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Items: 27

1.

Arrestin-3 scaffolding of the JNK3 cascade suggests a mechanism for signal amplification.

Perry NA, Kaoud TS, Ortega OO, Kaya AI, Marcus DJ, Pleinis JM, Berndt S, Chen Q, Zhan X, Dalby KN, Lopez CF, Iverson TM, Gurevich VV.

Proc Natl Acad Sci U S A. 2019 Jan 15;116(3):810-815. doi: 10.1073/pnas.1819230116. Epub 2018 Dec 27.

PMID:
30591558
2.

PyDREAM: high-dimensional parameter inference for biological models in python.

Shockley EM, Vrugt JA, Lopez CF.

Bioinformatics. 2018 Feb 15;34(4):695-697. doi: 10.1093/bioinformatics/btx626.

3.

GPU-powered model analysis with PySB/cupSODA.

Harris LA, Nobile MS, Pino JC, Lubbock ALR, Besozzi D, Mauri G, Cazzaniga P, Lopez CF.

Bioinformatics. 2017 Nov 1;33(21):3492-3494. doi: 10.1093/bioinformatics/btx420.

4.

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.

Chifman J, Arat S, Deng Z, Lemler E, Pino JC, Harris LA, Kochen MA, Lopez CF, Akman SA, Torti FM, Torti SV, Laubenbacher R.

PLoS Comput Biol. 2017 Feb 6;13(2):e1005352. doi: 10.1371/journal.pcbi.1005352. eCollection 2017 Feb.

5.

Integrated, High-Throughput, Multiomics Platform Enables Data-Driven Construction of Cellular Responses and Reveals Global Drug Mechanisms of Action.

Norris JL, Farrow MA, Gutierrez DB, Palmer LD, Muszynski N, Sherrod SD, Pino JC, Allen JL, Spraggins JM, Lubbock AL, Jordan A, Burns W, Poland JC, Romer C, Manier ML, Nei YW, Prentice BM, Rose KL, Hill S, Van de Plas R, Tsui T, Braman NM, Keller MR, Rutherford SA, Lobdell N, Lopez CF, Lacy DB, McLean JA, Wikswo JP, Skaar EP, Caprioli RM.

J Proteome Res. 2017 Mar 3;16(3):1364-1375. doi: 10.1021/acs.jproteome.6b01004. Epub 2017 Feb 9.

PMID:
28088864
6.

An unbiased metric of antiproliferative drug effect in vitro.

Harris LA, Frick PL, Garbett SP, Hardeman KN, Paudel BB, Lopez CF, Quaranta V, Tyson DR.

Nat Methods. 2016 Jun;13(6):497-500. doi: 10.1038/nmeth.3852. Epub 2016 May 2.

7.

CASP11--An Evaluation of a Modular BCL::Fold-Based Protein Structure Prediction Pipeline.

Fischer AW, Heinze S, Putnam DK, Li B, Pino JC, Xia Y, Lopez CF, Meiler J.

PLoS One. 2016 Apr 5;11(4):e0152517. doi: 10.1371/journal.pone.0152517. eCollection 2016.

8.

Competition and allostery govern substrate selectivity of cyclooxygenase-2.

Mitchener MM, Hermanson DJ, Shockley EM, Brown HA, Lindsley CW, Reese J, Rouzer CA, Lopez CF, Marnett LJ.

Proc Natl Acad Sci U S A. 2015 Oct 6;112(40):12366-71. doi: 10.1073/pnas.1507307112. Epub 2015 Sep 21. Erratum in: Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):E1413.

9.

Rule-based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems.

Chylek LA, Harris LA, Tung CS, Faeder JR, Lopez CF, Hlavacek WS.

Wiley Interdiscip Rev Syst Biol Med. 2014 Jan-Feb;6(1):13-36. doi: 10.1002/wsbm.1245. Epub 2013 Sep 30. Review.

10.

Programming biological models in Python using PySB.

Lopez CF, Muhlich JL, Bachman JA, Sorger PK.

Mol Syst Biol. 2013;9:646. doi: 10.1038/msb.2013.1.

11.

Osteoporosis in patients with subclinical hypothyroidism treated with thyroid hormone.

Tárraga López PJ, López CF, de Mora FN, Montes JA, Albero JS, Mañez AN, Casas AG.

