Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 76

1.

Genomic and metabolic differences between Pseudomonas putida populations inhabiting sugarcane rhizosphere or bulk soil.

Lopes LD, Weisberg AJ, Davis EW 2nd, Varize CS, Pereira E Silva MC, Chang JH, Loper JE, Andreote FD.

PLoS One. 2019 Oct 3;14(10):e0223269. doi: 10.1371/journal.pone.0223269. eCollection 2019.

2.

Discovery of the Cyclic Lipopeptide Gacamide A by Genome Mining and Repair of the Defective GacA Regulator in Pseudomonas fluorescens Pf0-1.

Jahanshah G, Yan Q, Gerhardt H, Pataj Z, Lämmerhofer M, Pianet I, Josten M, Sahl HG, Silby MW, Loper JE, Gross H.

J Nat Prod. 2019 Feb 22;82(2):301-308. doi: 10.1021/acs.jnatprod.8b00747. Epub 2019 Jan 22.

PMID:
30666877
3.

Genome variations between rhizosphere and bulk soil ecotypes of a Pseudomonas koreensis population.

Lopes LD, Pereira E Silva MC, Weisberg AJ, Davis EW 2nd, Yan Q, Varize CS, Wu CF, Chang JH, Loper JE, Andreote FD.

Environ Microbiol. 2018 Dec;20(12):4401-4414. doi: 10.1111/1462-2920.14363. Epub 2018 Sep 26.

PMID:
30033663
4.

Genome-based evolutionary history of Pseudomonas spp.

Hesse C, Schulz F, Bull CT, Shaffer BT, Yan Q, Shapiro N, Hassan KA, Varghese N, Elbourne LDH, Paulsen IT, Kyrpides N, Woyke T, Loper JE.

Environ Microbiol. 2018 Jun;20(6):2142-2159. doi: 10.1111/1462-2920.14130. Epub 2018 Jul 22.

PMID:
29633519
5.

Secondary Metabolism and Interspecific Competition Affect Accumulation of Spontaneous Mutants in the GacS-GacA Regulatory System in Pseudomonas protegens.

Yan Q, Lopes LD, Shaffer BT, Kidarsa TA, Vining O, Philmus B, Song C, Stockwell VO, Raaijmakers JM, McPhail KL, Andreote FD, Chang JH, Loper JE.

MBio. 2018 Jan 16;9(1). pii: e01845-17. doi: 10.1128/mBio.01845-17.

6.

Tropical soils are a reservoir for fluorescent Pseudomonas spp. biodiversity.

Lopes LD, Davis EW 2nd, Pereira E Silva MC, Weisberg AJ, Bresciani L, Chang JH, Loper JE, Andreote FD.

Environ Microbiol. 2018 Jan;20(1):62-74. doi: 10.1111/1462-2920.13957. Epub 2017 Nov 10.

PMID:
29027341
7.

Pseudomonas protegens Pf-5 favours self-produced siderophore over free-loading in interspecies competition for iron.

Sexton DJ, Glover RC, Loper JE, Schuster M.

Environ Microbiol. 2017 Sep;19(9):3514-3525. doi: 10.1111/1462-2920.13836. Epub 2017 Jul 17.

PMID:
28631403
8.

Novel mechanism of metabolic co-regulation coordinates the biosynthesis of secondary metabolites in Pseudomonas protegens.

Yan Q, Philmus B, Chang JH, Loper JE.

Elife. 2017 Mar 6;6. pii: e22835. doi: 10.7554/eLife.22835.

9.

Characterization of Toxin Complex Gene Clusters and Insect Toxicity of Bacteria Representing Four Subgroups of Pseudomonas fluorescens.

Rangel LI, Henkels MD, Shaffer BT, Walker FL, Davis EW 2nd, Stockwell VO, Bruck D, Taylor BJ, Loper JE.

PLoS One. 2016 Aug 31;11(8):e0161120. doi: 10.1371/journal.pone.0161120. eCollection 2016.

10.

