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Items: 1 to 50 of 87

1.

First Draft Genome Sequence of Leishmania (Viannia) lainsoni Strain 216-34, Isolated from a Peruvian Clinical Case.

Lin W, Batra D, Narayanan V, Rowe LA, Sheth M, Zheng Y, Juieng P, Loparev V, de Almeida M.

Microbiol Resour Announc. 2019 Feb 7;8(6). pii: e01524-18. doi: 10.1128/MRA.01524-18. eCollection 2019 Feb.

2.

Draft Genome Sequence of French Guiana Leishmania (Viannia) guyanensis Strain 204-365, Assembled Using Long Reads.

Batra D, Lin W, Rowe LA, Sheth M, Zheng Y, Loparev V, de Almeida M.

Microbiol Resour Announc. 2018 Dec 13;7(23). pii: e01421-18. doi: 10.1128/MRA.01421-18. eCollection 2018 Dec.

3.

Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species.

Muñoz JF, Gade L, Chow NA, Loparev VN, Juieng P, Berkow EL, Farrer RA, Litvintseva AP, Cuomo CA.

Nat Commun. 2018 Dec 17;9(1):5346. doi: 10.1038/s41467-018-07779-6.

4.

PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli, and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene.

Lindsey RL, Batra D, Smith P, Patel PN, Tagg KA, Garcia-Toledo L, Loparev VN, Juieng P, Sheth M, Joung YJ, Rowe LA.

Microbiol Resour Announc. 2018;7(14). pii: e01025-18. doi: 10.1128/MRA.01025-18. Epub 2018 Oct 11.

5.

High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing.

Patel PN, Lindsey RL, Garcia-Toledo L, Rowe LA, Batra D, Whitley SW, Drapeau D, Stoneburg D, Martin H, Juieng P, Loparev VN, Strockbine N.

Genome Announc. 2018 May 10;6(19). pii: e00391-18. doi: 10.1128/genomeA.00391-18.

6.

High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing.

Kim J, Lindsey RL, Garcia-Toledo L, Loparev VN, Rowe LA, Batra D, Juieng P, Stoneburg D, Martin H, Knipe K, Smith P, Strockbine N.

Genome Announc. 2018 Apr 12;6(15). pii: e00282-18. doi: 10.1128/genomeA.00282-18.

7.

Genome Sequence of a Multidrug-Resistant Candida haemulonii Isolate from a Patient with Chronic Leg Ulcers in Israel.

Chow NA, Gade L, Batra D, Rowe LA, Juieng P, Ben-Ami R, Loparev VN, Litvintseva AP.

Genome Announc. 2018 Apr 12;6(15). pii: e00176-18. doi: 10.1128/genomeA.00176-18.

8.

Genome Sequence of the Amphotericin B-Resistant Candida duobushaemulonii Strain B09383.

Chow NA, Gade L, Batra D, Rowe LA, Juieng P, Loparev VN, Litvintseva AP.

Genome Announc. 2018 Mar 29;6(13). pii: e00204-18. doi: 10.1128/genomeA.00204-18.

9.

Screening and Genomic Characterization of Filamentous Hemagglutinin-Deficient Bordetella pertussis.

Weigand MR, Pawloski LC, Peng Y, Ju H, Burroughs M, Cassiday PK, Davis JK, DuVall M, Johnson T, Juieng P, Knipe K, Loparev VN, Mathis MH, Rowe LA, Sheth M, Williams MM, Tondella ML.

Infect Immun. 2018 Mar 22;86(4). pii: e00869-17. doi: 10.1128/IAI.00869-17. Print 2018 Apr.

10.

High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping.

Schroeder MR, Juieng P, Batra D, Knipe K, Rowe LA, Sheth M, Smith P, Garcia-Toledo L, Loparev VN, Lindsey RL.

Genome Announc. 2018 Jan 4;6(1). pii: e01384-17. doi: 10.1128/genomeA.01384-17.

11.

Standardization and validation of real time PCR assays for the diagnosis of histoplasmosis using three molecular targets in an animal model.

