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Items: 1 to 50 of 239

1.

A better way to discover gene function in the social amoeba Dictyostelium discoideum.

Loomis WF.

Genome Res. 2016 Sep;26(9):1161-4. doi: 10.1101/gr.209932.116. No abstract available.

2.

Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum.

Rosengarten RD, Santhanam B, Fuller D, Katoh-Kurasawa M, Loomis WF, Zupan B, Shaulsky G.

BMC Genomics. 2015 Apr 13;16:294. doi: 10.1186/s12864-015-1491-7.

3.

Genetic control of morphogenesis in Dictyostelium.

Loomis WF.

Dev Biol. 2015 Jun 15;402(2):146-61. doi: 10.1016/j.ydbio.2015.03.016. Epub 2015 Apr 11. Review.

4.

Cellular memory in eukaryotic chemotaxis.

Skoge M, Yue H, Erickstad M, Bae A, Levine H, Groisman A, Loomis WF, Rappel WJ.

Proc Natl Acad Sci U S A. 2014 Oct 7;111(40):14448-53. doi: 10.1073/pnas.1412197111. Epub 2014 Sep 23.

5.

Cell substratum adhesion during early development of Dictyostelium discoideum.

Tarantola M, Bae A, Fuller D, Bodenschatz E, Rappel WJ, Loomis WF.

PLoS One. 2014 Sep 23;9(9):e106574. doi: 10.1371/journal.pone.0106574. eCollection 2014.

6.

Cell signaling during development of Dictyostelium.

Loomis WF.

Dev Biol. 2014 Jul 1;391(1):1-16. doi: 10.1016/j.ydbio.2014.04.001. Epub 2014 Apr 12. Review.

7.

Comparative genomics of the dictyostelids.

Loomis WF.

Methods Mol Biol. 2013;983:39-58. doi: 10.1007/978-1-62703-302-2_3.

PMID:
23494301
8.

Innate non-specific cell substratum adhesion.

Loomis WF, Fuller D, Gutierrez E, Groisman A, Rappel WJ.

PLoS One. 2012;7(8):e42033. doi: 10.1371/journal.pone.0042033. Epub 2012 Aug 31.

9.

Incoherent feedforward control governs adaptation of activated ras in a eukaryotic chemotaxis pathway.

Takeda K, Shao D, Adler M, Charest PG, Loomis WF, Levine H, Groisman A, Rappel WJ, Firtel RA.

Sci Signal. 2012 Jan 3;5(205):ra2. doi: 10.1126/scisignal.2002413.

10.

Activated membrane patches guide chemotactic cell motility.

Hecht I, Skoge ML, Charest PG, Ben-Jacob E, Firtel RA, Loomis WF, Levine H, Rappel WJ.

PLoS Comput Biol. 2011 Jun;7(6):e1002044. doi: 10.1371/journal.pcbi.1002044. Epub 2011 Jun 30.

11.

The polyketide MPBD initiates the SDF-1 signaling cascade that coordinates terminal differentiation in Dictyostelium.

Anjard C, Su Y, Loomis WF.

Eukaryot Cell. 2011 Jul;10(7):956-63. doi: 10.1128/EC.05053-11. Epub 2011 May 20.

12.

Developmental changes in transcriptional profiles.

Loomis WF, Shaulsky G.

Dev Growth Differ. 2011 May;53(4):567-75. doi: 10.1111/j.1440-169X.2010.01241.x. Epub 2011 Mar 30. Review.

PMID:
21447097
13.

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum.

Sucgang R, Kuo A, Tian X, Salerno W, Parikh A, Feasley CL, Dalin E, Tu H, Huang E, Barry K, Lindquist E, Shapiro H, Bruce D, Schmutz J, Salamov A, Fey P, Gaudet P, Anjard C, Babu MM, Basu S, Bushmanova Y, van der Wel H, Katoh-Kurasawa M, Dinh C, Coutinho PM, Saito T, Elias M, Schaap P, Kay RR, Henrissat B, Eichinger L, Rivero F, Putnam NH, West CM, Loomis WF, Chisholm RL, Shaulsky G, Strassmann JE, Queller DC, Kuspa A, Grigoriev IV.

Genome Biol. 2011;12(2):R20. doi: 10.1186/gb-2011-12-2-r20. Epub 2011 Feb 28.

14.

Gradient sensing in defined chemotactic fields.

Skoge M, Adler M, Groisman A, Levine H, Loomis WF, Rappel WJ.

Integr Biol (Camb). 2010 Nov;2(11-12):659-68. doi: 10.1039/c0ib00033g. Epub 2010 Sep 30.

15.

Unconventional secretion of AcbA in Dictyostelium discoideum through a vesicular intermediate.

Cabral M, Anjard C, Malhotra V, Loomis WF, Kuspa A.

Eukaryot Cell. 2010 Jul;9(7):1009-17. doi: 10.1128/EC.00337-09. Epub 2010 May 14.

