined a priori.

Kliebenstein DJ, West MA, van Leeuwen H, Loudet O, Doerge RW, St Clair DA.

BMC Bioinformatics. 2006 Jun 16;7:308.

44.

Quantitative trait loci analysis of primary cell wall composition in Arabidopsis.

Mouille G, Witucka-Wall H, Bruyant MP, Loudet O, Pelletier S, Rihouey C, Lerouxel O, Lerouge P, Höfte H, Pauly M.

Plant Physiol. 2006 Jul;141(3):1035-44. Epub 2006 May 19.

45.

Leaf yellowing and anthocyanin accumulation are two genetically independent strategies in response to nitrogen limitation in Arabidopsis thaliana.

Diaz C, Saliba-Colombani V, Loudet O, Belluomo P, Moreau L, Daniel-Vedele F, Morot-Gaudry JF, Masclaux-Daubresse C.

Plant Cell Physiol. 2006 Jan;47(1):74-83. Epub 2005 Nov 12.

PMID:
16284408
46.

[Aging and civil competence: medico-legal note. 1929].

Borda JT, Loudet O.

Vertex. 2005 May-Jun;16(61):222-7. Spanish. No abstract available.

PMID:
15957017
47.

Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family.

Loudet O, Gaudon V, Trubuil A, Daniel-Vedele F.

Theor Appl Genet. 2005 Feb;110(4):742-53. Epub 2005 Jan 28.

PMID:
15678326
48.

Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana.

Wolyn DJ, Borevitz JO, Loudet O, Schwartz C, Maloof J, Ecker JR, Berry CC, Chory J.

Genetics. 2004 Jun;167(2):907-17.

49.
50.

Bay-0 x Shahdara recombinant inbred line population: a powerful tool for the genetic dissection of complex traits in Arabidopsis.

Loudet O, Chaillou S, Camilleri C, Bouchez D, Daniel-Vedele F.

Theor Appl Genet. 2002 May;104(6-7):1173-1184. Epub 2002 Feb 13.

PMID:
12582628

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