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Items: 48

1.

ZFP57 regulation of transposable elements and gene expression within and beyond imprinted domains.

Shi H, Strogantsev R, Takahashi N, Kazachenka A, Lorincz MC, Hemberger M, Ferguson-Smith AC.

Epigenetics Chromatin. 2019 Aug 9;12(1):49. doi: 10.1186/s13072-019-0295-4.

2.

SETD2 regulates the maternal epigenome, genomic imprinting and embryonic development.

Xu Q, Xiang Y, Wang Q, Wang L, Brind'Amour J, Bogutz AB, Zhang Y, Zhang B, Yu G, Xia W, Du Z, Huang C, Ma J, Zheng H, Li Y, Liu C, Walker CL, Jonasch E, Lefebvre L, Wu M, Lorincz MC, Li W, Li L, Xie W.

Nat Genet. 2019 May;51(5):844-856. doi: 10.1038/s41588-019-0398-7. Epub 2019 Apr 29.

PMID:
31040401
3.

Histone H3K9 Methyltransferase G9a in Oocytes Is Essential for Preimplantation Development but Dispensable for CG Methylation Protection.

Au Yeung WK, Brind'Amour J, Hatano Y, Yamagata K, Feil R, Lorincz MC, Tachibana M, Shinkai Y, Sasaki H.

Cell Rep. 2019 Apr 2;27(1):282-293.e4. doi: 10.1016/j.celrep.2019.03.002.

4.

LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation.

Brind'Amour J, Kobayashi H, Richard Albert J, Shirane K, Sakashita A, Kamio A, Bogutz A, Koike T, Karimi MM, Lefebvre L, Kono T, Lorincz MC.

Nat Commun. 2018 Aug 20;9(1):3331. doi: 10.1038/s41467-018-05841-x.

5.

Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA).

Richard Albert J, Koike T, Younesy H, Thompson R, Bogutz AB, Karimi MM, Lorincz MC.

BMC Genomics. 2018 Jun 15;19(1):463. doi: 10.1186/s12864-018-4835-2.

6.

HP1 proteins safeguard embryonic stem cells.

Jensen KN, Lorincz MC.

Nature. 2018 May;557(7707):640-641. doi: 10.1038/d41586-018-05188-9. No abstract available.

PMID:
29805158
7.

H3S10ph broadly marks early-replicating domains in interphase ESCs and shows reciprocal antagonism with H3K9me2.

Chen CCL, Goyal P, Karimi MM, Abildgaard MH, Kimura H, Lorincz MC.

Genome Res. 2018 Jan;28(1):37-51. doi: 10.1101/gr.224717.117. Epub 2017 Dec 11.

8.

Evidence for Converging DNA Methylation Pathways in Placenta and Cancer.

Lorincz MC, Schübeler D.

Dev Cell. 2017 Nov 6;43(3):257-258. doi: 10.1016/j.devcel.2017.10.009. Review.

9.

On the role of H3.3 in retroviral silencing.

Wolf G, Rebollo R, Karimi MM, Ewing AD, Kamada R, Wu W, Wu B, Bachu M, Ozato K, Faulkner GJ, Mager DL, Lorincz MC, Macfarlan TS.

Nature. 2017 Aug 2;548(7665):E1-E3. doi: 10.1038/nature23277. No abstract available.

10.

Epigenetic modifier drugs trigger widespread transcription of endogenous retroviruses.

Mager DL, Lorincz MC.

Nat Genet. 2017 Jun 28;49(7):974-975. doi: 10.1038/ng.3902.

PMID:
28656984
11.

ChAsE: chromatin analysis and exploration tool.

Younesy H, Nielsen CB, Lorincz MC, Jones SJ, Karimi MM, Möller T.

Bioinformatics. 2016 Nov 1;32(21):3324-3326. Epub 2016 Jul 4.

12.

Correction: hnRNP K Coordinates Transcriptional Silencing by SETDB1 in Embryonic Stem Cells.

