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A Systematic Approach to Identify and Characterize the Effectiveness and Safety of Novel Probiotic Strains to Control Foodborne Pathogens.

Ayala DI, Cook PW, Franco JG, Bugarel M, Kottapalli KR, Loneragan GH, Brashears MM, Nightingale KK.

Front Microbiol. 2019 May 17;10:1108. doi: 10.3389/fmicb.2019.01108. eCollection 2019.


Complete Genome Sequences of Four Salmonella enterica Strains (Including Those of Serotypes Montevideo, Mbandaka, and Lubbock) Isolated from Peripheral Lymph Nodes of Healthy Cattle.

Bugarel M, Cook PW, den Bakker HC, Harhay D, Nightingale KK, Loneragan GH.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01450-18. doi: 10.1128/MRA.01450-18. eCollection 2019 Jan.


Complete Genome Sequence of a Salmonella enterica subsp. enterica Serovar Fresno Isolate Recovered from a Bovine Lymph Node.

Haley BJ, Smith TPL, Harhay GP, Loneragan GH, Webb HE, Bugarel M, Kim SW, Van Kessel JAS, Harhay DM.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01338-18. doi: 10.1128/MRA.01338-18. eCollection 2019 Jan.


Complete Closed Genome Sequences of Three Salmonella enterica subsp. enterica Serovar Dublin Strains Isolated from Cattle at Harvest.

Harhay DM, Smith TPL, Harhay GP, Loneragan GH, Webb HE, Bugarel M, Haley BJ, Kim SW, Van Kessel JAS.

Microbiol Resour Announc. 2018 Nov 29;7(21). pii: e01334-18. doi: 10.1128/MRA.01334-18. eCollection 2018 Nov.


Whole-Genome Sequence Analysis of CTX-M Containing Escherichia coli Isolates from Retail Meats and Cattle in the United States.

Tadesse DA, Li C, Mukherjee S, Hsu CH, Bodeis Jones S, Gaines SA, Kabera C, Loneragan GH, Torrence M, Harhay DM, McDermott PF, Zhao S.

Microb Drug Resist. 2018 Sep;24(7):939-948. doi: 10.1089/mdr.2018.0206. Epub 2018 Aug 27.


Effect of waste milk pasteurization on fecal shedding of Salmonella in preweaned calves.

Edrington TS, Garcia Buitrago JA, Hagevoort GR, Loneragan GH, Bricta-Harhay DM, Callaway TR, Anderson RC, Nisbet DJ.

J Dairy Sci. 2018 Oct;101(10):9266-9274. doi: 10.3168/jds.2018-14668. Epub 2018 Aug 1.


Neutral barcoding of genomes reveals the dynamics of Salmonella colonization in cattle and their peripheral lymph nodes.

Porwollik S, Genovese K, Chu W, Loneragan GH, Edrington T, McClelland M.

Vet Microbiol. 2018 Jul;220:97-106. doi: 10.1016/j.vetmic.2018.05.007. Epub 2018 May 16.


Effects of Ceftiofur and Chlortetracycline on the Resistomes of Feedlot Cattle.

Weinroth MD, Scott HM, Norby B, Loneragan GH, Noyes NR, Rovira P, Doster E, Yang X, Woerner DR, Morley PS, Belk KE.

Appl Environ Microbiol. 2018 Jun 18;84(13). pii: e00610-18. doi: 10.1128/AEM.00610-18. Print 2018 Jul 1.


Molecular detection and quantification of viable probiotic strains in animal feedstuffs using the commercial direct fed microbial Lactobacillus animalis NP51 as a model.

Ayala DI, Chen JC, Bugarel M, Loneragan GH, den Bakker HC, Kottapalli KR, Brashears MM, Nightingale KK.

J Microbiol Methods. 2018 Jun;149:36-43. doi: 10.1016/j.mimet.2018.04.012. Epub 2018 Apr 17.


Corn-Based Distillers' Grains in Diets for Feedlot Cattle Are Associated with the Burden of Escherichia coli O157 in Feces.

