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Proficiency Testing of Standardized Samples Shows High Interlaboratory Agreement for Clinical Next Generation Sequencing-Based Hematologic Malignancy Assays With Survey Material-Specific Differences in Variant Frequencies.

Keegan A, Bridge JA, Lindeman NI, Long TA, Merker JD, Moncur JT, Montgomery ND, Nagarajan R, Rothberg PG, Routbort MJ, Vasalos P, Xian R, Kim AS.

Arch Pathol Lab Med. 2020 Jan 27. doi: 10.5858/arpa.2019-0352-CP. [Epub ahead of print]


Automated Imaging, Tracking, and Analytics Pipeline for Differentiating Environmental Effects on Root Meristematic Cell Division.

Buckner E, Madison I, Chou H, Matthiadis A, Melvin CE, Sozzani R, Williams C, Long TA.

Front Plant Sci. 2019 Nov 19;10:1487. doi: 10.3389/fpls.2019.01487. eCollection 2019.


Kin recognition and co-operative foraging in Drosophila melanogaster larvae.

Khodaei L, Long TAF.

J Evol Biol. 2019 Dec;32(12):1352-1361. doi: 10.1111/jeb.13531. Epub 2019 Oct 11.


Keep talking: crosstalk between iron and sulfur networks fine-tunes growth and development to promote survival under iron limitation.

Mendoza-Cózatl DG, Gokul A, Carelse MF, Jobe TO, Long TA, Keyster M.

J Exp Bot. 2019 Aug 19;70(16):4197-4210. doi: 10.1093/jxb/erz290.


Performance Comparison of Different Analytic Methods in Proficiency Testing for Mutations in the BRAF, EGFR, and KRAS Genes: A Study of the College of American Pathologists Molecular Oncology Committee.

Moncur JT, Bartley AN, Bridge JA, Kamel-Reid S, Lazar AJ, Lindeman NI, Long TA, Merker JD, Rai AJ, Rimm DL, Rothberg PG, Vasalos P, Kim AS.

Arch Pathol Lab Med. 2019 Oct;143(10):1203-1211. doi: 10.5858/arpa.2018-0396-CP. Epub 2019 Apr 10.


Spatial environmental complexity mediates sexual conflict and sexual selection in Drosophila melanogaster.

Malek HL, Long TAF.

Ecol Evol. 2019 Jan 30;9(5):2651-2663. doi: 10.1002/ece3.4932. eCollection 2019 Mar.


Next-Generation Sequencing (NGS) Methods Show Superior or Equivalent Performance to Non-NGS Methods on BRAF, EGFR, and KRAS Proficiency Testing Samples.

Surrey LF, Oakley FD, Merker JD, Long TA, Vasalos P, Moncur JT, Kim AS.

Arch Pathol Lab Med. 2019 Aug;143(8):980-984. doi: 10.5858/arpa.2018-0394-CP. Epub 2019 Mar 13.


Hemerythrin E3 Ubiquitin Ligases as Negative Regulators of Iron Homeostasis in Plants.

Rodríguez-Celma J, Chou H, Kobayashi T, Long TA, Balk J.

Front Plant Sci. 2019 Feb 13;10:98. doi: 10.3389/fpls.2019.00098. eCollection 2019. Review.


Genetic trade-offs between male reproductive traits in Drosophila melanogaster.

Filice DCS, Long TAF.

Biol Lett. 2018 Oct 17;14(10). pii: 20180474. doi: 10.1098/rsbl.2018.0474.


The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis.

Samira R, Li B, Kliebenstein D, Li C, Davis E, Gillikin JW, Long TA.

Plant Mol Biol. 2018 Jul;97(4-5):297-309. doi: 10.1007/s11103-018-0735-8. Epub 2018 Jun 7.


The E3 ligase BRUTUS facilitates degradation of VOZ1/2 transcription factors.

Selote D, Matthiadis A, Gillikin JW, Sato MH, Long TA.

Plant Cell Environ. 2018 Oct;41(10):2463-2474. doi: 10.1111/pce.13363. Epub 2018 Jul 16.


Nutritional geometry and fitness consequences in Drosophila suzukii, the Spotted-Wing Drosophila.

Young Y, Buckiewicz N, Long TAF.

