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Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species.

Muñoz JF, Gade L, Chow NA, Loparev VN, Juieng P, Berkow EL, Farrer RA, Litvintseva AP, Cuomo CA.

Nat Commun. 2018 Dec 17;9(1):5346. doi: 10.1038/s41467-018-07779-6.


PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli, and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene.

Lindsey RL, Batra D, Smith P, Patel PN, Tagg KA, Garcia-Toledo L, Loparev VN, Juieng P, Sheth M, Joung YJ, Rowe LA.

Microbiol Resour Announc. 2018;7(14). pii: e01025-18. doi: 10.1128/MRA.01025-18. Epub 2018 Oct 11.


High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing.

Patel PN, Lindsey RL, Garcia-Toledo L, Rowe LA, Batra D, Whitley SW, Drapeau D, Stoneburg D, Martin H, Juieng P, Loparev VN, Strockbine N.

Genome Announc. 2018 May 10;6(19). pii: e00391-18. doi: 10.1128/genomeA.00391-18.


High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing.

Kim J, Lindsey RL, Garcia-Toledo L, Loparev VN, Rowe LA, Batra D, Juieng P, Stoneburg D, Martin H, Knipe K, Smith P, Strockbine N.

Genome Announc. 2018 Apr 12;6(15). pii: e00282-18. doi: 10.1128/genomeA.00282-18.


Genome Sequence of a Multidrug-Resistant Candida haemulonii Isolate from a Patient with Chronic Leg Ulcers in Israel.

Chow NA, Gade L, Batra D, Rowe LA, Juieng P, Ben-Ami R, Loparev VN, Litvintseva AP.

Genome Announc. 2018 Apr 12;6(15). pii: e00176-18. doi: 10.1128/genomeA.00176-18.


Genome Sequence of the Amphotericin B-Resistant Candida duobushaemulonii Strain B09383.

Chow NA, Gade L, Batra D, Rowe LA, Juieng P, Loparev VN, Litvintseva AP.

Genome Announc. 2018 Mar 29;6(13). pii: e00204-18. doi: 10.1128/genomeA.00204-18.


Screening and Genomic Characterization of Filamentous Hemagglutinin-Deficient Bordetella pertussis.

Weigand MR, Pawloski LC, Peng Y, Ju H, Burroughs M, Cassiday PK, Davis JK, DuVall M, Johnson T, Juieng P, Knipe K, Loparev VN, Mathis MH, Rowe LA, Sheth M, Williams MM, Tondella ML.

Infect Immun. 2018 Mar 22;86(4). pii: e00869-17. doi: 10.1128/IAI.00869-17. Print 2018 Apr.


High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping.

Schroeder MR, Juieng P, Batra D, Knipe K, Rowe LA, Sheth M, Smith P, Garcia-Toledo L, Loparev VN, Lindsey RL.

Genome Announc. 2018 Jan 4;6(1). pii: e01384-17. doi: 10.1128/genomeA.01384-17.


Complete Circularized Genome Sequences of Four Strains of Elizabethkingia anophelis, Including Two Novel Strains Isolated from Wild-Caught Anopheles sinensis.

Pei D, Nicholson AC, Jiang J, Chen H, Whitney AM, Villarma A, Bell M, Humrighouse B, Rowe LA, Sheth M, Batra D, Juieng P, Loparev VN, McQuiston JR, Lan Y, Ma Y, Xu J.

Genome Announc. 2017 Nov 22;5(47). pii: e01359-17. doi: 10.1128/genomeA.01359-17.


Twelve Complete Reference Genomes of Clinical Isolates in the Capnocytophaga Genus.

Villarma A, Gulvik CA, Rowe LA, Sheth M, Juieng P, Nicholson AC, Loparev VN, McQuiston JR.

Genome Announc. 2017 Nov 2;5(44). pii: e01186-17. doi: 10.1128/genomeA.01186-17.


Complete Genome Sequences of Bordetella pertussis Isolates with Novel Pertactin-Deficient Deletions.

Weigand MR, Peng Y, Cassiday PK, Loparev VN, Johnson T, Juieng P, Nazarian EJ, Weening K, Tondella ML, Williams MM.

