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Items: 1 to 50 of 67

1.

A review of domain adaptation without target labels.

Kouw WM, Loog M.

IEEE Trans Pattern Anal Mach Intell. 2019 Oct 7. doi: 10.1109/TPAMI.2019.2945942. [Epub ahead of print]

PMID:
31603771
2.

PRECISE: a domain adaptation approach to transfer predictors of drug response from pre-clinical models to tumors.

Mourragui S, Loog M, van de Wiel MA, Reinders MJT, Wessels LFA.

Bioinformatics. 2019 Jul 15;35(14):i510-i519. doi: 10.1093/bioinformatics/btz372.

3.

Multisite phosphorylation code of CDK.

Örd M, Möll K, Agerova A, Kivi R, Faustova I, Venta R, Valk E, Loog M.

Nat Struct Mol Biol. 2019 Jul;26(7):649-658. doi: 10.1038/s41594-019-0256-4. Epub 2019 Jul 1.

PMID:
31270471
4.

Synthetic-Evolution Reveals Narrow Paths to Regulation of the Saccharomyces cerevisiae Mitotic Kinesin-5 Cin8.

Goldstein A, Goldman D, Valk E, Loog M, Holt LJ, Gheber L.

Int J Biol Sci. 2019 May 2;15(6):1125-1138. doi: 10.7150/ijbs.30543. eCollection 2019.

5.

Cyclin-Specific Docking Mechanisms Reveal the Complexity of M-CDK Function in the Cell Cycle.

Örd M, Venta R, Möll K, Valk E, Loog M.

Mol Cell. 2019 Jul 11;75(1):76-89.e3. doi: 10.1016/j.molcel.2019.04.026. Epub 2019 May 14.

6.

How the cell cycle clock ticks.

Örd M, Loog M.

Mol Biol Cell. 2019 Jan 15;30(2):169-172. doi: 10.1091/mbc.E18-05-0272.

7.

A Clb/Cdk1-mediated regulation of Fkh2 synchronizes CLB expression in the budding yeast cell cycle.

Linke C, Chasapi A, González-Novo A, Al Sawad I, Tognetti S, Klipp E, Loog M, Krobitsch S, Posas F, Xenarios I, Barberis M.

NPJ Syst Biol Appl. 2017 Mar 6;3:7. doi: 10.1038/s41540-017-0008-1. eCollection 2017.

8.

Three Cdk1 sites in the kinesin-5 Cin8 catalytic domain coordinate motor localization and activity during anaphase.

Goldstein A, Siegler N, Goldman D, Judah H, Valk E, Kõivomägi M, Loog M, Gheber L.

Cell Mol Life Sci. 2017 Sep;74(18):3395-3412. doi: 10.1007/s00018-017-2523-z. Epub 2017 Apr 28.

PMID:
28455557
9.

Template Matching via Densities on the Roto-Translation Group.

Bekkers EJ, Loog M, Romeny BMTH, Duits R.

IEEE Trans Pattern Anal Mach Intell. 2018 Feb;40(2):452-466. doi: 10.1109/TPAMI.2017.2652452. Epub 2017 Feb 24.

PMID:
28252390
10.

Natural Variation in Arabidopsis Cvi-0 Accession Reveals an Important Role of MPK12 in Guard Cell CO2 Signaling.

Jakobson L, Vaahtera L, Tõldsepp K, Nuhkat M, Wang C, Wang YS, Hõrak H, Valk E, Pechter P, Sindarovska Y, Tang J, Xiao C, Xu Y, Gerst Talas U, García-Sosa AT, Kangasjärvi S, Maran U, Remm M, Roelfsema MR, Hu H, Kangasjärvi J, Loog M, Schroeder JI, Kollist H, Brosché M.

PLoS Biol. 2016 Dec 6;14(12):e2000322. doi: 10.1371/journal.pbio.2000322. eCollection 2016 Dec.

11.

A Dominant Mutation in the HT1 Kinase Uncovers Roles of MAP Kinases and GHR1 in CO2-Induced Stomatal Closure.

Hõrak H, Sierla M, Tõldsepp K, Wang C, Wang YS, Nuhkat M, Valk E, Pechter P, Merilo E, Salojärvi J, Overmyer K, Loog M, Brosché M, Schroeder JI, Kangasjärvi J, Kollist H.