Disruption of Transporters Affiliated with Enantio-Pyochelin Biosynthesis Gene Cluster of Pseudomonas protegens Pf-5 Has Pleiotropic Effects.

Lim CK, Penesyan A, Hassan KA, Loper JE, Paulsen IT.

PLoS One. 2016 Jul 21;11(7):e0159884. doi: 10.1371/journal.pone.0159884. eCollection 2016.

11.

The Rare Codon AGA Is Involved in Regulation of Pyoluteorin Biosynthesis in Pseudomonas protegens Pf-5.

Yan Q, Philmus B, Hesse C, Kohen M, Chang JH, Loper JE.

Front Microbiol. 2016 Apr 19;7:497. doi: 10.3389/fmicb.2016.00497. eCollection 2016.

12.

Rhizoxin analogs, orfamide A and chitinase production contribute to the toxicity of Pseudomonas protegens strain Pf-5 to Drosophila melanogaster.

Loper JE, Henkels MD, Rangel LI, Olcott MH, Walker FL, Bond KL, Kidarsa TA, Hesse CN, Sneh B, Stockwell VO, Taylor BJ.

Environ Microbiol. 2016 Oct;18(10):3509-3521. doi: 10.1111/1462-2920.13369. Epub 2016 Jun 15.

PMID:
27130686
13.

Genome Sequencing and Transposon Mutagenesis of Burkholderia seminalis TC3.4.2R3 Identify Genes Contributing to Suppression of Orchid Necrosis Caused by B. gladioli.

Araújo WL, Creason AL, Mano ET, Camargo-Neves AA, Minami SN, Chang JH, Loper JE.

Mol Plant Microbe Interact. 2016 Jun;29(6):435-46. doi: 10.1094/MPMI-02-16-0047-R. Epub 2016 Apr 18.

14.

Living on the edge: emergence of spontaneous gac mutations in Pseudomonas protegens during swarming motility.

Song C, Kidarsa TA, van de Mortel JE, Loper JE, Raaijmakers JM.

Environ Microbiol. 2016 Oct;18(10):3453-3465. doi: 10.1111/1462-2920.13288. Epub 2016 Apr 28.

PMID:
26945503
15.

An Interspecies Signaling System Mediated by Fusaric Acid Has Parallel Effects on Antifungal Metabolite Production by Pseudomonas protegens Strain Pf-5 and Antibiosis of Fusarium spp.

Quecine MC, Kidarsa TA, Goebel NC, Shaffer BT, Henkels MD, Zabriskie TM, Loper JE.

Appl Environ Microbiol. 2015 Dec 11;82(5):1372-1382. doi: 10.1128/AEM.02574-15.

16.

Phloroglucinol functions as an intracellular and intercellular chemical messenger influencing gene expression in Pseudomonas protegens.

Clifford JC, Buchanan A, Vining O, Kidarsa TA, Chang JH, McPhail KL, Loper JE.

Environ Microbiol. 2016 Oct;18(10):3296-3308. doi: 10.1111/1462-2920.13043. Epub 2015 Oct 14.

PMID:
26337778
17.

Investigations into the Biosynthesis, Regulation, and Self-Resistance of Toxoflavin in Pseudomonas protegens Pf-5.

Philmus B, Shaffer BT, Kidarsa TA, Yan Q, Raaijmakers JM, Begley TP, Loper JE.

Chembiochem. 2015 Aug 17;16(12):1782-90. doi: 10.1002/cbic.201500247. Epub 2015 Jul 3.

PMID:
26077901
18.

The Rsm regulon of plant growth-promoting Pseudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis.

Song C, van der Voort M, van de Mortel J, Hassan KA, Elbourne LD, Paulsen IT, Loper JE, Raaijmakers JM.

Microb Biotechnol. 2015 Mar;8(2):296-310. doi: 10.1111/1751-7915.12190. Epub 2014 Dec 9.

19.

Analysis of genome sequences from plant pathogenic Rhodococcus reveals genetic novelties in virulence loci.

Creason AL, Vandeputte OM, Savory EA, Davis EW 2nd, Putnam ML, Hu E, Swader-Hines D, Mol A, Baucher M, Prinsen E, Zdanowska M, Givan SA, El Jaziri M, Loper JE, Mahmud T, Chang JH.