Chaney WE, Maloney R, Johnson BJ, Brooks JC, Brashears MM, Loneragan GH.

Foodborne Pathog Dis. 2018 Jul;15(7):398-405. doi: 10.1089/fpd.2017.2395. Epub 2018 Apr 5.


CRISPR-based assay for the molecular identification of highly prevalent Salmonella serotypes.

Bugarel M, Bakker HD, Grout J, Vignaud ML, Loneragan GH, Fach P, Brisabois A.

Food Microbiol. 2018 May;71:8-16. doi: 10.1016/ Epub 2017 Mar 29. No abstract available.


Illustrative examples of probable transfer of resistance determinants from food animals to humans: Streptothricins, glycopeptides, and colistin.

Webb HE, Angulo FJ, Granier SA, Scott HM, Loneragan GH.

F1000Res. 2017 Oct 5;6:1805. doi: 10.12688/f1000research.12777.1. eCollection 2017. Review.


Quantifying the Survival of Multiple Salmonella enterica Serovars In Vivo via Massively Parallel Whole-Genome Sequencing To Predict Zoonotic Risk.

Vohra P, Bugarel M, Turner F, Loneragan GH, Hope JC, Hopkins J, Stevens MP.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e02262-17. doi: 10.1128/AEM.02262-17. Print 2018 Feb 15.


Salmonella in Peripheral Lymph Nodes of Healthy Cattle at Slaughter.

Webb HE, Brichta-Harhay DM, Brashears MM, Nightingale KK, Arthur TM, Bosilevac JM, Kalchayanand N, Schmidt JW, Wang R, Granier SA, Brown TR, Edrington TS, Shackelford SD, Wheeler TL, Loneragan GH.

Front Microbiol. 2017 Nov 9;8:2214. doi: 10.3389/fmicb.2017.02214. eCollection 2017.


Population dynamics of enteric Salmonella in response to antimicrobial use in beef feedlot cattle.

Ohta N, Norman KN, Norby B, Lawhon SD, Vinasco J, den Bakker H, Loneragan GH, Scott HM.

Sci Rep. 2017 Oct 30;7(1):14310. doi: 10.1038/s41598-017-14751-9.


Transferability of antimicrobial resistance from multidrug-resistant Escherichia coli isolated from cattle in the USA to E. coli and Salmonella Newport recipients.

Poole TL, Callaway TR, Norman KN, Scott HM, Loneragan GH, Ison SA, Beier RC, Harhay DM, Norby B, Nisbet DJ.

J Glob Antimicrob Resist. 2017 Dec;11:123-132. doi: 10.1016/j.jgar.2017.08.001. Epub 2017 Aug 8.


Molecular detection assay of five Salmonella serotypes of public interest: Typhimurium, Enteritidis, Newport, Heidelberg, and Hadar.

Bugarel M, Tudor A, Loneragan GH, Nightingale KK.

J Microbiol Methods. 2017 Mar;134:14-20. doi: 10.1016/j.mimet.2016.12.011. Epub 2016 Dec 18.


Twenty-four hour Holter monitoring in finishing cattle housed outdoors.

Frese DA, Thomason JD, Reinhardt C, Bartle S, Rethorst D, Loneragan GH, Thomson D.

J Vet Cardiol. 2017 Apr;19(2):153-159. doi: 10.1016/j.jvc.2016.07.006. Epub 2016 Oct 6.


Effect of ractopamine hydrochloride and zilpaterol hydrochloride on cardiac electrophysiologic and hematologic variables in finishing steers.

Frese DA, Reinhardt CD, Bartle SJ, Rethorst DN, Bawa B, Thomason JD, Loneragan GH, Thomson DU.

J Am Vet Med Assoc. 2016 Sep 15;249(6):668-77. doi: 10.2460/javma.249.6.668.


Assessing Transmission of Salmonella to Bovine Peripheral Lymph Nodes upon Horn Fly Feeding.

