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Items: 1 to 50 of 78

1.

Venom Composition Does Not Vary Greatly Between Different Nematocyst Types Isolated from the Primary Tentacles of Olindias sambaquiensis (Cnidaria: Hydrozoa).

Doonan LB, Lynham S, Quinlan C, Ibiji SC, Winter CE, Padilla G, Jaimes-Becerra A, Morandini AC, Marques AC, Long PF.

Biol Bull. 2019 Aug;237(1):26-35. doi: 10.1086/705113. Epub 2019 Aug 7.

PMID:
31441701
2.

Chemical Responses to the Biotic and Abiotic Environment by Early Diverging Metazoans Revealed in the Post-Genomic Age.

Okamura B, Long PF, Mydlarz LD.

Integr Comp Biol. 2019 Oct 1;59(4):731-738. doi: 10.1093/icb/icz125.

PMID:
31353399
3.

"Beyond Primary Sequence"-Proteomic Data Reveal Complex Toxins in Cnidarian Venoms.

Jaimes-Becerra A, Gacesa R, Doonan LB, Hartigan A, Marques AC, Okamura B, Long PF.

Integr Comp Biol. 2019 Oct 1;59(4):777-785. doi: 10.1093/icb/icz106.

PMID:
31225595
4.

Stress-Free Evolution: The Nrf-Coordinated Oxidative Stress Response in Early Diverging Metazoans.

Doonan LB, Hartigan A, Okamura B, Long PF.

Integr Comp Biol. 2019 Oct 1;59(4):799-810. doi: 10.1093/icb/icz055.

PMID:
31120488
5.

Interferences that impact measuring optimal L-asparaginase activity and consequent errors interpreting these data.

de Freitas MM, Souza PM, Cruvinel K, Barros T, Santos SN, Long PF, Pessoa A, Magalhães PO.

Appl Microbiol Biotechnol. 2019 Jul;103(13):5161-5166. doi: 10.1007/s00253-019-09890-0. Epub 2019 May 18. Review.

PMID:
31104099
6.

Identifying quality of life indicators to improve outpatient pharmacy services for prostate cancer patients: a comparison between Brazilian and British experiences.

Patel H, Aguiar PM, Pessoa A Jr, Storpirtis S, Long PF.

Int Braz J Urol. 2019 May-Jun;45(3):435-448. doi: 10.1590/S1677-5538.IBJU.2018.0553.

7.

Production of Polyhydroxyalkanoates Copolymers by Recombinant Pseudomonas in Plasmid- and Antibiotic-Free Cultures.

Oliveira-Filho ER, Guamán LP, Mendonça TT, Long PF, Taciro MK, Gomez JGC, Silva LF.

J Mol Microbiol Biotechnol. 2018;28(5):225-235. doi: 10.1159/000495752. Epub 2019 Feb 19.

PMID:
30783060
8.

Bioprospecting for Genes Encoding Hydrocarbon-Degrading Enzymes from Metagenomic Samples Isolated from 
Northern Adriatic Sea Sediments.

Gacesa R, Baranasic D, Starcevic A, Diminic J, Korlević M, Najdek M, Blažina M, Oršolić D, Kolesarić D, Long PF, Cullum J, Hranueli D, Orlic S, Zucko J.

Food Technol Biotechnol. 2018 Jun;56(2):270-277. doi: 10.17113/ftb.56.02.18.5393.

9.

The mycosporine-like amino acids porphyra-334 and shinorine are antioxidants and direct antagonists of Keap1-Nrf2 binding.

Gacesa R, Lawrence KP, Georgakopoulos ND, Yabe K, Dunlap WC, Barlow DJ, Wells G, Young AR, Long PF.

Biochimie. 2018 Nov;154:35-44. doi: 10.1016/j.biochi.2018.07.020. Epub 2018 Jul 30.

10.

Molecular photoprotection of human keratinocytes in vitro by the naturally occurring mycosporine-like amino acid palythine.

Lawrence KP, Gacesa R, Long PF, Young AR.