Genome Announc. 2017 Sep 14;5(37). pii: e00973-17. doi: 10.1128/genomeA.00973-17.


Enterococcus crotali sp. nov., isolated from faecal material of a timber rattlesnake.

McLaughlin RW, Shewmaker PL, Whitney AM, Humrighouse BW, Lauer AC, Loparev VN, Gulvik CA, Cochran PA, Dowd SE.

Int J Syst Evol Microbiol. 2017 Jun;67(6):1984-1989. doi: 10.1099/ijsem.0.001900. Epub 2017 Jun 20.


High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States.

Lindsey RL, Batra D, Rowe L, Loparev VN, Stripling D, Garcia-Toledo L, Knipe K, Juieng P, Sheth M, Martin H, Laufer Halpin A.

Genome Announc. 2017 Mar 16;5(11). pii: e01725-16. doi: 10.1128/genomeA.01725-16.


Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67).

Bugrysheva JV, Cherney B, Sue D, Conley AB, Rowe LA, Knipe KM, Frace MA, Loparev VN, Avila JR, Anderson K, Hodge DR, Pillai SP, Weigel LM.

Genome Announc. 2016 Nov 17;4(6). pii: e01294-16. doi: 10.1128/genomeA.01294-16.


Complete Genome Sequences of Four Strains from the 2015-2016 Elizabethkingia anophelis Outbreak.

Nicholson AC, Whitney AM, Emery BD, Bell ME, Gartin JT, Humrighouse BW, Loparev VN, Batra D, Sheth M, Rowe LA, Juieng P, Knipe K, Gulvik C, McQuiston JR.

Genome Announc. 2016 Jun 16;4(3). pii: e00563-16. doi: 10.1128/genomeA.00563-16.


Three Genome Sequences of Legionella pneumophila subsp. pascullei Associated with Colonization of a Health Care Facility.

Kozak-Muiznieks NA, Morrison SS, Sammons S, Rowe LA, Sheth M, Frace M, Lucas CE, Loparev VN, Raphael BH, Winchell JM.

Genome Announc. 2016 May 5;4(3). pii: e00335-16. doi: 10.1128/genomeA.00335-16.


Molecular detection of airborne Coccidioides in Tucson, Arizona.

Chow NA, Griffin DW, Barker BM, Loparev VN, Litvintseva AP.

Med Mycol. 2016 Aug 1;54(6):584-92. doi: 10.1093/mmy/myw022. Epub 2016 May 3.


Finished Annotated Genome Sequence of Burkholderia pseudomallei Strain Bp1651, a Multidrug-Resistant Clinical Isolate.

Bugrysheva JV, Sue D, Hakovirta J, Loparev VN, Knipe K, Sammons SA, Ranganathan-Ganakammal S, Changayil S, Srinivasamoorthy G, Weil MR, Tatusov RL, Gee JE, Elrod MG, Hoffmaster AR, Weigel LM.

Genome Announc. 2015 Dec 3;3(6). pii: e01427-15. doi: 10.1128/genomeA.01427-15.


Genome Sequence of a Urease-Positive Campylobacter lari Strain.

Meinersmann RJ, Bono JL, Lindsey RL, Genzlinger LL, Loparev VN, Oakley BB.

Genome Announc. 2015 Oct 15;3(5). pii: e01191-15. doi: 10.1128/genomeA.01191-15.


Draft genome sequences of Bordetella holmesii strains from blood (F627) and nasopharynx (H558).

Tatti KM, Loparev VN, Ranganathanganakammal S, Changayil S, Frace M, Weil MR, Sammons S, Maccannell D, Mayer LW, Tondella ML.

Genome Announc. 2013 Mar 21;1(2):e0005613. doi: 10.1128/genomeA.00056-13.


[Genotyping of varicella zoster virus strains isolated in Mongolia].

Enskhsaĭkhan D, Loparev VN, Bostik V, Tuul P, Darmaa B, Demkin VV, Niamdavaa P.

Vopr Virusol. 2010 Sep-Oct;55(5):40-3. Russian.


Distribution of varicella-zoster virus (VZV) wild-type genotypes in northern and southern Europe: evidence for high conservation of circulating genotypes.