López LF, Muñoz CO, Cáceres DH, Tobón ÁM, Loparev V, Clay O, Chiller T, Litvintseva A, Gade L, González Á, Gómez BL.

PLoS One. 2017 Dec 29;12(12):e0190311. doi: 10.1371/journal.pone.0190311. eCollection 2017.

12.

Complete Circularized Genome Sequences of Four Strains of Elizabethkingia anophelis, Including Two Novel Strains Isolated from Wild-Caught Anopheles sinensis.

Pei D, Nicholson AC, Jiang J, Chen H, Whitney AM, Villarma A, Bell M, Humrighouse B, Rowe LA, Sheth M, Batra D, Juieng P, Loparev VN, McQuiston JR, Lan Y, Ma Y, Xu J.

Genome Announc. 2017 Nov 22;5(47). pii: e01359-17. doi: 10.1128/genomeA.01359-17.

13.

Twelve Complete Reference Genomes of Clinical Isolates in the Capnocytophaga Genus.

Villarma A, Gulvik CA, Rowe LA, Sheth M, Juieng P, Nicholson AC, Loparev VN, McQuiston JR.

Genome Announc. 2017 Nov 2;5(44). pii: e01186-17. doi: 10.1128/genomeA.01186-17.

14.

Complete Genome Sequences of Bordetella pertussis Isolates with Novel Pertactin-Deficient Deletions.

Weigand MR, Peng Y, Cassiday PK, Loparev VN, Johnson T, Juieng P, Nazarian EJ, Weening K, Tondella ML, Williams MM.

Genome Announc. 2017 Sep 14;5(37). pii: e00973-17. doi: 10.1128/genomeA.00973-17.

15.

Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.

Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Graziano J, Emery B, Bell M, Loparev V, Juieng P, Gartin J, Bizet C, Clermont D, Criscuolo A, Brisse S, McQuiston JR.

Antonie Van Leeuwenhoek. 2018 Jan;111(1):55-72. doi: 10.1007/s10482-017-0926-3. Epub 2017 Aug 30.

16.

Enterococcus crotali sp. nov., isolated from faecal material of a timber rattlesnake.

McLaughlin RW, Shewmaker PL, Whitney AM, Humrighouse BW, Lauer AC, Loparev VN, Gulvik CA, Cochran PA, Dowd SE.

Int J Syst Evol Microbiol. 2017 Jun;67(6):1984-1989. doi: 10.1099/ijsem.0.001900. Epub 2017 Jun 20.

PMID:
28632114
17.

Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.

Perrin A, Larsonneur E, Nicholson AC, Edwards DJ, Gundlach KM, Whitney AM, Gulvik CA, Bell ME, Rendueles O, Cury J, Hugon P, Clermont D, Enouf V, Loparev V, Juieng P, Monson T, Warshauer D, Elbadawi LI, Walters MS, Crist MB, Noble-Wang J, Borlaug G, Rocha EPC, Criscuolo A, Touchon M, Davis JP, Holt KE, McQuiston JR, Brisse S.

Nat Commun. 2017 May 24;8:15483. doi: 10.1038/ncomms15483.

18.

Evaluation of a TaqMan Array Card for Detection of Central Nervous System Infections.

Onyango CO, Loparev V, Lidechi S, Bhullar V, Schmid DS, Radford K, Lo MK, Rota P, Johnson BW, Munoz J, Oneko M, Burton D, Black CM, Neatherlin J, Montgomery JM, Fields B.

J Clin Microbiol. 2017 Jul;55(7):2035-2044. doi: 10.1128/JCM.02469-16. Epub 2017 Apr 12.

19.

High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States.

Lindsey RL, Batra D, Rowe L, Loparev VN, Stripling D, Garcia-Toledo L, Knipe K, Juieng P, Sheth M, Martin H, Laufer Halpin A.

Genome Announc. 2017 Mar 16;5(11). pii: e01725-16. doi: 10.1128/genomeA.01725-16.

20.

First Full Draft Genome Sequence of Plasmodium brasilianum.

Talundzic E, Ravishankar S, Nayak V, Patel DS, Olsen C, Sheth M, Batra D, Loparev V, Vannberg FO, Udhayakumar V, Barnwell JW.