Ecol Evol. 2018 Feb 11;8(5):2842-2851. doi: 10.1002/ece3.3849. eCollection 2018 Mar.


Comparison of Laboratory-Developed Tests and FDA-Approved Assays for BRAF, EGFR, and KRAS Testing.

Kim AS, Bartley AN, Bridge JA, Kamel-Reid S, Lazar AJ, Lindeman NI, Long TA, Merker JD, Rai AJ, Rimm DL, Rothberg PG, Vasalos P, Moncur JT.

JAMA Oncol. 2018 Jun 1;4(6):838-841. doi: 10.1001/jamaoncol.2017.4021.


Phenotypic plasticity in female mate choice behavior is mediated by an interaction of direct and indirect genetic effects in Drosophila melanogaster.

Filice DCS, Long TAF.

Ecol Evol. 2017 Apr 9;7(10):3542-3551. doi: 10.1002/ece3.2954. eCollection 2017 May.


Toll-like receptor 2 gene polymorphisms in Chinese Holstein cattle and their associations with bovine tuberculosis.

Zhao Z, Xue Y, Hu Z, Zhou F, Ma B, Long T, Xue Q, Liu H.

Vet Immunol Immunopathol. 2017 Apr;186:51-54. doi: 10.1016/j.vetimm.2017.02.007. Epub 2017 Feb 28.


Occurrence of Pasteurella multocida among pigs with respiratory disease in China between 2011 and 2015.

Liu H, Zhao Z, Xi X, Xue Q, Long T, Xue Y.

Ir Vet J. 2017 Jan 10;70:2. doi: 10.1186/s13620-016-0080-7. eCollection 2017.


More than meets the eye: Emergent properties of transcription factors networks in Arabidopsis.

Muhammad D, Schmittling S, Williams C, Long TA.

Biochim Biophys Acta Gene Regul Mech. 2017 Jan;1860(1):64-74. doi: 10.1016/j.bbagrm.2016.07.017. Epub 2016 Jul 30. Review.


Further insight into BRUTUS domain composition and functionality.

Matthiadis A, Long TA.

Plant Signal Behav. 2016 Aug 2;11(8):e1204508. doi: 10.1080/15592324.2016.1204508.


An Examination of Incentive Strategies to Increase Participation in Outcomes Research for an Adolescent Inpatient Unit.

Ha C, Madan A, Long TA, Sharp C.

J Psychiatr Pract. 2016 May;22(3):250-6. doi: 10.1097/PRA.0000000000000146.


Genetic variation in male-induced harm in Drosophila melanogaster.

Filice DC, Long TA.

Biol Lett. 2016 Apr;12(4). pii: 20160105. doi: 10.1098/rsbl.2016.0105.


Are flies kind to kin? The role of intra- and inter-sexual relatedness in mediating reproductive conflict.

Martin ES, Long TA.

Proc Biol Sci. 2015 Dec 22;282(1821):20151991. doi: 10.1098/rspb.2015.1991.


Clustering and Differential Alignment Algorithm: Identification of Early Stage Regulators in the Arabidopsis thaliana Iron Deficiency Response.

Koryachko A, Matthiadis A, Muhammad D, Foret J, Brady SM, Ducoste JJ, Tuck J, Long TA, Williams C.

PLoS One. 2015 Aug 28;10(8):e0136591. doi: 10.1371/journal.pone.0136591. eCollection 2015.


Iron-binding E3 ligase mediates iron response in plants by targeting basic helix-loop-helix transcription factors.

Selote D, Samira R, Matthiadis A, Gillikin JW, Long TA.

Plant Physiol. 2015 Jan;167(1):273-86. doi: 10.1104/pp.114.250837. Epub 2014 Dec 1.


Longitudinal changes in peripapillary atrophy in the ocular hypertension treatment study: a case-control assessment.

Savatovsky E, Mwanza JC, Budenz DL, Feuer WJ, Vandenbroucke R, Schiffman JC, Anderson DR; Ocular Hypertension Treatment Study.

Ophthalmology. 2015 Jan;122(1):79-86. doi: 10.1016/j.ophtha.2014.07.033. Epub 2014 Sep 7.


Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.