PLoS One. 2014 Jul 10;9(7):e101996. doi: 10.1371/journal.pone.0101996. eCollection 2014.

20.

Pseudomonas protegens Pf-5 causes discoloration and pitting of mushroom caps due to the production of antifungal metabolites.

Henkels MD, Kidarsa TA, Shaffer BT, Goebel NC, Burlinson P, Mavrodi DV, Bentley MA, Rangel LI, Davis EW 2nd, Thomashow LS, Zabriskie TM, Preston GM, Loper JE.

Mol Plant Microbe Interact. 2014 Jul;27(7):733-46. doi: 10.1094/MPMI-10-13-0311-R.

21.

The Gac regulon of Pseudomonas fluorescens SBW25.

Cheng X, de Bruijn I, van der Voort M, Loper JE, Raaijmakers JM.

Environ Microbiol Rep. 2013 Aug;5(4):608-19. doi: 10.1111/1758-2229.12061. Epub 2013 Apr 30.

PMID:
23864577
22.

pA506, a conjugative plasmid of the plant epiphyte Pseudomonas fluorescens A506.

Stockwell VO, Davis EW 2nd, Carey A, Shaffer BT, Mavrodi DV, Hassan KA, Hockett K, Thomashow LS, Paulsen IT, Loper JE.

Appl Environ Microbiol. 2013 Sep;79(17):5272-82. doi: 10.1128/AEM.01354-13. Epub 2013 Jun 28.

23.

Effect of tannic acid on the transcriptome of the soil bacterium Pseudomonas protegens Pf-5.

Lim CK, Penesyan A, Hassan KA, Loper JE, Paulsen IT.

Appl Environ Microbiol. 2013 May;79(9):3141-5. doi: 10.1128/AEM.03101-12. Epub 2013 Feb 22.

24.

Genes expressed by the biological control bacterium Pseudomonas protegens Pf-5 on seed surfaces under the control of the global regulators GacA and RpoS.

Kidarsa TA, Shaffer BT, Goebel NC, Roberts DP, Buyer JS, Johnson A, Kobayashi DY, Zabriskie TM, Paulsen I, Loper JE.

Environ Microbiol. 2013 Mar;15(3):716-35. doi: 10.1111/1462-2920.12066. Epub 2013 Jan 8.

PMID:
23297839
25.

Ferric-pyoverdine recognition by Fpv outer membrane proteins of Pseudomonas protegens Pf-5.

Hartney SL, Mazurier S, Girard MK, Mehnaz S, Davis EW 2nd, Gross H, Lemanceau P, Loper JE.

J Bacteriol. 2013 Feb;195(4):765-76. doi: 10.1128/JB.01639-12. Epub 2012 Dec 7.

26.

The effect of zinc limitation on the transcriptome of Pseudomonas protegens Pf-5.

Lim CK, Hassan KA, Penesyan A, Loper JE, Paulsen IT.

Environ Microbiol. 2013 Mar;15(3):702-15. doi: 10.1111/j.1462-2920.2012.02849.x. Epub 2012 Aug 19.

PMID:
22900619
27.

Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions.

Loper JE, Hassan KA, Mavrodi DV, Davis EW 2nd, Lim CK, Shaffer BT, Elbourne LD, Stockwell VO, Hartney SL, Breakwell K, Henkels MD, Tetu SG, Rangel LI, Kidarsa TA, Wilson NL, van de Mortel JE, Song C, Blumhagen R, Radune D, Hostetler JB, Brinkac LM, Durkin AS, Kluepfel DA, Wechter WP, Anderson AJ, Kim YC, Pierson LS 3rd, Pierson EA, Lindow SE, Kobayashi DY, Raaijmakers JM, Weller DM, Thomashow LS, Allen AE, Paulsen IT.

PLoS Genet. 2012 Jul;8(7):e1002784. doi: 10.1371/journal.pgen.1002784. Epub 2012 Jul 5.

28.