Br J Dermatol. 2018 Jun;178(6):1353-1363. doi: 10.1111/bjd.16125. Epub 2018 Mar 25.

11.

MEGGASENSE - The Metagenome/Genome Annotated Sequence Natural Language Search Engine: A Platform for 
the Construction of Sequence Data Warehouses.

Gacesa R, Zucko J, Petursdottir SK, Gudmundsdottir EE, Fridjonsson OH, Diminic J, Long PF, Cullum J, Hranueli D, Hreggvidsson GO, Starcevic A.

Food Technol Biotechnol. 2017 Jun;55(2):251-257. doi: 10.17113/ftb.55.02.17.4749.

12.

Comparative proteomics reveals recruitment patterns of some protein families in the venoms of Cnidaria.

Jaimes-Becerra A, Chung R, Morandini AC, Weston AJ, Padilla G, Gacesa R, Ward M, Long PF, Marques AC.

Toxicon. 2017 Oct;137:19-26. doi: 10.1016/j.toxicon.2017.07.012. Epub 2017 Jul 13.

13.

Mycosporine-Like Amino Acids for Skin Photoprotection.

Lawrence KP, Long PF, Young AR.

Curr Med Chem. 2018;25(40):5512-5527. doi: 10.2174/0929867324666170529124237. Review.

14.

Rising levels of atmospheric oxygen and evolution of Nrf2.

Gacesa R, Dunlap WC, Barlow DJ, Laskowski RA, Long PF.

Sci Rep. 2016 Jun 14;6:27740. doi: 10.1038/srep27740.

15.

Characterising the enzymatic profile of crude tentacle extracts from the South Atlantic jellyfish Olindias sambaquiensis (Cnidaria: Hydrozoa).

Knittel PS, Long PF, Brammall L, Marques AC, Almeida MT, Padilla G, Moura-da-Silva AM.

Toxicon. 2016 Sep 1;119:1-7. doi: 10.1016/j.toxicon.2016.04.048. Epub 2016 May 8.

PMID:
27169682
16.

Not too little, not too much: problems of selecting oral antibiotic dose for children.

Bielicki JA, Barker CI, Saxena S, Wong IC, Long PF, Sharland M.

BMJ. 2015 Nov 3;351:h5447. doi: 10.1136/bmj.h5447. No abstract available.

PMID:
26537515
17.

Gene duplications are extensive and contribute significantly to the toxic proteome of nematocysts isolated from Acropora digitifera (Cnidaria: Anthozoa: Scleractinia).

Gacesa R, Chung R, Dunn SR, Weston AJ, Jaimes-Becerra A, Marques AC, Morandini AC, Hranueli D, Starcevic A, Ward M, Long PF.

BMC Genomics. 2015 Oct 13;16:774. doi: 10.1186/s12864-015-1976-4.

18.

Genome Sequence of Streptomyces caatingaensis CMAA 1322, a New Abiotic Stress-Tolerant Actinomycete Isolated from Dried Lake Bed Sediment in the Brazilian Caatinga Biome.

Santos SN, Gacesa R, Taketani RG, Long PF, Melo IS.

Genome Announc. 2015 Sep 10;3(5). pii: e01020-15. doi: 10.1128/genomeA.01020-15.

19.

Bioinformatics analyses provide insight into distant homology of the Keap1-Nrf2 pathway.

Gacesa R, Dunlap WC, Long PF.

Free Radic Biol Med. 2015 Nov;88(Pt B):373-380. doi: 10.1016/j.freeradbiomed.2015.06.015. Epub 2015 Jun 25.

PMID:
26117326
20.

Reported rates of diarrhea following oral penicillin therapy in pediatric clinical trials.

Kuehn J, Ismael Z, Long PF, Barker CI, Sharland M.

J Pediatr Pharmacol Ther. 2015 Mar-Apr;20(2):90-104. doi: 10.5863/1551-6776-20.2.90. Review.

21.