Genome Announc. 2017 Feb 9;5(6). pii: e01566-16. doi: 10.1128/genomeA.01566-16.

21.

The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement.

Weigand MR, Peng Y, Loparev V, Batra D, Bowden KE, Burroughs M, Cassiday PK, Davis JK, Johnson T, Juieng P, Knipe K, Mathis MH, Pruitt AM, Rowe L, Sheth M, Tondella ML, Williams MM.

J Bacteriol. 2017 Mar 28;199(8). pii: e00806-16. doi: 10.1128/JB.00806-16. Print 2017 Apr 15.

22.

Complete Genome Sequences of Four Bordetella pertussis Vaccine Reference Strains from Serum Institute of India.

Weigand MR, Peng Y, Loparev V, Johnson T, Juieng P, Gairola S, Kumar R, Shaligram U, Gowrishankar R, Moura H, Rees J, Schieltz DM, Williamson Y, Woolfitt A, Barr J, Tondella ML, Williams MM.

Genome Announc. 2016 Dec 22;4(6). pii: e01404-16. doi: 10.1128/genomeA.01404-16.

23.

Complete Genome Sequences of Enterococcus rotai LMG 26678T and Enterococcus silesiacus LMG 23085T.

Lauer AC, Humrighouse BW, Loparev V, Shewmaker PL, Whitney AM, McQuiston JR, McLaughlin RW.

Genome Announc. 2016 Dec 15;4(6). pii: e01387-16. doi: 10.1128/genomeA.01387-16.

24.

Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67).

Bugrysheva JV, Cherney B, Sue D, Conley AB, Rowe LA, Knipe KM, Frace MA, Loparev VN, Avila JR, Anderson K, Hodge DR, Pillai SP, Weigel LM.

Genome Announc. 2016 Nov 17;4(6). pii: e01294-16. doi: 10.1128/genomeA.01294-16.

25.

Distribution and Diversity of Bartonella washoensis Strains in Ground Squirrels from California and Their Potential Link to Human Cases.

Osikowicz LM, Billeter SA, Rizzo MF, Rood MP, Freeman AN, Burns JE, Hu R, Juieng P, Loparev V, Kosoy M.

Vector Borne Zoonotic Dis. 2016 Nov;16(11):683-690. Epub 2016 Oct 5.

26.

Complete Genome Sequences of Four Different Bordetella sp. Isolates Causing Human Respiratory Infections.

Weigand MR, Peng Y, Loparev V, Batra D, Bowden KE, Cassiday PK, Davis JK, Johnson T, Juieng P, Miner CE, Rowe L, Sheth M, Tondella ML, Williams MM.

Genome Announc. 2016 Oct 6;4(5). pii: e01080-16. doi: 10.1128/genomeA.01080-16.

27.

Complete Genome Sequences of Bordetella pertussis Vaccine Reference Strains 134 and 10536.

Weigand MR, Peng Y, Loparev V, Batra D, Burroughs M, Johnson T, Juieng P, Rowe L, Tondella ML, Williams MM.

Genome Announc. 2016 Sep 15;4(5). pii: e00979-16. doi: 10.1128/genomeA.00979-16.

28.

High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.

Lindsey RL, Rowe L, Garcia-Toledo L, Loparev V, Knipe K, Stripling D, Martin H, Trees E, Juieng P, Batra D, Strockbine N.

Genome Announc. 2016 Jun 30;4(3). pii: e00626-16. doi: 10.1128/genomeA.00626-16.

29.

Complete Genome Sequences of Four Strains from the 2015-2016 Elizabethkingia anophelis Outbreak.

Nicholson AC, Whitney AM, Emery BD, Bell ME, Gartin JT, Humrighouse BW, Loparev VN, Batra D, Sheth M, Rowe LA, Juieng P, Knipe K, Gulvik C, McQuiston JR.

Genome Announc. 2016 Jun 16;4(3). pii: e00563-16. doi: 10.1128/genomeA.00563-16.

30.

Genome Structural Diversity among 31 Bordetella pertussis Isolates from Two Recent U.S. Whooping Cough Statewide Epidemics.

