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Items: 45

1.

Draft Genome Sequence of Candida auris Strain LOM, a Human Clinical Isolate from Greater Metropolitan Houston, Texas.

Long SW, Olsen RJ, Nguyen HAT, Ojeda Saavedra M, Musser JM.

Microbiol Resour Announc. 2019 Jun 20;8(25). pii: e00532-19. doi: 10.1128/MRA.00532-19.

2.

Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis.

Kachroo P, Eraso JM, Beres SB, Olsen RJ, Zhu L, Nasser W, Bernard PE, Cantu CC, Saavedra MO, Arredondo MJ, Strope B, Do H, Kumaraswami M, Vuopio J, Gröndahl-Yli-Hannuksela K, Kristinsson KG, Gottfredsson M, Pesonen M, Pensar J, Davenport ER, Clark AG, Corander J, Caugant DA, Gaini S, Magnussen MD, Kubiak SL, Nguyen HAT, Long SW, Porter AR, DeLeo FR, Musser JM.

Nat Genet. 2019 Mar;51(3):548-559. doi: 10.1038/s41588-018-0343-1. Epub 2019 Feb 18.

PMID:
30778225
3.

Real-time Communication With Health Care Providers Through an Online Respiratory Pathogen Laboratory Report.

Christensen PA, Olsen RJ, Perez KK, Cernoch PL, Long SW.

Open Forum Infect Dis. 2018 Nov 30;5(12):ofy322. doi: 10.1093/ofid/ofy322. eCollection 2018 Dec.

4.

Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal Salmonella.

Nguyen M, Long SW, McDermott PF, Olsen RJ, Olson R, Stevens RL, Tyson GH, Zhao S, Davis JJ.

J Clin Microbiol. 2019 Jan 30;57(2). pii: e01260-18. doi: 10.1128/JCM.01260-18. Print 2019 Feb.

PMID:
30333126
5.

RocA Has Serotype-Specific Gene Regulatory and Pathogenesis Activities in Serotype M28 Group A Streptococcus.

Bernard PE, Kachroo P, Zhu L, Beres SB, Eraso JM, Kajani Z, Long SW, Musser JM, Olsen RJ.

Infect Immun. 2018 Oct 25;86(11). pii: e00467-18. doi: 10.1128/IAI.00467-18. Print 2018 Nov.

6.

Chlorhexidine bathing and Clostridium difficile infection in a surgical intensive care unit.

Bui LN, Swan JT, Shirkey BA, Olsen RJ, Long SW, Graviss EA.

J Surg Res. 2018 Aug;228:107-111. doi: 10.1016/j.jss.2018.02.063. Epub 2018 Apr 3.

PMID:
29907198
7.

Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae.

Nguyen M, Brettin T, Long SW, Musser JM, Olsen RJ, Olson R, Shukla M, Stevens RL, Xia F, Yoo H, Davis JJ.

Sci Rep. 2018 Jan 11;8(1):421. doi: 10.1038/s41598-017-18972-w.

8.

Houston Methodist Variant Viewer: An Application to Support Clinical Laboratory Interpretation of Next-generation Sequencing Data for Cancer.

Christensen PA, Ni Y, Bao F, Hendrickson HL, Greenwood M, Thomas JS, Long SW, Olsen RJ.

J Pathol Inform. 2017 Nov 23;8:44. doi: 10.4103/jpi.jpi_48_17. eCollection 2017.

9.

Whole-Genome Sequencing of a Human Clinical Isolate of emm28 Streptococcus pyogenes Causing Necrotizing Fasciitis Acquired Contemporaneously with Hurricane Harvey.

Long SW, Kachroo P, Musser JM, Olsen RJ.

Genome Announc. 2017 Nov 9;5(45). pii: e01269-17. doi: 10.1128/genomeA.01269-17.

10.

Whole-Genome Sequencing of a Human Clinical Isolate of the Novel Species Klebsiella quasivariicola sp. nov.