Bacterial diversity of polluted surface sediments in the northern Adriatic Sea.

Korlević M, Zucko J, Dragić MN, Blažina M, Pustijanac E, Zeljko TV, Gacesa R, Baranasic D, Starcevic A, Diminic J, Long PF, Cullum J, Hranueli D, Orlić S.

Syst Appl Microbiol. 2015 May;38(3):189-97. doi: 10.1016/j.syapm.2015.03.001. Epub 2015 Mar 23.

PMID:
25857844
22.

Combinations of long peptide sequence blocks can be used to describe toxin diversification in venomous animals.

Starcevic A, Moura-da-Silva AM, Cullum J, Hranueli D, Long PF.

Toxicon. 2015 Mar;95:84-92. doi: 10.1016/j.toxicon.2015.01.005. Epub 2015 Jan 14.

PMID:
25595734
23.

Proteomics links the redox state to calcium signaling during bleaching of the scleractinian coral Acropora microphthalma on exposure to high solar irradiance and thermal stress.

Weston AJ, Dunlap WC, Beltran VH, Starcevic A, Hranueli D, Ward M, Long PF.

Mol Cell Proteomics. 2015 Mar;14(3):585-95. doi: 10.1074/mcp.M114.043125. Epub 2015 Jan 5.

24.

O-Methyltransferase is shared between the pentose phosphate and shikimate pathways and is essential for mycosporine-like amino acid biosynthesis in Anabaena variabilis ATCC 29413.

Pope MA, Spence E, Seralvo V, Gacesa R, Heidelberger S, Weston AJ, Dunlap WC, Shick JM, Long PF.

Chembiochem. 2015 Jan 19;16(2):320-7. doi: 10.1002/cbic.201402516. Epub 2014 Dec 8.

PMID:
25487723
25.

Genome Sequences of the Oxytetracycline Production Strain Streptomyces rimosus R6-500 and Two Mutants with Chromosomal Rearrangements.

Baranasic D, Zucko J, Nair M, Pain A, Long PF, Hranueli D, Cullum J, Starcevic A.

Genome Announc. 2014 Jul 17;2(4). pii: e00517-14. doi: 10.1128/genomeA.00517-14.

26.

Genome Sequence of Streptomyces olindensis DAUFPE 5622, Producer of the Antitumoral Anthracycline Cosmomycin D.

Rojas JD, Starcevic A, Baranas̆ić D, Ferreira-Torres MA, Contreras CA, Garrido LM, Araújo WL, de Souza RF, Zucko J, Hranueli D, Long PF, Cullum J, Padilla G.

Genome Announc. 2014 Jun 26;2(3). pii: e00541-14. doi: 10.1128/genomeA.00541-14.

27.

Oral penicillin prescribing for children in the UK: a comparison with BNF for Children age-band recommendations.

Saxena S, Ismael Z, Murray ML, Barker C, Wong IC, Sharland M, Long PF.

Br J Gen Pract. 2014 Apr;64(621):e217-22. doi: 10.3399/bjgp14X677842.

28.

Predicting substrate specificity of adenylation domains of nonribosomal peptide synthetases and other protein properties by latent semantic indexing.

Baranašić D, Zucko J, Diminic J, Gacesa R, Long PF, Cullum J, Hranueli D, Starcevic A.

J Ind Microbiol Biotechnol. 2014 Feb;41(2):461-7. doi: 10.1007/s10295-013-1322-2. Epub 2013 Oct 9.

PMID:
24104398
29.

Evolutionary concepts in natural products discovery: what actinomycetes have taught us.

Diminic J, Starcevic A, Lisfi M, Baranasic D, Gacesa R, Hranueli D, Long PF, Cullum J, Zucko J.

J Ind Microbiol Biotechnol. 2014 Feb;41(2):211-7. doi: 10.1007/s10295-013-1337-8. Epub 2013 Sep 24. Review.

PMID:
24061567
30.

KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome.