Loparev VN, Rubtcova EN, Bostik V, Tzaneva V, Sauerbrei A, Robo A, Sattler-Dornbacher E, Hanovcova I, Stepanova V, Splino M, Eremin V, Koskiniemi M, Vankova OE, Schmid DS.

Virology. 2009 Jan 20;383(2):216-25. doi: 10.1016/j.virol.2008.10.026. Epub 2008 Nov 20.


Laboratory diagnosis and characteristics of breakthrough varicella in children.

Weinmann S, Chun C, Mullooly JP, Riedlinger K, Houston H, Loparev VN, Schmid DS, Seward JF.

J Infect Dis. 2008 Mar 1;197 Suppl 2:S132-8. doi: 10.1086/522148.


Transmission of a newly characterized strain of varicella-zoster virus from a patient with herpes zoster in a long-term-care facility, West Virginia, 2004.

Lopez AS, Burnett-Hartman A, Nambiar R, Ritz L, Owens P, Loparev VN, Guris D, Schmid DS.

J Infect Dis. 2008 Mar 1;197(5):646-53. doi: 10.1086/527419.


Identification of five major and two minor genotypes of varicella-zoster virus strains: a practical two-amplicon approach used to genotype clinical isolates in Australia and New Zealand.

Loparev VN, Rubtcova EN, Bostik V, Govil D, Birch CJ, Druce JD, Schmid DS, Croxson MC.

J Virol. 2007 Dec;81(23):12758-65. Epub 2007 Sep 26.


Genotypic analysis of varicella-zoster virus and its seroprevalence in Finland.

Koskiniemi M, Lappalainen M, Schmid DS, Rubtcova E, Loparev VN.

Clin Vaccine Immunol. 2007 Sep;14(9):1057-61. Epub 2007 Jul 11.


DNA sequence variability in isolates recovered from patients with postvaccination rash or herpes zoster caused by Oka varicella vaccine.

Loparev VN, Rubtcova E, Seward JF, Levin MJ, Schmid DS.

J Infect Dis. 2007 Feb 15;195(4):502-10. Epub 2007 Jan 10.


Complete-genome phylogenetic approach to varicella-zoster virus evolution: genetic divergence and evidence for recombination.

Norberg P, Liljeqvist JA, Bergström T, Sammons S, Schmid DS, Loparev VN.

J Virol. 2006 Oct;80(19):9569-76.


One dose of varicella vaccine does not prevent school outbreaks: is it time for a second dose?

Lopez AS, Guris D, Zimmerman L, Gladden L, Moore T, Haselow DT, Loparev VN, Schmid DS, Jumaan AO, Snow SL.

Pediatrics. 2006 Jun;117(6):e1070-7.


New mosaic subgenotype of varicella-zoster virus in the USA: VZV detection and genotyping by oligonucleotide-microarray.

Sergeev N, Rubtcova E, Chizikov V, Schmid DS, Loparev VN.

J Virol Methods. 2006 Sep;136(1-2):8-16. Epub 2006 May 3.


Genetic profile of an Oka varicella vaccine virus variant isolated from an infant with zoster.

Sauerbrei A, Rubtcova E, Wutzler P, Schmid DS, Loparev VN.

J Clin Microbiol. 2004 Dec;42(12):5604-8.


Human monkeypox infection: a family cluster in the midwestern United States.

Sejvar JJ, Chowdary Y, Schomogyi M, Stevens J, Patel J, Karem K, Fischer M, Kuehnert MJ, Zaki SR, Paddock CD, Guarner J, Shieh WJ, Patton JL, Bernard N, Li Y, Olson VA, Kline RL, Loparev VN, Schmid DS, Beard B, Regnery RR, Damon IK.

J Infect Dis. 2004 Nov 15;190(10):1833-40. Epub 2004 Oct 12.


Global identification of three major genotypes of varicella-zoster virus: longitudinal clustering and strategies for genotyping.

Loparev VN, Gonzalez A, Deleon-Carnes M, Tipples G, Fickenscher H, Torfason EG, Schmid DS.

J Virol. 2004 Aug;78(15):8349-58.


Postpartum varicella vaccination: is the vaccine virus excreted in breast milk?