Plant Cell. 2016 Oct;28(10):2493-2509. Epub 2016 Sep 30.

12.

Dissimilarity-Based Ensembles for Multiple Instance Learning.

Cheplygina V, Tax DM, Loog M.

IEEE Trans Neural Netw Learn Syst. 2016 Jun;27(6):1379-91. doi: 10.1109/TNNLS.2015.2424254.

PMID:
27214351
13.

Contrastive Pessimistic Likelihood Estimation for Semi-Supervised Classification.

Loog M.

IEEE Trans Pattern Anal Mach Intell. 2016 Mar;38(3):462-75. doi: 10.1109/TPAMI.2015.2452921.

PMID:
27046491
14.

Semi-supervised nearest mean classification through a constrained log-likelihood.

Loog M, Jensen AC.

IEEE Trans Neural Netw Learn Syst. 2015 May;26(5):995-1006. doi: 10.1109/TNNLS.2014.2329567.

PMID:
25881369
15.

Compartmentalization of a bistable switch enables memory to cross a feedback-driven transition.

Doncic A, Atay O, Valk E, Grande A, Bush A, Vasen G, Colman-Lerner A, Loog M, Skotheim JM.

Cell. 2015 Mar 12;160(6):1182-95. doi: 10.1016/j.cell.2015.02.032.

16.

A docking interface in the cyclin Cln2 promotes multi-site phosphorylation of substrates and timely cell-cycle entry.

Bhaduri S, Valk E, Winters MJ, Gruessner B, Loog M, Pryciak PM.

Curr Biol. 2015 Feb 2;25(3):316-325. doi: 10.1016/j.cub.2014.11.069. Epub 2015 Jan 22.

17.

Multistep phosphorylation systems: tunable components of biological signaling circuits.

Valk E, Venta R, Ord M, Faustova I, Kõivomägi M, Loog M.

Mol Biol Cell. 2014 Nov 5;25(22):3456-60. doi: 10.1091/mbc.E14-02-0774.

18.

Diagnostic classification of arterial spin labeling and structural MRI in presenile early stage dementia.

Bron EE, Steketee RM, Houston GC, Oliver RA, Achterberg HC, Loog M, van Swieten JC, Hammers A, Niessen WJ, Smits M, Klein S; Alzheimer's Disease Neuroimaging Initiative.

Hum Brain Mapp. 2014 Sep;35(9):4916-31. doi: 10.1002/hbm.22522. Epub 2014 Apr 3.

PMID:
24700485
19.

Protein kinase inhibitor SU6668 attenuates positive regulation of Gli proteins in cancer and multipotent progenitor cells.

Piirsoo A, Kasak L, Kauts ML, Loog M, Tints K, Uusen P, Neuman T, Piirsoo M.

Biochim Biophys Acta. 2014 Apr;1843(4):703-14. doi: 10.1016/j.bbamcr.2014.01.003. Epub 2014 Jan 10.

20.

Cks confers specificity to phosphorylation-dependent CDK signaling pathways.

McGrath DA, Balog ER, Kõivomägi M, Lucena R, Mai MV, Hirschi A, Kellogg DR, Loog M, Rubin SM.

Nat Struct Mol Biol. 2013 Dec;20(12):1407-14. doi: 10.1038/nsmb.2707. Epub 2013 Nov 3.

21.

Multisite phosphorylation networks as signal processors for Cdk1.

Kõivomägi M, Ord M, Iofik A, Valk E, Venta R, Faustova I, Kivi R, Balog ER, Rubin SM, Loog M.

Nat Struct Mol Biol. 2013 Dec;20(12):1415-24. doi: 10.1038/nsmb.2706. Epub 2013 Nov 3.

22.

Femoral cartilage segmentation in knee MRI scans using two stage voxel classification.

Prasoon A, Igel C, Loog M, Lauze F, Dam EB, Nielsen M.

Conf Proc IEEE Eng Med Biol Soc. 2013;2013:5469-72. doi: 10.1109/EMBC.2013.6610787.

PMID:
24110974
23.

Kinetics of acrylodan-labelled cAMP-dependent protein kinase catalytic subunit denaturation.

Kivi R, Loog M, Jemth P, Järv J.

Protein J. 2013 Oct;32(7):519-25. doi: 10.1007/s10930-013-9511-4.