Thompson PJ, Dulberg V, Moon KM, Foster LJ, Chen C, Karimi MM, Lorincz MC.

PLoS Genet. 2016 Oct 14;12(10):e1006390. doi: 10.1371/journal.pgen.1006390. eCollection 2016 Oct.

13.

Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire.

Thompson PJ, Macfarlan TS, Lorincz MC.

Mol Cell. 2016 Jun 2;62(5):766-76. doi: 10.1016/j.molcel.2016.03.029. Review.

14.

Activation of Endogenous Retroviruses in Dnmt1(-/-) ESCs Involves Disruption of SETDB1-Mediated Repression by NP95 Binding to Hemimethylated DNA.

Sharif J, Endo TA, Nakayama M, Karimi MM, Shimada M, Katsuyama K, Goyal P, Brind'Amour J, Sun MA, Sun Z, Ishikura T, Mizutani-Koseki Y, Ohara O, Shinkai Y, Nakanishi M, Xie H, Lorincz MC, Koseki H.

Cell Stem Cell. 2016 Jul 7;19(1):81-94. doi: 10.1016/j.stem.2016.03.013. Epub 2016 Apr 14.

15.

Systematic identification of factors for provirus silencing in embryonic stem cells.

Yang BX, El Farran CA, Guo HC, Yu T, Fang HT, Wang HF, Schlesinger S, Seah YF, Goh GY, Neo SP, Li Y, Lorincz MC, Tergaonkar V, Lim TM, Chen L, Gunaratne J, Collins JJ, Goff SP, Daley GQ, Li H, Bard FA, Loh YH.

Cell. 2015 Sep 24;163(1):230-45. doi: 10.1016/j.cell.2015.08.037. Epub 2015 Sep 10.

16.

VisRseq: R-based visual framework for analysis of sequencing data.

Younesy H, Möller T, Lorincz MC, Karimi MM, Jones SJ.

BMC Bioinformatics. 2015;16 Suppl 11:S2. doi: 10.1186/1471-2105-16-S11-S2. Epub 2015 Aug 13.

17.

hnRNP K coordinates transcriptional silencing by SETDB1 in embryonic stem cells.

Thompson PJ, Dulberg V, Moon KM, Foster LJ, Chen C, Karimi MM, Lorincz MC.

PLoS Genet. 2015 Jan 22;11(1):e1004933. doi: 10.1371/journal.pgen.1004933. eCollection 2015 Jan. Erratum in: PLoS Genet. 2016 Oct 14;12 (10 ):e1006390.

18.

An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations.

Brind'Amour J, Liu S, Hudson M, Chen C, Karimi MM, Lorincz MC.

Nat Commun. 2015 Jan 21;6:6033. doi: 10.1038/ncomms7033.

PMID:
25607992
19.

Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells.

Wang J, Xie G, Singh M, Ghanbarian AT, Raskó T, Szvetnik A, Cai H, Besser D, Prigione A, Fuchs NV, Schumann GG, Chen W, Lorincz MC, Ivics Z, Hurst LD, Izsvák Z.

Nature. 2014 Dec 18;516(7531):405-9. doi: 10.1038/nature13804. Epub 2014 Oct 15.

PMID:
25317556
20.

Setdb1 is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells.

Liu S, Brind'Amour J, Karimi MM, Shirane K, Bogutz A, Lefebvre L, Sasaki H, Shinkai Y, Lorincz MC.

Genes Dev. 2014 Sep 15;28(18):2041-55. doi: 10.1101/gad.244848.114. Erratum in: Genes Dev. 2015 Jan 1;29(1):108.

21.

Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1.

Leung D, Du T, Wagner U, Xie W, Lee AY, Goyal P, Li Y, Szulwach KE, Jin P, Lorincz MC, Ren B.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6690-5. doi: 10.1073/pnas.1322273111. Epub 2014 Apr 22.

22.

ALEA: a toolbox for allele-specific epigenomics analysis.