Bowden KE, Weigand MR, Peng Y, Cassiday PK, Sammons S, Knipe K, Rowe LA, Loparev V, Sheth M, Weening K, Tondella ML, Williams MM.

mSphere. 2016 May 11;1(3). pii: e00036-16. doi: 10.1128/mSphere.00036-16. eCollection 2016 May-Jun.

31.

Three Genome Sequences of Legionella pneumophila subsp. pascullei Associated with Colonization of a Health Care Facility.

Kozak-Muiznieks NA, Morrison SS, Sammons S, Rowe LA, Sheth M, Frace M, Lucas CE, Loparev VN, Raphael BH, Winchell JM.

Genome Announc. 2016 May 5;4(3). pii: e00335-16. doi: 10.1128/genomeA.00335-16.

32.

Molecular detection of airborne Coccidioides in Tucson, Arizona.

Chow NA, Griffin DW, Barker BM, Loparev VN, Litvintseva AP.

Med Mycol. 2016 Aug 1;54(6):584-92. doi: 10.1093/mmy/myw022. Epub 2016 May 3.

33.

Correction for Weigand et al., Complete Genome Sequences of Two Bordetella hinzii Strains Isolated from Humans.

Weigand MR, Changayil S, Kulasekarapandian Y, Batra D, Loparev V, Juieng P, Rowe L, Sheth M, Davis JK, Tondella ML.

Genome Announc. 2016 Jan 14;4(1). pii: e01639-15. doi: 10.1128/genomeA.01639-15. No abstract available.

34.

Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.

Lindsey RL, Knipe K, Rowe L, Garcia-Toledo L, Loparev V, Juieng P, Trees E, Strockbine N, Stripling D, Gerner-Smidt P.

Genome Announc. 2015 Dec 17;3(6). pii: e01496-15. doi: 10.1128/genomeA.01496-15.

35.

Genome Sequences of Oblitimonas alkaliphila gen. nov. sp. nov. (Proposed), a Novel Bacterium of the Pseudomonadaceae Family.

Lauer AC, Nicholson AC, Humrighouse BW, Emery B, Drobish A, Juieng P, Loparev V, McQuiston JR.

Genome Announc. 2015 Dec 17;3(6). pii: e01474-15. doi: 10.1128/genomeA.01474-15.

36.

Finished Annotated Genome Sequence of Burkholderia pseudomallei Strain Bp1651, a Multidrug-Resistant Clinical Isolate.

Bugrysheva JV, Sue D, Hakovirta J, Loparev VN, Knipe K, Sammons SA, Ranganathan-Ganakammal S, Changayil S, Srinivasamoorthy G, Weil MR, Tatusov RL, Gee JE, Elrod MG, Hoffmaster AR, Weigel LM.

Genome Announc. 2015 Dec 3;3(6). pii: e01427-15. doi: 10.1128/genomeA.01427-15.

37.

Genome Sequence of a Urease-Positive Campylobacter lari Strain.

Meinersmann RJ, Bono JL, Lindsey RL, Genzlinger LL, Loparev VN, Oakley BB.

Genome Announc. 2015 Oct 15;3(5). pii: e01191-15. doi: 10.1128/genomeA.01191-15.

38.

Complete Genome Sequence of Strain H5989 of a Novel Devosia Species.

Nicholson AC, Whitney AM, Humrighouse B, Emery B, Loparev V, McQuiston JR.

Genome Announc. 2015 Sep 3;3(5). pii: e00934-15. doi: 10.1128/genomeA.00934-15.

39.

Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.

Lindsey RL, Trees E, Sammons S, Loparev V, Frace M, Strockbine N, Sabol AL, Sowers E, Stripling D, Martin H, Knipe K, Rowe L, Gerner-Smidt P.

Genome Announc. 2014 Jul 10;2(4). pii: e00501-14. doi: 10.1128/genomeA.00501-14.

40.

Campylobacter fetus subsp. testudinum subsp. nov., isolated from humans and reptiles.