Clin Cases Miner Bone Metab. 2011 Sep;8(3):44-8.

12.

Ultra-low-dose intra-arterial contrast injection for iliofemoral computed tomographic angiography.

Joshi SB, Mendoza DD, Steinberg DH, Goldstein MA, Lopez CF, Raizon A, Weissman G, Satler LF, Pichard AD, Weigold WG.

JACC Cardiovasc Imaging. 2009 Dec;2(12):1404-11. doi: 10.1016/j.jcmg.2009.08.010.

13.

Accuracy of computed tomographic angiography for stenosis quantification using quantitative coronary angiography or intravascular ultrasound as the gold standard.

Joshi SB, Okabe T, Roswell RO, Weissman G, Lopez CF, Lindsay J, Pichard AD, Weissman NJ, Waksman R, Weigold WG.

Am J Cardiol. 2009 Oct 15;104(8):1047-51. doi: 10.1016/j.amjcard.2009.05.052.

PMID:
19801022
14.

Probing Membrane Insertion Activity of Antimicrobial Polymers via Coarse-grain Molecular Dynamics.

Lopez CF, Nielsen SO, Srinivas G, Degrado WF, Klein ML.

J Chem Theory Comput. 2006 May;2(3):649-655.

15.

Hydrophobicity of protein surfaces: Separating geometry from chemistry.

Giovambattista N, Lopez CF, Rossky PJ, Debenedetti PG.

Proc Natl Acad Sci U S A. 2008 Feb 19;105(7):2274-9. doi: 10.1073/pnas.0708088105. Epub 2008 Feb 11.

16.

Mechanistic elements of protein cold denaturation.

Lopez CF, Darst RK, Rossky PJ.

J Phys Chem B. 2008 May 15;112(19):5961-7. doi: 10.1021/jp075928t. Epub 2008 Jan 9.

PMID:
18181599
17.

[Variability in primary care drug prescription in 2003 in Castile-la Mancha, Spain].

de López CF, Montero FM, Valles Fernández N, Fernández Rodríguez OX, Alejandre Lázaro G, Chacón Fuertes J.

Rev Esp Salud Publica. 2005 Sep-Oct;79(5):551-8. Spanish.

18.

Modeling surfactant adsorption on hydrophobic surfaces.

Nielsen SO, Srinivas G, Lopez CF, Klein ML.

Phys Rev Lett. 2005 Jun 10;94(22):228301. Epub 2005 Jun 8.

PMID:
16090439
19.

Structure and dynamics of model pore insertion into a membrane.

Lopez CF, Nielsen SO, Ensing B, Moore PB, Klein ML.

Biophys J. 2005 May;88(5):3083-94. Epub 2005 Feb 18.

20.

Transmembrane peptide-induced lipid sorting and mechanism of Lalpha-to-inverted phase transition using coarse-grain molecular dynamics.

Nielsen SO, Lopez CF, Ivanov I, Moore PB, Shelley JC, Klein ML.

Biophys J. 2004 Oct;87(4):2107-15.

21.

Understanding nature's design for a nanosyringe.

Lopez CF, Nielsen SO, Moore PB, Klein ML.

Proc Natl Acad Sci U S A. 2004 Mar 30;101(13):4431-4. Epub 2004 Mar 12.

23.
24.

Ameloblastic fibro-odontoma. Report of seven cases.

Miller AS, López CF, Pullon PA, Elzay RP.

Oral Surg Oral Med Oral Pathol. 1976 Mar;41(3):354-65. No abstract available.

PMID:
1061923
25.

[Clinical anatomy and histology of the oral cavity; aspects of educational methods employed for teaching in Guatemala].

Menendez OR, Lopez CF.

ALAFO. 1969 Jul;4(2):103-19. Spanish. No abstract available.

PMID:
5258230
26.

[Clinical microscopic study of the effects of a corticosteroid and antibiotic compound on human dental pulp].

Morales M, Kepfer GH, Lopez CF.

ALAFO. 1968 Jul;3(2):175-96. Spanish. No abstract available.

PMID:
5242064
27.

[Epstein pearls. Report on a case].

Rendon JE, Lopez CF, Menendez OR.

Rev Fed Odontol Colomb. 1968 Jan-Mar;17(84):47-50. Spanish. No abstract available.

PMID:
5244230

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