Long SW, Linson SE, Ojeda Saavedra M, Cantu C, Davis JJ, Brettin T, Olsen RJ.

Genome Announc. 2017 Oct 19;5(42). pii: e01057-17. doi: 10.1128/genomeA.01057-17.

11.

Whole-Genome Sequencing of Human Clinical Klebsiella pneumoniae Isolates Reveals Misidentification and Misunderstandings of Klebsiella pneumoniae, Klebsiella variicola, and Klebsiella quasipneumoniae.

Long SW, Linson SE, Ojeda Saavedra M, Cantu C, Davis JJ, Brettin T, Olsen RJ.

mSphere. 2017 Aug 2;2(4). pii: e00290-17. doi: 10.1128/mSphereDirect.00290-17. eCollection 2017 Jul-Aug.

12.

Population Genomic Analysis of 1,777 Extended-Spectrum Beta-Lactamase-Producing Klebsiella pneumoniae Isolates, Houston, Texas: Unexpected Abundance of Clonal Group 307.

Long SW, Olsen RJ, Eagar TN, Beres SB, Zhao P, Davis JJ, Brettin T, Xia F, Musser JM.

MBio. 2017 May 16;8(3). pii: e00489-17. doi: 10.1128/mBio.00489-17.

13.

RecutClub.com: An Open Source, Whole Slide Image-based Pathology Education System.

Christensen PA, Lee NE, Thrall MJ, Powell SZ, Chevez-Barrios P, Long SW.

J Pathol Inform. 2017 Mar 10;8:10. doi: 10.4103/jpi.jpi_72_16. eCollection 2017.

14.

The majority of 9,729 group A streptococcus strains causing disease secrete SpeB cysteine protease: pathogenesis implications.

Olsen RJ, Raghuram A, Cantu C, Hartman MH, Jimenez FE, Lee S, Ngo A, Rice KA, Saddington D, Spillman H, Valson C, Flores AR, Beres SB, Long SW, Nasser W, Musser JM.

Infect Immun. 2015 Dec;83(12):4750-8. doi: 10.1128/IAI.00989-15. Epub 2015 Sep 28.

15.

Comparative whole genome sequencing of community-associated methicillin-resistant Staphylococcus aureus sequence type 8 from primary care clinics in a Texas community.

Lee GC, Long SW, Musser JM, Beres SB, Olsen RJ, Dallas SD, Nunez YO, Frei CR.

Pharmacotherapy. 2015 Feb;35(2):220-8. doi: 10.1002/phar.1536. Epub 2015 Feb 3.

PMID:
25644979
16.

Absence of patient-to-patient intrahospital transmission of Staphylococcus aureus as determined by whole-genome sequencing.

Long SW, Beres SB, Olsen RJ, Musser JM.

MBio. 2014 Oct 7;5(5):e01692-14. doi: 10.1128/mBio.01692-14.

17.

Clinical laboratory response to a mock outbreak of invasive bacterial infections: a preparedness study.

Olsen RJ, Fittipaldi N, Kachroo P, Sanson MA, Long SW, Como-Sabetti KJ, Valson C, Cantu C, Lynfield R, Van Beneden C, Beres SB, Musser JM.

J Clin Microbiol. 2014 Dec;52(12):4210-6. doi: 10.1128/JCM.02164-14. Epub 2014 Sep 24.

18.

PBP2a mutations causing high-level Ceftaroline resistance in clinical methicillin-resistant Staphylococcus aureus isolates.

Long SW, Olsen RJ, Mehta SC, Palzkill T, Cernoch PL, Perez KK, Musick WL, Rosato AE, Musser JM.

Antimicrob Agents Chemother. 2014 Nov;58(11):6668-74. doi: 10.1128/AAC.03622-14. Epub 2014 Aug 25.

19.

Improving positive blood culture removal time significantly decreases total processing time.

Salazar E, Divatia M, Cernoch PL, Olsen RJ, Long SW, Land GA, Davis JR, Musser JM.