Dunlap WC, Starcevic A, Baranasic D, Diminic J, Zucko J, Gacesa R, van Oppen MJ, Hranueli D, Cullum J, Long PF.

BMC Genomics. 2013 Jul 26;14:509. doi: 10.1186/1471-2164-14-509.

31.

2-epi-5-epi-Valiolone synthase activity is essential for maintaining phycobilisome composition in the cyanobacterium Anabaena variabilis ATCC 29413 when grown in the presence of a carbon source.

Spence E, Bryan SJ, Lisfi M, Cullum J, Dunlap WC, Shick JM, Mullineaux CW, Long PF.

Photosynth Res. 2013 Sep;116(1):33-43. doi: 10.1007/s11120-013-9886-2. Epub 2013 Jul 16.

PMID:
23857509
32.

Diversification of animal venom peptides-were jellyfish amongst the first combinatorial chemists?

Starcevic A, Long PF.

Chembiochem. 2013 Aug 19;14(12):1407-9. doi: 10.1002/cbic.201300305. Epub 2013 Jul 2.

PMID:
23821453
33.

Proteomic characterisation of toxins isolated from nematocysts of the South Atlantic jellyfish Olindias sambaquiensis.

Weston AJ, Chung R, Dunlap WC, Morandini AC, Marques AC, Moura-da-Silva AM, Ward M, Padilla G, da Silva LF, Andreakis N, Long PF.

Toxicon. 2013 Sep;71:11-7. doi: 10.1016/j.toxicon.2013.05.002. Epub 2013 May 18.

PMID:
23688393
34.

Databases of the thiotemplate modular systems (CSDB) and their in silico recombinants (r-CSDB).

Diminic J, Zucko J, Ruzic IT, Gacesa R, Hranueli D, Long PF, Cullum J, Starcevic A.

J Ind Microbiol Biotechnol. 2013 Jun;40(6):653-9. doi: 10.1007/s10295-013-1252-z. Epub 2013 Mar 16.

PMID:
23504028
35.

Horizontal gene transfer and gene conversion drive evolution of modular polyketide synthases.

Zucko J, Long PF, Hranueli D, Cullum J.

J Ind Microbiol Biotechnol. 2012 Oct;39(10):1541-7. Epub 2012 May 30.

PMID:
22644383
36.

A profile of an endosymbiont-enriched fraction of the coral Stylophora pistillata reveals proteins relevant to microbial-host interactions.

Weston AJ, Dunlap WC, Shick JM, Klueter A, Iglic K, Vukelic A, Starcevic A, Ward M, Wells ML, Trick CG, Long PF.

Mol Cell Proteomics. 2012 Jun;11(6):M111.015487. doi: 10.1074/mcp.M111.015487. Epub 2012 Feb 20.

37.

Redundant pathways of sunscreen biosynthesis in a cyanobacterium.

Spence E, Dunlap WC, Shick JM, Long PF.

Chembiochem. 2012 Mar 5;13(4):531-3. doi: 10.1002/cbic.201100737. Epub 2012 Jan 25. Erratum in: Chembiochem. 2012 Mar 5;13(4):497.

PMID:
22278966
38.

Dosing of oral penicillins in children: is big child=half an adult, small child=half a big child, baby=half a small child still the best we can do?

Ahmed U, Spyridis N, Wong IC, Sharland M, Long PF; improving Children’s Antibiotic Prescribing UK Research Network.

BMJ. 2011 Dec 15;343:d7803. doi: 10.1136/bmj.d7803. No abstract available.

PMID:
22174326
39.

Recombinatorial biosynthesis of polyketides.

Starcevic A, Wolf K, Diminic J, Zucko J, Ruzic IT, Long PF, Hranueli D, Cullum J.

J Ind Microbiol Biotechnol. 2012 Mar;39(3):503-11. doi: 10.1007/s10295-011-1049-x. Epub 2011 Nov 1.

PMID:
22042517
40.

A novel docking domain interface model predicting recombination between homoeologous modular biosynthetic gene clusters.