16.

External and internal constraints on eukaryotic chemotaxis.

Fuller D, Chen W, Adler M, Groisman A, Levine H, Rappel WJ, Loomis WF.

Proc Natl Acad Sci U S A. 2010 May 25;107(21):9656-9. doi: 10.1073/pnas.0911178107. Epub 2010 May 10.

17.

Pregnenolone sulfate and cortisol induce secretion of acyl-CoA-binding protein and its conversion into endozepines from astrocytes.

Loomis WF, Behrens MM, Williams ME, Anjard C.

J Biol Chem. 2010 Jul 9;285(28):21359-65. doi: 10.1074/jbc.M110.105858. Epub 2010 May 7.

18.

Phenomenological approach to eukaryotic chemotactic efficiency.

Hu B, Fuller D, Loomis WF, Levine H, Rappel WJ.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Mar;81(3 Pt 1):031906. Epub 2010 Mar 8.

19.

Conserved developmental transcriptomes in evolutionarily divergent species.

Parikh A, Miranda ER, Katoh-Kurasawa M, Fuller D, Rot G, Zagar L, Curk T, Sucgang R, Chen R, Zupan B, Loomis WF, Kuspa A, Shaulsky G.

Genome Biol. 2010;11(3):R35. doi: 10.1186/gb-2010-11-3-r35. Epub 2010 Mar 17.

20.

Unconventional secretion of Acb1 is mediated by autophagosomes.

Duran JM, Anjard C, Stefan C, Loomis WF, Malhotra V.

J Cell Biol. 2010 Feb 22;188(4):527-36. doi: 10.1083/jcb.200911154. Epub 2010 Feb 15.

21.

Unconventional secretion of Pichia pastoris Acb1 is dependent on GRASP protein, peroxisomal functions, and autophagosome formation.

Manjithaya R, Anjard C, Loomis WF, Subramani S.

J Cell Biol. 2010 Feb 22;188(4):537-46. doi: 10.1083/jcb.200911149. Epub 2010 Feb 15.

22.

Steroids initiate a signaling cascade that triggers rapid sporulation in Dictyostelium.

Anjard C, Su Y, Loomis WF.

Development. 2009 Mar;136(5):803-12. doi: 10.1242/dev.032607. Epub 2009 Jan 28.

23.

Eukaryotic chemotaxis.

Rappel WJ, Loomis WF.

Wiley Interdiscip Rev Syst Biol Med. 2009 Jul-Aug;1(1):141-149. doi: 10.1002/wsbm.28.

24.

cAMP oscillations during aggregation of Dictyostelium.

Loomis WF.

Adv Exp Med Biol. 2008;641:39-48. Review.

PMID:
18783170
25.

An immediate-early gene, srsA: its involvement in the starvation response that initiates differentiation of Dictyostelium cells.

Sasaki K, Chae SC, Loomis WF, Iranfar N, Amagai A, Maeda Y.

Differentiation. 2008 Dec;76(10):1093-103. doi: 10.1111/j.1432-0436.2008.00298.x. Epub 2008 Jul 30.

PMID:
18673382
26.

The P450 oxidoreductase, RedA, controls development beyond the mound stage in Dictyostelium discoideum.

Gonzalez-Kristeller DC, Farage L, Fiorini LC, Loomis WF, da Silva AM.

BMC Dev Biol. 2008 Jan 24;8:8. doi: 10.1186/1471-213X-8-8.

27.

Cytokinins induce sporulation in Dictyostelium.

Anjard C, Loomis WF.

Development. 2008 Mar;135(5):819-27. doi: 10.1242/dev.018051. Epub 2008 Jan 23.

28.

Accurate annotation of peptide modifications through unrestrictive database search.

Tanner S, Payne SH, Dasari S, Shen Z, Wilmarth PA, David LL, Loomis WF, Briggs SP, Bafna V.

J Proteome Res. 2008 Jan;7(1):170-81. Epub 2007 Nov 23.

PMID:
18034453
29.

The Golgi-associated protein GRASP is required for unconventional protein secretion during development.

Kinseth MA, Anjard C, Fuller D, Guizzunti G, Loomis WF, Malhotra V.

Cell. 2007 Aug 10;130(3):524-34. Epub 2007 Jul 26.

31.

The Genome of Dictyostelium discoideum.

Kuspa A, Loomis WF.

Methods Mol Biol. 2006;346:15-30. Review.

PMID:
16957282
32.

The Dictyostelium genome.

Loomis WF.

Curr Issues Mol Biol. 2006 Jul;8(2):63-73. Review.

33.
34.

GABA induces terminal differentiation of Dictyostelium through a GABAB receptor.

Anjard C, Loomis WF.

Development. 2006 Jun;133(11):2253-61. Epub 2006 May 3.

35.

Dictyostelium discoideum chemotaxis: threshold for directed motion.