Fitzgerald C, Tu ZC, Patrick M, Stiles T, Lawson AJ, Santovenia M, Gilbert MJ, van Bergen M, Joyce K, Pruckler J, Stroika S, Duim B, Miller WG, Loparev V, Sinnige JC, Fields PI, Tauxe RV, Blaser MJ, Wagenaar JA.

Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):2944-8. doi: 10.1099/ijs.0.057778-0. Epub 2014 Jun 4.

PMID:
24899653
41.

Draft genome sequences of Bordetella holmesii strains from blood (F627) and nasopharynx (H558).

Tatti KM, Loparev VN, Ranganathanganakammal S, Changayil S, Frace M, Weil MR, Sammons S, Maccannell D, Mayer LW, Tondella ML.

Genome Announc. 2013 Mar 21;1(2):e0005613. doi: 10.1128/genomeA.00056-13.

42.

[Genotyping of varicella zoster virus strains isolated in Mongolia].

Enskhsaĭkhan D, Loparev VN, Bostik V, Tuul P, Darmaa B, Demkin VV, Niamdavaa P.

Vopr Virusol. 2010 Sep-Oct;55(5):40-3. Russian.

PMID:
21260996
43.

Evaluation of laboratory methods for diagnosis of varicella.

Leung J, Harpaz R, Baughman AL, Heath K, Loparev V, Vázquez M, Watson BM, Schmid DS.

Clin Infect Dis. 2010 Jul 1;51(1):23-32. doi: 10.1086/653113.

PMID:
20504232
44.

Distribution of varicella-zoster virus (VZV) wild-type genotypes in northern and southern Europe: evidence for high conservation of circulating genotypes.

Loparev VN, Rubtcova EN, Bostik V, Tzaneva V, Sauerbrei A, Robo A, Sattler-Dornbacher E, Hanovcova I, Stepanova V, Splino M, Eremin V, Koskiniemi M, Vankova OE, Schmid DS.

Virology. 2009 Jan 20;383(2):216-25. doi: 10.1016/j.virol.2008.10.026. Epub 2008 Nov 20.

45.

Laboratory diagnosis and characteristics of breakthrough varicella in children.

Weinmann S, Chun C, Mullooly JP, Riedlinger K, Houston H, Loparev VN, Schmid DS, Seward JF.

J Infect Dis. 2008 Mar 1;197 Suppl 2:S132-8. doi: 10.1086/522148.

PMID:
18419386
46.

Transmission of a newly characterized strain of varicella-zoster virus from a patient with herpes zoster in a long-term-care facility, West Virginia, 2004.

Lopez AS, Burnett-Hartman A, Nambiar R, Ritz L, Owens P, Loparev VN, Guris D, Schmid DS.

J Infect Dis. 2008 Mar 1;197(5):646-53. doi: 10.1086/527419.

PMID:
18260757
47.

Identification of five major and two minor genotypes of varicella-zoster virus strains: a practical two-amplicon approach used to genotype clinical isolates in Australia and New Zealand.

Loparev VN, Rubtcova EN, Bostik V, Govil D, Birch CJ, Druce JD, Schmid DS, Croxson MC.

J Virol. 2007 Dec;81(23):12758-65. Epub 2007 Sep 26.

48.

Genotypic analysis of varicella-zoster virus and its seroprevalence in Finland.

Koskiniemi M, Lappalainen M, Schmid DS, Rubtcova E, Loparev VN.

Clin Vaccine Immunol. 2007 Sep;14(9):1057-61. Epub 2007 Jul 11.

49.

DNA sequence variability in isolates recovered from patients with postvaccination rash or herpes zoster caused by Oka varicella vaccine.

Loparev VN, Rubtcova E, Seward JF, Levin MJ, Schmid DS.

J Infect Dis. 2007 Feb 15;195(4):502-10. Epub 2007 Jan 10.

PMID:
17230409
50.

Toward universal varicella-zoster virus (VZV) genotyping: diversity of VZV strains from France and Spain.

Loparev V, Martro E, Rubtcova E, Rodrigo C, Piette JC, Caumes E, Vernant JP, Schmid DS, Fillet AM.

J Clin Microbiol. 2007 Feb;45(2):559-63. Epub 2006 Nov 29.

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