Starcevic A, Diminic J, Zucko J, Elbekali M, Schlosser T, Lisfi M, Vukelic A, Long PF, Hranueli D, Cullum J.

J Ind Microbiol Biotechnol. 2011 Sep;38(9):1295-304. doi: 10.1007/s10295-010-0909-0. Epub 2010 Nov 24.

PMID:
21107638
41.

Gene expression in the scleractinian Acropora microphthalma exposed to high solar irradiance reveals elements of photoprotection and coral bleaching.

Starcevic A, Dunlap WC, Cullum J, Shick JM, Hranueli D, Long PF.

PLoS One. 2010 Nov 12;5(11):e13975. doi: 10.1371/journal.pone.0013975.

42.

Evolutionary dynamics of modular polyketide synthases, with implications for protein design and engineering.

Zucko J, Cullum J, Hranueli D, Long PF.

J Antibiot (Tokyo). 2011 Jan;64(1):89-92. doi: 10.1038/ja.2010.141. Epub 2010 Nov 24.

PMID:
21102600
43.

Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria.

Zucko J, Dunlap WC, Shick JM, Cullum J, Cercelet F, Amin B, Hammen L, Lau T, Williams J, Hranueli D, Long PF.

BMC Genomics. 2010 Nov 11;11:628. doi: 10.1186/1471-2164-11-628.

44.

Clustering of protein domains for functional and evolutionary studies.

Goldstein P, Zucko J, Vujaklija D, Krisko A, Hranueli D, Long PF, Etchebest C, Basrak B, Cullum J.

BMC Bioinformatics. 2009 Oct 15;10:335. doi: 10.1186/1471-2105-10-335.

45.

Effect of antibiotics for otitis media on mastoiditis in children: a retrospective cohort study using the United kingdom general practice research database.

Thompson PL, Gilbert RE, Long PF, Saxena S, Sharland M, Wong IC.

Pediatrics. 2009 Feb;123(2):424-30. doi: 10.1542/peds.2007-3349.

PMID:
19171605
46.

Changes in clinical indications for community antibiotic prescribing for children in the UK from 1996 to 2006: will the new NICE prescribing guidance on upper respiratory tract infections just be ignored?

Thompson PL, Spyridis N, Sharland M, Gilbert RE, Saxena S, Long PF, Johnson AP, Wong IC.

Arch Dis Child. 2009 May;94(5):337-40. doi: 10.1136/adc.2008.147579. Epub 2008 Dec 9.

PMID:
19066174
47.

The SGNH-hydrolase of Streptomyces coelicolor has (aryl)esterase and a true lipase activity.

Bielen A, Cetković H, Long PF, Schwab H, Abramić M, Vujaklija D.

Biochimie. 2009 Mar;91(3):390-400. doi: 10.1016/j.biochi.2008.10.018. Epub 2008 Nov 14.

PMID:
19041687
48.

Proposed arrangement of proteins forming a bacterial type II polyketide synthase.

Castaldo G, Zucko J, Heidelberger S, Vujaklija D, Hranueli D, Cullum J, Wattana-Amorn P, Crump MP, Crosby J, Long PF.

Chem Biol. 2008 Nov 24;15(11):1156-65. doi: 10.1016/j.chembiol.2008.09.010.

49.

ClustScan: an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures.

Starcevic A, Zucko J, Simunkovic J, Long PF, Cullum J, Hranueli D.

Nucleic Acids Res. 2008 Dec;36(21):6882-92. doi: 10.1093/nar/gkn685. Epub 2008 Oct 31.

50.

Marine metabolites and metal ion chelation: intact recovery and identification of an iron(II) complex in the extract of the ascidian Eudistoma gilboviride.

Wright SH, Raab A, Tabudravu JN, Feldmann J, Long PF, Battershill CN, Dunlap WC, Milne BF, Jaspars M.

Angew Chem Int Ed Engl. 2008;47(42):8090-2. doi: 10.1002/anie.200802060. No abstract available.

PMID:
18792906

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