The effect of iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5.

Lim CK, Hassan KA, Tetu SG, Loper JE, Paulsen IT.

PLoS One. 2012;7(6):e39139. doi: 10.1371/journal.pone.0039139. Epub 2012 Jun 18.

29.

Phloroglucinol mediates cross-talk between the pyoluteorin and 2,4-diacetylphloroglucinol biosynthetic pathways in Pseudomonas fluorescens Pf-5.

Kidarsa TA, Goebel NC, Zabriskie TM, Loper JE.

Mol Microbiol. 2011 Jul;81(2):395-414. doi: 10.1111/j.1365-2958.2011.07697.x. Epub 2011 May 26.

30.

Bacterial subfamily of LuxR regulators that respond to plant compounds.

Subramoni S, Gonzalez JF, Johnson A, Péchy-Tarr M, Rochat L, Paulsen I, Loper JE, Keel C, Venturi V.

Appl Environ Microbiol. 2011 Jul;77(13):4579-88. doi: 10.1128/AEM.00183-11. Epub 2011 Apr 29.

31.

TonB-dependent outer-membrane proteins and siderophore utilization in Pseudomonas fluorescens Pf-5.

Hartney SL, Mazurier S, Kidarsa TA, Quecine MC, Lemanceau P, Loper JE.

Biometals. 2011 Apr;24(2):193-213. doi: 10.1007/s10534-010-9385-2. Epub 2010 Nov 16.

PMID:
21080032
32.

Structural and functional analysis of the type III secretion system from Pseudomonas fluorescens Q8r1-96.

Mavrodi DV, Joe A, Mavrodi OV, Hassan KA, Weller DM, Paulsen IT, Loper JE, Alfano JR, Thomashow LS.

J Bacteriol. 2011 Jan;193(1):177-89. doi: 10.1128/JB.00895-10. Epub 2010 Oct 22.

33.

Lethality and developmental delay in Drosophila melanogaster larvae after ingestion of selected Pseudomonas fluorescens strains.

Olcott MH, Henkels MD, Rosen KL, Walker FL, Sneh B, Loper JE, Taylor BJ.

PLoS One. 2010 Sep 13;5(9):e12504. doi: 10.1371/journal.pone.0012504.

34.

Control of fire blight by Pseudomonas fluorescens A506 and Pantoea vagans C9-1 applied as single strains and mixed inocula.

Stockwell VO, Johnson KB, Sugar D, Loper JE.

Phytopathology. 2010 Dec;100(12):1330-9. doi: 10.1094/PHYTO-03-10-0097.

35.

Mechanistically compatible mixtures of bacterial antagonists improve biological control of fire blight of pear.

Stockwell VO, Johnson KB, Sugar D, Loper JE.

Phytopathology. 2011 Jan;101(1):113-23. doi: 10.1094/PHYTO-03-10-0098. Erratum in: Phytopathology. 2011 Feb;101(2):299.

36.

Inactivation of the GacA response regulator in Pseudomonas fluorescens Pf-5 has far-reaching transcriptomic consequences.

Hassan KA, Johnson A, Shaffer BT, Ren Q, Kidarsa TA, Elbourne LD, Hartney S, Duboy R, Goebel NC, Zabriskie TM, Paulsen IT, Loper JE.

Environ Microbiol. 2010 Apr;12(4):899-915. doi: 10.1111/j.1462-2920.2009.02134.x. Epub 2010 Jan 18.

PMID:
20089046
37.

Genomics of secondary metabolite production by Pseudomonas spp.

Gross H, Loper JE.

Nat Prod Rep. 2009 Nov;26(11):1408-46. doi: 10.1039/b817075b. Epub 2009 Oct 1. Review. No abstract available.

PMID:
19844639
38.

Role of RpoS in stress tolerance and environmental fitness of the phyllosphere bacterium Pseudomonas fluorescens strain 122.

Stockwell VO, Hockett K, Loper JE.

Phytopathology. 2009 Jun;99(6):689-95. doi: 10.1094/PHYTO-99-6-0689.

39.