Martínez-Trujillo M, Méndez-Bravo A, Ortiz-Castro R, Hernández-Madrigal F, Ibarra-Laclette E, Ruiz-Herrera LF, Long TA, Cervantes C, Herrera-Estrella L, López-Bucio J.

Plant Mol Biol. 2014 Sep;86(1-2):35-50. doi: 10.1007/s11103-014-0210-0. Epub 2014 Jun 14.


Hemiclonal analysis of interacting phenotypes in male and female Drosophila melanogaster.

Tennant HM, Sonser EE, Long TA.

BMC Evol Biol. 2014 May 3;14:95. doi: 10.1186/1471-2148-14-95.


Fixating on metals: new insights into the role of metals in nodulation and symbiotic nitrogen fixation.

González-Guerrero M, Matthiadis A, Sáez Á, Long TA.

Front Plant Sci. 2014 Feb 13;5:45. doi: 10.3389/fpls.2014.00045. eCollection 2014. Review.


Variation in male effects on female fecundity in Drosophila melanogaster.

Tennant HM, Sonser EE, Long TA.

J Evol Biol. 2014 Feb;27(2):449-54. doi: 10.1111/jeb.12305. Epub 2013 Dec 27.


A prospective, multi-institutional diagnostic trial to determine pathologist accuracy in estimation of percentage of malignant cells.

Viray H, Li K, Long TA, Vasalos P, Bridge JA, Jennings LJ, Halling KC, Hameed M, Rimm DL.

Arch Pathol Lab Med. 2013 Nov;137(11):1545-9. doi: 10.5858/arpa.2012-0561-CP.


A single amino acid alteration in PGR5 confers resistance to antimycin A in cyclic electron transport around PSI.

Sugimoto K, Okegawa Y, Tohri A, Long TA, Covert SF, Hisabori T, Shikanai T.

Plant Cell Physiol. 2013 Sep;54(9):1525-34. doi: 10.1093/pcp/pct098. Epub 2013 Jul 19.


Ironing out the issues: integrated approaches to understanding iron homeostasis in plants.

Samira R, Stallmann A, Massenburg LN, Long TA.

Plant Sci. 2013 Sep;210:250-9. doi: 10.1016/j.plantsci.2013.06.004. Epub 2013 Jun 15. Review.


The effects of selective history and environmental heterogeneity on inbreeding depression in experimental populations of Drosophila melanogaster.

Long TA, Rowe L, Agrawal AF.

Am Nat. 2013 Apr;181(4):532-44. doi: 10.1086/669675. Epub 2013 Mar 5.


Series length used during trend analysis affects sensitivity to changes in progression rate in the ocular hypertension treatment study.

Gardiner SK, Demirel S, De Moraes CG, Liebmann JM, Cioffi GA, Ritch R, Gordon MO, Kass MA; Ocular Hypertension Treatment Study Group.

Invest Ophthalmol Vis Sci. 2013 Feb 15;54(2):1252-9. doi: 10.1167/iovs.12-10218.


The incidence of primary antibiotic resistance of Helicobacter pylori in Vietnam.

Binh TT, Shiota S, Nguyen LT, Ho DD, Hoang HH, Ta L, Trinh DT, Fujioka T, Yamaoka Y.

J Clin Gastroenterol. 2013 Mar;47(3):233-8. doi: 10.1097/MCG.0b013e3182676e2b.


The effect of sexual selection on offspring fitness depends on the nature of genetic variation.

Long TA, Agrawal AF, Rowe L.

Curr Biol. 2012 Feb 7;22(3):204-8. doi: 10.1016/j.cub.2011.12.020. Epub 2012 Jan 5.


Many needles in a haystack: cell-type specific abiotic stress responses.

Long TA.

Curr Opin Plant Biol. 2011 Jun;14(3):325-31. doi: 10.1016/j.pbi.2011.04.005. Epub 2011 May 5. Review.


Helicobacter pylori infection and gastroduodenal diseases in Vietnam: a cross-sectional, hospital-based study.

Nguyen TL, Uchida T, Tsukamoto Y, Trinh DT, Ta L, Mai BH, Le SH, Thai KD, Ho DD, Hoang HH, Matsuhisa T, Okimoto T, Kodama M, Murakami K, Fujioka T, Yamaoka Y, Moriyama M.