Olafson PU, Brown TR, Lohmeyer KH, Harvey RB, Nisbet DJ, Loneragan GH, Edrington TS.

J Food Prot. 2016 Jul;79(7):1135-42. doi: 10.4315/0362-028X.JFP-15-414.


Salmonella Persistence within the Peripheral Lymph Nodes of Cattle following Experimental Inoculation.

Edrington TS, Loneragan GH, Genovese KJ, Hanson DL, Nisbet DJ.

J Food Prot. 2016 Jun;79(6):1032-5. doi: 10.4315/0362-028X.JFP-15-325.


Salmonella Prevalence and Antimicrobial Susceptibility Among Dairy Farm Environmental Samples Collected in Texas.

Rodriguez-Rivera LD, Cummings KJ, Loneragan GH, Rankin SC, Hanson DL, Leone WM, Edrington TS.

Foodborne Pathog Dis. 2016 Apr;13(4):205-11. doi: 10.1089/fpd.2015.2037. Epub 2016 Mar 8.


Carbapenem-Resistant Bacteria Recovered from Faeces of Dairy Cattle in the High Plains Region of the USA.

Webb HE, Bugarel M, den Bakker HC, Nightingale KK, Granier SA, Scott HM, Loneragan GH.

PLoS One. 2016 Jan 29;11(1):e0147363. doi: 10.1371/journal.pone.0147363. eCollection 2016.


Dissemination of the mcr-1 colistin resistance gene.

Webb HE, Granier SA, Marault M, Millemann Y, den Bakker HC, Nightingale KK, Bugarel M, Ison SA, Scott HM, Loneragan GH.

Lancet Infect Dis. 2016 Feb;16(2):144-5. doi: 10.1016/S1473-3099(15)00538-1. Epub 2015 Dec 18. No abstract available.


Targeted Amplicon Sequencing for Single-Nucleotide-Polymorphism Genotyping of Attaching and Effacing Escherichia coli O26:H11 Cattle Strains via a High-Throughput Library Preparation Technique.

Ison SA, Delannoy S, Bugarel M, Nagaraja TG, Renter DG, den Bakker HC, Nightingale KK, Fach P, Loneragan GH.

Appl Environ Microbiol. 2015 Nov 13;82(2):640-9. doi: 10.1128/AEM.03182-15. Print 2016 Jan 15.


Investigation into Possible Differences in Salmonella Prevalence in the Peripheral Lymph Nodes of Cattle Derived from Distinct Production Systems and of Different Breed Types.

Brown TR, Edrington TS, Loneragan GH, Hanson DL, Malin K, Ison JJ, Nisbet DJ.

J Food Prot. 2015 Nov;78(11):2081-4. doi: 10.4315/0362-028X.JFP-15-198.


Evidence supporting vertical transmission of Salmonella in dairy cattle.

Hanson DL, Loneragan GH, Brown TR, Nisbet DJ, Hume ME, Edrington TS.

Epidemiol Infect. 2016 Apr;144(5):962-7. doi: 10.1017/S0950268815002241. Epub 2015 Sep 30.


WGS accurately predicts antimicrobial resistance in Escherichia coli.

Tyson GH, McDermott PF, Li C, Chen Y, Tadesse DA, Mukherjee S, Bodeis-Jones S, Kabera C, Gaines SA, Loneragan GH, Edrington TS, Torrence M, Harhay DM, Zhao S.

J Antimicrob Chemother. 2015 Oct;70(10):2763-9. doi: 10.1093/jac/dkv186. Epub 2015 Jul 3.


Description of a novel fatigue syndrome of finished feedlot cattle following transportation.

Thomson DU, Loneragan GH, Henningson JN, Ensley S, Bawa B.

J Am Vet Med Assoc. 2015 Jul 1;247(1):66-72. doi: 10.2460/javma.247.1.66.


Antimicrobials in animal agriculture: parables and policy.

Scott HM, Midgley G, Loneragan GH.