Arch Pathol Lab Med. 2015 Feb;139(2):199-203. doi: 10.5858/arpa.2013-0681-OA. Epub 2014 May 7.

PMID:
24806519
20.

Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences.

Nasser W, Beres SB, Olsen RJ, Dean MA, Rice KA, Long SW, Kristinsson KG, Gottfredsson M, Vuopio J, Raisanen K, Caugant DA, Steinbakk M, Low DE, McGeer A, Darenberg J, Henriques-Normark B, Van Beneden CA, Hoffmann S, Musser JM.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):E1768-76. doi: 10.1073/pnas.1403138111. Epub 2014 Apr 14.

21.

Identification of point mutations in clinical Staphylococcus aureus strains that produce small-colony variants auxotrophic for menadione.

Dean MA, Olsen RJ, Long SW, Rosato AE, Musser JM.

Infect Immun. 2014 Apr;82(4):1600-5. doi: 10.1128/IAI.01487-13. Epub 2014 Jan 22.

22.

A genomic day in the life of a clinical microbiology laboratory.

Long SW, Williams D, Valson C, Cantu CC, Cernoch P, Musser JM, Olsen RJ.

J Clin Microbiol. 2013 Apr;51(4):1272-7. doi: 10.1128/JCM.03237-12. Epub 2013 Jan 23.

23.

Strategy for rapid identification and antibiotic susceptibility testing of gram-negative bacteria directly recovered from positive blood cultures using the Bruker MALDI Biotyper and the BD Phoenix system.

Wimmer JL, Long SW, Cernoch P, Land GA, Davis JR, Musser JM, Olsen RJ.

J Clin Microbiol. 2012 Jul;50(7):2452-4. doi: 10.1128/JCM.00409-12. Epub 2012 Apr 18.

24.

Bacterial genomics in infectious disease and the clinical pathology laboratory.

Olsen RJ, Long SW, Musser JM.

Arch Pathol Lab Med. 2012 Nov;136(11):1414-22. doi: 10.5858/arpa.2012-0025-RA. Epub 2012 Mar 22. Review.

PMID:
22439809
25.

Rapidly progressive, fatal, inhalation anthrax-like infection in a human: case report, pathogen genome sequencing, pathology, and coordinated response.

Wright AM, Beres SB, Consamus EN, Long SW, Flores AR, Barrios R, Richter GS, Oh SY, Garufi G, Maier H, Drews AL, Stockbauer KE, Cernoch P, Schneewind O, Olsen RJ, Musser JM.

Arch Pathol Lab Med. 2011 Nov;135(11):1447-59. doi: 10.5858/2011-0362-SAIR.1. Epub 2011 Aug 9.

PMID:
21882964
26.

Facioscapulohumeral muscular dystrophy region gene 1 is a dynamic RNA-associated and actin-bundling protein.

Sun CY, van Koningsbruggen S, Long SW, Straasheijm K, Klooster R, Jones TI, Bellini M, Levesque L, Brieher WM, van der Maarel SM, Jones PL.

J Mol Biol. 2011 Aug 12;411(2):397-416. doi: 10.1016/j.jmb.2011.06.014. Epub 2011 Jun 15.

27.

Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis.

Bogdanovic O, Long SW, van Heeringen SJ, Brinkman AB, Gómez-Skarmeta JL, Stunnenberg HG, Jones PL, Veenstra GJ.

Genome Res. 2011 Aug;21(8):1313-27. doi: 10.1101/gr.114843.110. Epub 2011 Jun 2.

28.

A brain-derived MeCP2 complex supports a role for MeCP2 in RNA processing.

Long SW, Ooi JY, Yau PM, Jones PL.

Biosci Rep. 2011 Oct;31(5):333-43. doi: 10.1042/BSR20100124.

29.

Facioscapulohumeral muscular dystrophy (FSHD) region gene 1 (FRG1) is a dynamic nuclear and sarcomeric protein.

Hanel ML, Sun CY, Jones TI, Long SW, Zanotti S, Milner D, Jones PL.