PMID:
24048767
24.

Multiple Pho85-dependent mechanisms control G1 cyclin abundance in response to nutrient stress.

Valk E, Loog M.

Mol Cell Biol. 2013 Apr;33(7):1270-2. doi: 10.1128/MCB.00086-13. Epub 2013 Feb 4. No abstract available.

25.

Automated colorectal cancer diagnosis for whole-slice histopathology.

Kalkan H, Nap M, Duin RP, Loog M.

Med Image Comput Comput Assist Interv. 2012;15(Pt 3):550-7.

PMID:
23286174
26.

Double-negative feedback between S-phase cyclin-CDK and CKI generates abruptness in the G1/S switch.

Venta R, Valk E, Kõivomägi M, Loog M.

Front Physiol. 2012 Dec 6;3:459. doi: 10.3389/fphys.2012.00459. eCollection 2012.

27.

Probing L-pyruvate kinase regulatory phosphorylation site by mutagenesis.

Faustova I, Loog M, Järv J.

Protein J. 2012 Oct;31(7):592-7. doi: 10.1007/s10930-012-9438-1.

PMID:
22878931
28.

Shape-based assessment of vertebral fracture risk in postmenopausal women using discriminative shape alignment.

Crimi A, Loog M, de Bruijne M, Nielsen M, Lillholm M.

Acad Radiol. 2012 Apr;19(4):446-54. doi: 10.1016/j.acra.2011.12.012. Epub 2012 Feb 4.

PMID:
22306533
29.

Cdk1: a kinase with changing substrate specificity.

Kõivomägi M, Loog M.

Cell Cycle. 2011 Nov 1;10(21):3625-6. doi: 10.4161/cc.10.21.17854. Epub 2011 Nov 1. No abstract available.

PMID:
22033215
30.

Cascades of multisite phosphorylation control Sic1 destruction at the onset of S phase.

Kõivomägi M, Valk E, Venta R, Iofik A, Lepiku M, Balog ER, Rubin SM, Morgan DO, Loog M.

Nature. 2011 Oct 12;480(7375):128-31. doi: 10.1038/nature10560.

31.

Dynamics of Cdk1 substrate specificity during the cell cycle.

Kõivomägi M, Valk E, Venta R, Iofik A, Lepiku M, Morgan DO, Loog M.

Mol Cell. 2011 Jun 10;42(5):610-23. doi: 10.1016/j.molcel.2011.05.016.

32.

Phospho-regulation of kinesin-5 during anaphase spindle elongation.

Avunie-Masala R, Movshovich N, Nissenkorn Y, Gerson-Gurwitz A, Fridman V, Kõivomägi M, Loog M, Hoyt MA, Zaritsky A, Gheber L.

J Cell Sci. 2011 Mar 15;124(Pt 6):873-8. doi: 10.1242/jcs.077396.

33.

A novel and automatic mammographic texture resemblance marker is an independent risk factor for breast cancer.

Nielsen M, Karemore G, Loog M, Raundahl J, Karssemeijer N, Otten JD, Karsdal MA, Vachon CM, Christiansen C.

Cancer Epidemiol. 2011 Aug;35(4):381-7. doi: 10.1016/j.canep.2010.10.011. Epub 2010 Dec 10.

PMID:
21146484
34.

A texton-based approach for the classification of lung parenchyma in CT images.

Gangeh MJ, Sørensen L, Shaker SB, Kamel MS, de Bruijne M, Loog M.

Med Image Comput Comput Assist Interv. 2010;13(Pt 3):595-602.

PMID:
20879449
35.

Image dissimilarity-based quantification of lung disease from CT.

Sørensen L, Loog M, Lo P, Ashraf H, Dirksen A, Duin RP, de Bruijne M.

Med Image Comput Comput Assist Interv. 2010;13(Pt 1):37-44.

PMID:
20879212
36.

On combining computer-aided detection systems.

Niemeijer M, Loog M, Abramoff MD, Viergever MA, Prokop M, van Ginneken B.

IEEE Trans Med Imaging. 2011 Feb;30(2):215-23. doi: 10.1109/TMI.2010.2072789. Epub 2010 Sep 2.

PMID:
20813633
37.

The improbability of harris interest points.

Loog M, Lauze F.