Younesy H, Möller T, Heravi-Moussavi A, Cheng JB, Costello JF, Lorincz MC, Karimi MM, Jones SJ.

Bioinformatics. 2014 Apr 15;30(8):1172-1174. Epub 2013 Dec 26.

PMID:
24371156
23.

Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.

Blaschke K, Ebata KT, Karimi MM, Zepeda-Martínez JA, Goyal P, Mahapatra S, Tam A, Laird DJ, Hirst M, Rao A, Lorincz MC, Ramalho-Santos M.

Nature. 2013 Aug 8;500(7461):222-6. doi: 10.1038/nature12362. Epub 2013 Jun 30.

24.

Kinetics and epigenetics of retroviral silencing in mouse embryonic stem cells defined by deletion of the D4Z4 element.

Rival-Gervier S, Lo MY, Khattak S, Pasceri P, Lorincz MC, Ellis J.

Mol Ther. 2013 Aug;21(8):1536-50. doi: 10.1038/mt.2013.131. Epub 2013 Jun 11.

25.

Distinct roles of KAP1, HP1 and G9a/GLP in silencing of the two-cell-specific retrotransposon MERVL in mouse ES cells.

Maksakova IA, Thompson PJ, Goyal P, Jones SJ, Singh PB, Karimi MM, Lorincz MC.

Epigenetics Chromatin. 2013 Jun 4;6(1):15. doi: 10.1186/1756-8935-6-15.

26.

Histone H3K4 demethylation is negatively regulated by histone H3 acetylation in Saccharomyces cerevisiae.

Maltby VE, Martin BJ, Brind'Amour J, Chruscicki AT, McBurney KL, Schulze JM, Johnson IJ, Hills M, Hentrich T, Kobor MS, Lorincz MC, Howe LJ.

Proc Natl Acad Sci U S A. 2012 Nov 6;109(45):18505-10. doi: 10.1073/pnas.1202070109. Epub 2012 Oct 22.

27.

Silencing of endogenous retroviruses: when and why do histone marks predominate?

Leung DC, Lorincz MC.

Trends Biochem Sci. 2012 Apr;37(4):127-33. doi: 10.1016/j.tibs.2011.11.006. Epub 2011 Dec 15.

PMID:
22178137
28.

Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms.

Rebollo R, Karimi MM, Bilenky M, Gagnier L, Miceli-Royer K, Zhang Y, Goyal P, Keane TM, Jones S, Hirst M, Lorincz MC, Mager DL.

PLoS Genet. 2011 Sep;7(9):e1002301. doi: 10.1371/journal.pgen.1002301. Epub 2011 Sep 29.

29.

H3K9me3-binding proteins are dispensable for SETDB1/H3K9me3-dependent retroviral silencing.

Maksakova IA, Goyal P, Bullwinkel J, Brown JP, Bilenky M, Mager DL, Singh PB, Lorincz MC.

Epigenetics Chromatin. 2011 Jul 20;4(1):12. doi: 10.1186/1756-8935-4-12.

30.

DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs.

Karimi MM, Goyal P, Maksakova IA, Bilenky M, Leung D, Tang JX, Shinkai Y, Mager DL, Jones S, Hirst M, Lorincz MC.

Cell Stem Cell. 2011 Jun 3;8(6):676-87. doi: 10.1016/j.stem.2011.04.004.

31.

Lysine methyltransferase G9a is required for de novo DNA methylation and the establishment, but not the maintenance, of proviral silencing.

Leung DC, Dong KB, Maksakova IA, Goyal P, Appanah R, Lee S, Tachibana M, Shinkai Y, Lehnertz B, Mager DL, Rossi F, Lorincz MC.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5718-23. doi: 10.1073/pnas.1014660108. Epub 2011 Mar 22.

32.

Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET.

Matsui T, Leung D, Miyashita H, Maksakova IA, Miyachi H, Kimura H, Tachibana M, Lorincz MC, Shinkai Y.