Differentiation. 2011 Feb;81(2):107-18. doi: 10.1016/j.diff.2010.09.185.

30.

Testing the effects of FSHD candidate gene expression in vertebrate muscle development.

Wuebbles RD, Long SW, Hanel ML, Jones PL.

Int J Clin Exp Pathol. 2010 Mar 28;3(4):386-400.

31.

Stem cell biology should be taught in high schools.

Salli U, Long SW, Carlsen WS, Vrana KE.

CBE Life Sci Educ. 2007 Winter;6(4):283-4. No abstract available.

32.

Development and validation of the Rapid Estimate of Adolescent Literacy in Medicine (REALM-Teen): a tool to screen adolescents for below-grade reading in health care settings.

Davis TC, Wolf MS, Arnold CL, Byrd RS, Long SW, Springer T, Kennen E, Bocchini JA.

Pediatrics. 2006 Dec;118(6):e1707-14.

PMID:
17142495
33.

A preliminary investigation of Ehrlichia species in ticks, humans, dogs, and capybaras from Brazil.

Labruna MB, McBride JW, Camargo LM, Aguiar DM, Yabsley MJ, Davidson WR, Stromdahl EY, Williamson PC, Stich RW, Long SW, Camargo EP, Walker DH.

Vet Parasitol. 2007 Jan 31;143(2):189-95. Epub 2006 Sep 7.

PMID:
16962245
34.

Overcoming barriers to the transformation of the genus Ehrlichia.

Long SW, Whitworth TJ, Walker DH, Yu XJ.

Ann N Y Acad Sci. 2005 Dec;1063:403-10.

PMID:
16481548
35.

Ehrlichia prevalence in Amblyomma americanum, Central Texas.

Long SW, Pound JM, Yu XJ.

Emerg Infect Dis. 2004 Jul;10(7):1342-3. No abstract available.

37.
38.

Experimental Ehrlichia chaffeensis infection in beagles.

Zhang XF, Zhang JZ, Long SW, Ruble RP, Yu XJ.

J Med Microbiol. 2003 Nov;52(Pt 11):1021-6.

PMID:
14532348
39.

Antigenic variation of Ehrlichia chaffeensis resulting from differential expression of the 28-kilodalton protein gene family.

Long SW, Zhang XF, Qi H, Standaert S, Walker DH, Yu XJ.

Infect Immun. 2002 Apr;70(4):1824-31.

40.

The problem of college drinking: insights from a developmental perspective.

Schulenberg J, Maggs JL, Long SW, Sher KJ, Gotham HJ, Baer JS, Kivlahan DR, Marlatt GA, Zucker RA.

Alcohol Clin Exp Res. 2001 Mar;25(3):473-7.

41.

Rapid estimate of adult literacy in medicine: a shortened screening instrument.

Davis TC, Long SW, Jackson RH, Mayeaux EJ, George RB, Murphy PW, Crouch MA.

Fam Med. 1993 Jun;25(6):391-5.

PMID:
8349060
42.

Reading ability in patients in substance misuse treatment centers.

Davis TC, Jackson RH, George RB, Long SW, Talley D, Murphy PW, Mayeaux EJ, Truong T.

Int J Addict. 1993 May;28(6):571-82.

PMID:
8098019
43.

Rapid assessment of literacy levels of adult primary care patients.

Davis TC, Crouch MA, Long SW, Jackson RH, Bates P, George RB, Bairnsfather LE.

Fam Med. 1991 Aug;23(6):433-5.

PMID:
1936717
44.

Introduction to the Kaufman Assessment Battery for Children (K-ABC) for pediatric neuroclinicians.

Kaufman AS, O'Neal MR, Avant AH, Long SW.

J Child Neurol. 1987 Jan;2(1):3-16.

PMID:
3624826
45.

Topical review of the WISC-R for pediatric neuroclinicians.

Kaufman AS, Long SW, O'Neal MR.

J Child Neurol. 1986 Apr;1(2):89-98.

PMID:
3598123

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