Bohlke K, Galil K, Jackson LA, Schmid DS, Starkovich P, Loparev VN, Seward JF.

Obstet Gynecol. 2003 Nov;102(5 Pt 1):970-7.


Genomic analysis of varicella-zoster virus: primers for individual open reading frames.

Wagenaar TR, Grose C, Loparev VN, Schmid DS, Breuer J.

J Clin Virol. 2003 Sep;28(1):104-10.


Outbreak of human monkeypox, Democratic Republic of Congo, 1996 to 1997.

Hutin YJ, Williams RJ, Malfait P, Pebody R, Loparev VN, Ropp SL, Rodriguez M, Knight JC, Tshioko FK, Khan AS, Szczeniowski MV, Esposito JJ.

Emerg Infect Dis. 2001 May-Jun;7(3):434-8.


Rapid genotyping of varicella-zoster virus vaccine and wild-type strains with fluorophore-labeled hybridization probes.

Loparev VN, McCaustland K, Holloway BP, Krause PR, Takayama M, Schmid DS.

J Clin Microbiol. 2000 Dec;38(12):4315-9.


Alastrim smallpox variola minor virus genome DNA sequences.

Shchelkunov SN, Totmenin AV, Loparev VN, Safronov PF, Gutorov VV, Chizhikov VE, Knight JC, Parsons JM, Massung RF, Esposito JJ.

Virology. 2000 Jan 20;266(2):361-86.


A third distinct tumor necrosis factor receptor of orthopoxviruses.

Loparev VN, Parsons JM, Knight JC, Panus JF, Ray CA, Buller RM, Pickup DJ, Esposito JJ.

Proc Natl Acad Sci U S A. 1998 Mar 31;95(7):3786-91.


Terminal region sequence variations in variola virus DNA.

Massung RF, Loparev VN, Knight JC, Totmenin AV, Chizhikov VE, Parsons JM, Safronov PF, Gutorov VV, Shchelkunov SN, Esposito JJ.

Virology. 1996 Jul 15;221(2):291-300.


Potential virulence determinants in terminal regions of variola smallpox virus genome.

Massung RF, Esposito JJ, Liu LI, Qi J, Utterback TR, Knight JC, Aubin L, Yuran TE, Parsons JM, Loparev VN, et al.

Nature. 1993 Dec 23-30;366(6457):748-51.


[The importance of the blood transfusion factor in the epidemic process in hepatitis C in the patients of chronic hemodialysis units studied using a computer simulation model].

Savin EA, Kuzin SN, Blinov VM, Loparev VN, Sukhanova LL, Gol'tsov VA, Ershova GN, Viazov SO, Shakhgil'dian IV.

Vopr Virusol. 1993 May-Jun;38(3):135-7. Russian.


[Insertion mutants of the vaccinia virus. The effect of inactivating E7R and D8L genes on the biological properties of the virus].

Chernos VI, Vovk TS, Ivanova ON, Antonova TP, Loparev VN.

Mol Gen Mikrobiol Virusol. 1993 Mar-Apr;(2):30-4. Russian.


An efficient and simple method of DNA extraction from whole blood and cell lines to identify infectious agents.

Loparev VN, Cartas MA, Monken CE, Velpandi A, Srinivasan A.

J Virol Methods. 1991 Sep;34(1):105-12.


[Synthesis of the E-antigen of the hepatitis B virus (HBeAg) in eukaryotic cells by a recombinant strain of the vaccinia virus].

Loparev VN, Araslanov RR, Mitina IV, Chernos VI.

Mol Gen Mikrobiol Virusol. 1991 Sep;(9):3-6. Russian.


[Synthesis of hepatitis B virus core antigen (HBcAg) particles by recombinant vaccinia virus].

Loparev VN, Araslanov RR, Mitina IV, Antonova TP, Ianova NN, Iashina TL, Chernos VI.

Mol Gen Mikrobiol Virusol. 1990 Oct;(10):18-22. Russian. No abstract available.


Smallpox diagnosed 400 years later: results of skin lesions examination of 16th century Italian mummy.

Marennikova SS, Shelukhina EM, Zhukova OA, Yanova NN, Loparev VN.

J Hyg Epidemiol Microbiol Immunol. 1990;34(2):227-31.


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