Stress tolerance and environmental fitness of Pseudomonas fluorescens A506, which has a mutation in RpoS.

Hagen MJ, Stockwell VO, Whistler CA, Johnson KB, Loper JE.

Phytopathology. 2009 Jun;99(6):679-88. doi: 10.1094/PHYTO-99-6-0679.

40.

Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5.

Mavrodi DV, Loper JE, Paulsen IT, Thomashow LS.

BMC Microbiol. 2009 Jan 13;9:8. doi: 10.1186/1471-2180-9-8.

41.

Role of rpfF in virulence and exoenzyme production of Xanthomonas axonopodis pv. glycines, the causal agent of bacterial pustule of soybean.

Thowthampitak J, Shaffer BT, Prathuangwong S, Loper JE.

Phytopathology. 2008 Dec;98(12):1252-60. doi: 10.1094/PHYTO-98-12-1252. Erratum in: Phytopathology. 2009 Jan;99(1):122.

42.

Establishment of Bacterial Antagonists of Erwinia amylovora on Pear and Apple Blossoms as Influenced by Inoculum Preparation.

Stockwell VO, Johnson KB, Loper JE.

Phytopathology. 1998 Jun;88(6):506-13. doi: 10.1094/PHYTO.1998.88.6.506.

43.

Microbial Antagonism at the Root Level Is Involved in the Suppression of Fusarium Wilt by the Combination of Nonpathogenic Fusarium oxysporum Fo47 and Pseudomonas putida WCS358.

Duijff BJ, Recorbet G, Bakker PA, Loper JE, Lemanceau P.

Phytopathology. 1999 Nov;89(11):1073-9. doi: 10.1094/PHYTO.1999.89.11.1073.

44.

Epiphytic colonization of pear stigmas and hypanthia by bacteria during primary bloom.

Stockwell VO, McLaughlin RJ, Henkels MD, Loper JE, Sugar D, Roberts RG.

Phytopathology. 1999 Dec;89(12):1162-8. doi: 10.1094/PHYTO.1999.89.12.1162.

45.

An Extracellular Protease of Pseudomonas fluorescens Inactivates Antibiotics of Pantoea agglomerans.

Anderson LM, Stockwell VO, Loper JE.

Phytopathology. 2004 Nov;94(11):1228-34. doi: 10.1094/PHYTO.2004.94.11.1228.

46.

The Genomic Sequence of Pseudomonas fluorescens Pf-5: Insights Into Biological Control.

Loper JE, Kobayashi DY, Paulsen IT.

Phytopathology. 2007 Feb;97(2):233-8. doi: 10.1094/PHYTO-97-2-0233.

47.

Antibiosis Contributes to Biological Control of Fire Blight by Pantoea agglomerans Strain Eh252 in Orchards.

Stockwell VO, Johnson KB, Sugar D, Loper JE.

Phytopathology. 2002 Nov;92(11):1202-9. doi: 10.1094/PHYTO.2002.92.11.1202.

48.

Role of iron in rhizobacteria-mediated induced systemic resistance of cucumber.

Press CM, Loper JE, Kloepper JW.

Phytopathology. 2001 Jun;91(6):593-8. doi: 10.1094/PHYTO.2001.91.6.593.

49.

Bioavailability of Iron to Pseudomonas fluorescens Strain A506 on Flowers of Pear and Apple.

Temple TN, Stockwell VO, Loper JE, Johnson KB.

Phytopathology. 2004 Dec;94(12):1286-94. doi: 10.1094/PHYTO.2004.94.12.1286.

50.

Molecular analysis of a novel gene cluster encoding an insect toxin in plant-associated strains of Pseudomonas fluorescens.

Péchy-Tarr M, Bruck DJ, Maurhofer M, Fischer E, Vogne C, Henkels MD, Donahue KM, Grunder J, Loper JE, Keel C.

Environ Microbiol. 2008 Sep;10(9):2368-86. doi: 10.1111/j.1462-2920.2008.01662.x. Epub 2008 May 14.

PMID:
18484997

Supplemental Content

Loading ...
Support Center