Song L, Nadkarni SM, Bödeker HU, Beta C, Bae A, Franck C, Rappel WJ, Loomis WF, Bodenschatz E.

Eur J Cell Biol. 2006 Sep;85(9-10):981-9. Epub 2006 Mar 10.

PMID:
16529846
36.
37.

Transcriptional regulation of post-aggregation genes in Dictyostelium by a feed-forward loop involving GBF and LagC.

Iranfar N, Fuller D, Loomis WF.

Dev Biol. 2006 Feb 15;290(2):460-9. Epub 2006 Jan 4.

38.

Comparing the Dictyostelium and Entamoeba genomes reveals an ancient split in the Conosa lineage.

Song J, Xu Q, Olsen R, Loomis WF, Shaulsky G, Kuspa A, Sucgang R.

PLoS Comput Biol. 2005 Dec;1(7):e71. Epub 2005 Dec 16.

39.

A collection of amino acid replacement matrices derived from clusters of orthologs.

Olsen R, Loomis WF.

J Mol Evol. 2005 Nov;61(5):659-65. Epub 2005 Oct 20.

PMID:
16245010
40.

Loss of SMEK, a novel, conserved protein, suppresses MEK1 null cell polarity, chemotaxis, and gene expression defects.

Mendoza MC, Du F, Iranfar N, Tang N, Ma H, Loomis WF, Firtel RA.

Mol Cell Biol. 2005 Sep;25(17):7839-53.

41.

Transcriptional switch of the dia1 and impA promoter during the growth/differentiation transition.

Hirose S, Mayanagi T, Pears C, Amagai A, Loomis WF, Maeda Y.

Eukaryot Cell. 2005 Aug;4(8):1477-82.

42.

Peptide signaling during terminal differentiation of Dictyostelium.

Anjard C, Loomis WF.

Proc Natl Acad Sci U S A. 2005 May 24;102(21):7607-11. Epub 2005 May 16.

43.

The genome of the social amoeba Dictyostelium discoideum.

Eichinger L, Pachebat JA, Glöckner G, Rajandream MA, Sucgang R, Berriman M, Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard C, Hemphill L, Bason N, Farbrother P, Desany B, Just E, Morio T, Rost R, Churcher C, Cooper J, Haydock S, van Driessche N, Cronin A, Goodhead I, Muzny D, Mourier T, Pain A, Lu M, Harper D, Lindsay R, Hauser H, James K, Quiles M, Madan Babu M, Saito T, Buchrieser C, Wardroper A, Felder M, Thangavelu M, Johnson D, Knights A, Loulseged H, Mungall K, Oliver K, Price C, Quail MA, Urushihara H, Hernandez J, Rabbinowitsch E, Steffen D, Sanders M, Ma J, Kohara Y, Sharp S, Simmonds M, Spiegler S, Tivey A, Sugano S, White B, Walker D, Woodward J, Winckler T, Tanaka Y, Shaulsky G, Schleicher M, Weinstock G, Rosenthal A, Cox EC, Chisholm RL, Gibbs R, Loomis WF, Platzer M, Kay RR, Williams J, Dear PH, Noegel AA, Barrell B, Kuspa A.

Nature. 2005 May 5;435(7038):43-57.

44.

Intracellular role of adenylyl cyclase in regulation of lateral pseudopod formation during Dictyostelium chemotaxis.

Stepanovic V, Wessels D, Daniels K, Loomis WF, Soll DR.

Eukaryot Cell. 2005 Apr;4(4):775-86.

45.

CbfA, the C-module DNA-binding factor, plays an essential role in the initiation of Dictyostelium discoideum development.

Winckler T, Iranfar N, Beck P, Jennes I, Siol O, Baik U, Loomis WF, Dingermann T.

Eukaryot Cell. 2004 Oct;3(5):1349-58.

46.

Control of cell type proportioning in Dictyostelium discoideum by differentiation-inducing factor as determined by in situ hybridization.

Maruo T, Sakamoto H, Iranfar N, Fuller D, Morio T, Urushihara H, Tanaka Y, Maeda M, Loomis WF.

Eukaryot Cell. 2004 Oct;3(5):1241-8.

47.

RasC plays a role in transduction of temporal gradient information in the cyclic-AMP wave of Dictyostelium discoideum.

Wessels D, Brincks R, Kuhl S, Stepanovic V, Daniels KJ, Weeks G, Lim CJ, Spiegelman G, Fuller D, Iranfar N, Loomis WF, Soll DR.

Eukaryot Cell. 2004 Jun;3(3):646-62.

48.

Periodic signaling controlled by an oscillatory circuit that includes protein kinases ERK2 and PKA.

Maeda M, Lu S, Shaulsky G, Miyazaki Y, Kuwayama H, Tanaka Y, Kuspa A, Loomis WF.

Science. 2004 May 7;304(5672):875-8.

49.
50.

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