Nature. 2010 Apr 8;464(7290):927-31. doi: 10.1038/nature08858. Epub 2010 Feb 17. Erratum in: Nature. 2014 Sep 4;513(7516):128.

PMID:
20164836
33.

Targeting of EZH2 to a defined genomic site is sufficient for recruitment of Dnmt3a but not de novo DNA methylation.

Rush M, Appanah R, Lee S, Lam LL, Goyal P, Lorincz MC.

Epigenetics. 2009 Aug 16;4(6):404-14. Epub 2009 Aug 29.

PMID:
19717977
34.

H2A.Z and DNA methylation: irreconcilable differences.

Kobor MS, Lorincz MC.

Trends Biochem Sci. 2009 Apr;34(4):158-61. doi: 10.1016/j.tibs.2008.12.006. Epub 2009 Mar 11.

PMID:
19282182
35.

DNA methylation in ES cells requires the lysine methyltransferase G9a but not its catalytic activity.

Dong KB, Maksakova IA, Mohn F, Leung D, Appanah R, Lee S, Yang HW, Lam LL, Mager DL, Schübeler D, Tachibana M, Shinkai Y, Lorincz MC.

EMBO J. 2008 Oct 22;27(20):2691-701. doi: 10.1038/emboj.2008.193. Epub 2008 Sep 25.

36.

RNA polymerase II: just stopping by.

Lorincz MC, Schübeler D.

Cell. 2007 Jul 13;130(1):16-8.

37.

An unmethylated 3' promoter-proximal region is required for efficient transcription initiation.

Appanah R, Dickerson DR, Goyal P, Groudine M, Lorincz MC.

PLoS Genet. 2007 Feb 16;3(2):e27. Epub 2007 Jan 2.

38.

Dynamics, stability and inheritance of somatic DNA methylation imprints.

Sontag LB, Lorincz MC, Georg Luebeck E.

J Theor Biol. 2006 Oct 21;242(4):890-9. Epub 2006 May 20.

PMID:
16806276
39.

Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells.

Lorincz MC, Dickerson DR, Schmitt M, Groudine M.

Nat Struct Mol Biol. 2004 Nov;11(11):1068-75. Epub 2004 Oct 3.

PMID:
15467727
40.

DNA methylation density influences the stability of an epigenetic imprint and Dnmt3a/b-independent de novo methylation.

Lorincz MC, Schübeler D, Hutchinson SR, Dickerson DR, Groudine M.

Mol Cell Biol. 2002 Nov;22(21):7572-80.

41.

Targeting silence: the use of site-specific recombination to introduce in vitro methylated DNA into the genome.

Schübeler D, Lorincz MC, Groudine M.

Sci STKE. 2001 May 22;2001(83):pl1.

PMID:
11752652
42.
43.

C(m)C(a/t)GG methylation: a new epigenetic mark in mammalian DNA?

Lorincz MC, Groudine M.

Proc Natl Acad Sci U S A. 2001 Aug 28;98(18):10034-6. No abstract available.

44.

Position effects are influenced by the orientation of a transgene with respect to flanking chromatin.

Feng YQ, Lorincz MC, Fiering S, Greally JM, Bouhassira EE.

Mol Cell Biol. 2001 Jan;21(1):298-309.

45.

Genomic targeting of methylated DNA: influence of methylation on transcription, replication, chromatin structure, and histone acetylation.

Schübeler D, Lorincz MC, Cimbora DM, Telling A, Feng YQ, Bouhassira EE, Groudine M.

Mol Cell Biol. 2000 Dec;20(24):9103-12.

47.
48.

Simultaneous fluorescence-activated cell sorter analysis of two distinct transcriptional elements within a single cell using engineered green fluorescent proteins.

Anderson MT, Tjioe IM, Lorincz MC, Parks DR, Herzenberg LA, Nolan GP, Herzenberg LA.

Proc Natl Acad Sci U S A. 1996 Aug 6;93(16):8508-11.

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