IEEE Trans Pattern Anal Mach Intell. 2010 Jun;32(6):1141-7. doi: 10.1109/TPAMI.2010.53.

PMID:
20431138
38.

Breast density changes associated with postmenopausal hormone therapy: post hoc radiologist- and computer-based analyses.

Nielsen M, Pettersen PC, Alexandersen P, Karemore G, Raundahl J, Loog M, Christiansen C.

Menopause. 2010 Jul;17(4):772-8. doi: 10.1097/gme.0b013e3181cd4172.

PMID:
20386343
39.

A framework for optimizing measurement weight maps to minimize the required sample size.

Qazi AA, Jørgensen DR, Lillholm M, Loog M, Nielsen M, Dam EB.

Med Image Anal. 2010 Jun;14(3):255-64. doi: 10.1016/j.media.2010.01.004. Epub 2010 Feb 1.

PMID:
20189869
40.

Ozone-triggered rapid stomatal response involves the production of reactive oxygen species, and is controlled by SLAC1 and OST1.

Vahisalu T, Puzõrjova I, Brosché M, Valk E, Lepiku M, Moldau H, Pechter P, Wang YS, Lindgren O, Salojärvi J, Loog M, Kangasjärvi J, Kollist H.

Plant J. 2010 May;62(3):442-53. doi: 10.1111/j.1365-313X.2010.04159.x. Epub 2010 Feb 1.

41.

Discriminative shape alignment.

Loog M, de Bruijne M.

Inf Process Med Imaging. 2009;21:459-66.

PMID:
19694285
42.

Identification of progressors in osteoarthritis by combining biochemical and MRI-based markers.

Dam EB, Loog M, Christiansen C, Byrjalsen I, Folkesson J, Nielsen M, Qazi AA, Pettersen PC, Garnero P, Karsdal MA.

Arthritis Res Ther. 2009;11(4):R115. doi: 10.1186/ar2774. Epub 2009 Jul 24.

43.

Quantitative comparison of spot detection methods in fluorescence microscopy.

Smal I, Loog M, Niessen W, Meijering E.

IEEE Trans Med Imaging. 2010 Feb;29(2):282-301. doi: 10.1109/TMI.2009.2025127. Epub 2009 Jun 23.

PMID:
19556194
44.

Low-dose transdermal estradiol induces breast density and heterogeneity changes comparable to those of raloxifene.

Nielsen M, Raundahl J, Pettersen PC, Loog M, Karemore G, Karsdal MA, Christiansen C.

Menopause. 2009 Jul-Aug;16(4):785-91. doi: 10.1097/gme.0b013e318199d07f.

PMID:
19322115
45.

Efficient segmentation by sparse pixel classification.

Dam EB, Loog M.

IEEE Trans Med Imaging. 2008 Oct;27(10):1525-34. doi: 10.1109/TMI.2008.923961.

PMID:
18815104
46.

Automated effect-specific mammographic pattern measures.

Raundahl J, Loog M, Pettersen P, Tanko LB, Nielsen M.

IEEE Trans Med Imaging. 2008 Aug;27(8):1054-60. doi: 10.1109/TMI.2008.917245.

PMID:
18672423
47.

Linear dimensionality reduction via a heteroscedastic extension of LDA: the Chernoff criterion.

Loog M, Duin RP.

IEEE Trans Pattern Anal Mach Intell. 2004 Jun;26(6):732-9. doi: 10.1109/TPAMI.2004.13.

PMID:
18579934
48.

On distributional assumptions and whitened cosine similarities.

Loog M.

IEEE Trans Pattern Anal Mach Intell. 2008 Jun;30(6):1114-5. doi: 10.1109/TPAMI.2007.70838.

PMID:
18421115
49.

Parallel assessment of the impact of different hormone replacement therapies on breast density by radiologist- and computer-based analyses of mammograms.

Pettersen PC, Raundahl J, Loog M, Nielsen M, Tankó LB, Christiansen C.

Climacteric. 2008 Apr;11(2):135-43. doi: 10.1080/13697130801930385.

PMID:
18365856
50.

Quantifying effect-specific mammographic density.

Raundahl J, Loog M, Pettersen P, Nielsen M.

Med Image Comput Comput Assist Interv. 2007;10(Pt 2):580-7.

PMID:
18044615

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