BMC Gastroenterol. 2010 Sep 30;10:114. doi: 10.1186/1471-230X-10-114.


The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots.

Long TA, Tsukagoshi H, Busch W, Lahner B, Salt DE, Benfey PN.

Plant Cell. 2010 Jul;22(7):2219-36. doi: 10.1105/tpc.110.074096. Epub 2010 Jul 30.


Remating in Drosophila melanogaster: are indirect benefits condition dependent?

Long TA, Pischedda A, Rice WR.

Evolution. 2010 Sep;64(9):2767-74. doi: 10.1111/j.1558-5646.2010.00997.x.


The timing of mating influences reproductive success in Drosophila melanogaster: implications for sexual conflict.

Long TA, Pischedda A, Nichols RV, Rice WR.

J Evol Biol. 2010 May;23(5):1024-32. doi: 10.1111/j.1420-9101.2010.01973.x. Epub 2010 Mar 19.


A cost of sexual attractiveness to high-fitness females.

Long TA, Pischedda A, Stewart AD, Rice WR.

PLoS Biol. 2009 Dec;7(12):e1000254. doi: 10.1371/journal.pbio.1000254. Epub 2009 Dec 8.


Evaluation of the anti-East Asian CagA-specific antibody for CagA phenotyping.

Nguyen LT, Uchida T, Kuroda A, Tsukamoto Y, Trinh TD, Ta L, Mai HB, Ho DQ, Hoang HH, Vilaichone RK, Mahachai V, Matsuhisa T, Kudo Y, Okimoto T, Kodama M, Murakami K, Fujioka T, Yamaoka Y, Moriyama M.

Clin Vaccine Immunol. 2009 Nov;16(11):1687-92. doi: 10.1128/CVI.00200-09. Epub 2009 Sep 23.


Analysis of virulence factors of Helicobacter pylori isolated from a Vietnamese population.

Uchida T, Nguyen LT, Takayama A, Okimoto T, Kodama M, Murakami K, Matsuhisa T, Trinh TD, Ta L, Ho DQ, Hoang HH, Kishida T, Fujioka T, Moriyama M, Yamaoka Y.

BMC Microbiol. 2009 Aug 23;9:175. doi: 10.1186/1471-2180-9-175.


Evaluation of rapid urine test for the detection of Helicobacter pylori infection in the Vietnamese population.

Nguyen LT, Uchida T, Tsukamoto Y, Trinh TD, Ta L, Ho DQ, Matsuhisa T, Uchida M, Takayama A, Hijiya N, Okimoto T, Kodama M, Murakami K, Fujioka T, Moriyama M.

Dig Dis Sci. 2010 Jan;55(1):89-93. doi: 10.1007/s10620-009-0720-9. Epub 2009 Feb 25.


Estimating the heritability of female lifetime fecundity in a locally adapted Drosophila melanogaster population.

Long TA, Miller PM, Stewart AD, Rice WR.

J Evol Biol. 2009 Mar;22(3):637-43. doi: 10.1111/j.1420-9101.2008.01676.x. Epub 2009 Jan 29.


Potential confounds to an assay of cross-generational fitness benefits of mating and male seminal fluid.

Long TA, Stewart AD, Miller PM.

Biol Lett. 2009 Feb 23;5(1):26-7; author reply 28-9. doi: 10.1098/rsbl.2008.0325. No abstract available.


Conserved role of proton gradient regulation 5 in the regulation of PSI cyclic electron transport.

Long TA, Okegawa Y, Shikanai T, Schmidt GW, Covert SF.

Planta. 2008 Nov;228(6):907-18. doi: 10.1007/s00425-008-0789-y. Epub 2008 Jul 29.


Systems approaches to identifying gene regulatory networks in plants.

Long TA, Brady SM, Benfey PN.

Annu Rev Cell Dev Biol. 2008;24:81-103. doi: 10.1146/annurev.cellbio.24.110707.175408. Review.


Cell identity mediates the response of Arabidopsis roots to abiotic stress.

Dinneny JR, Long TA, Wang JY, Jung JW, Mace D, Pointer S, Barron C, Brady SM, Schiefelbein J, Benfey PN.

Science. 2008 May 16;320(5878):942-5. doi: 10.1126/science.1153795. Epub 2008 Apr 24.

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