Zoonoses Public Health. 2015 Apr;62 Suppl 1:3-9. doi: 10.1111/zph.12191.


Two Draft Genome Sequences of a New Serovar of Salmonella enterica, Serovar Lubbock.

Bugarel M, den Bakker HC, Nightingale KK, Brichta-Harhay DM, Edrington TS, Loneragan GH.

Genome Announc. 2015 Apr 16;3(2). pii: e00215-15. doi: 10.1128/genomeA.00215-15.


Genetic Diversity and Pathogenic Potential of Attaching and Effacing Escherichia coli O26:H11 Strains Recovered from Bovine Feces in the United States.

Ison SA, Delannoy S, Bugarel M, Nightingale KK, Webb HE, Renter DG, Nagaraja TG, Loneragan GH, Fach P.

Appl Environ Microbiol. 2015 Jun;81(11):3671-8. doi: 10.1128/AEM.00397-15. Epub 2015 Mar 20.


Reduced Burden of Salmonella enterica in Bovine Subiliac Lymph Nodes Associated with Administration of a Direct-fed Microbial.

Vipham JL, Loneragan GH, Guillen LM, Brooks JC, Johnson BJ, Pond A, Pond N, Brashears MM.

Zoonoses Public Health. 2015 Dec;62(8):599-608. doi: 10.1111/zph.12187. Epub 2015 Mar 17.


Oral salmonella challenge and subsequent uptake by the peripheral lymph nodes in calves.

Brown TR, Edrington TS, Genovese KJ, Loneragan GH, Hanson DL, Nisbet DJ.

J Food Prot. 2015 Mar;78(3):573-8. doi: 10.4315/0362-028X.JFP-14-416.


Antimicrobial interventions for O157:H7 and non-O157 Shiga toxin-producing Escherichia coli on beef subprimal and mechanically tenderized steaks.

Liao YT, Brooks JC, Martin JN, Echeverry A, Loneragan GH, Brashears MM.

J Food Prot. 2015 Mar;78(3):511-7. doi: 10.4315/0362-028X.JFP-14-178.


Salmonella in beef and produce from honduras.

Maradiaga M, Miller MF, Thompson L, Pond A, Gragg SE, Echeverry A, Garcia LG, Loneragan GH, Brashears MM.

J Food Prot. 2015 Mar;78(3):498-502. doi: 10.4315/0362-028X.JFP-14-450.


Survival and fate of Salmonella enterica serovar Montevideo in adult horn flies (Diptera: Muscidae).

Olafson PU, Lohmeyer KH, Edrington TS, Loneragan GH.

J Med Entomol. 2014 Sep;51(5):993-1001.


Non-O157 Shiga toxin-producing Escherichia coli in U. S. retail ground beef.

Liao YT, Miller MF, Loneragan GH, Brooks JC, Echeverry A, Brashears MM.

J Food Prot. 2014 Jul;77(7):1188-92. doi: 10.4315/0362-028X.JFP-13-518.


Impact of treatment strategies on cephalosporin and tetracycline resistance gene quantities in the bovine fecal metagenome.

Kanwar N, Scott HM, Norby B, Loneragan GH, Vinasco J, Cottell JL, Chalmers G, Chengappa MM, Bai J, Boerlin P.

Sci Rep. 2014 May 29;4:5100. doi: 10.1038/srep05100.


Increased mortality in groups of cattle administered the β-adrenergic agonists ractopamine hydrochloride and zilpaterol hydrochloride.

Loneragan GH, Thomson DU, Scott HM.

PLoS One. 2014 Mar 12;9(3):e91177. doi: 10.1371/journal.pone.0091177. eCollection 2014.


Evaluation of feeding distiller's grains, containing virginiamycin, on antimicrobial susceptibilities in fecal isolates of Enterococcus and Escherichia coli and prevalence of resistance genes in cattle.

Edrington TS, Bischoff KM, Loneragan GH, Nisbet DJ.

J Anim Sci. 2014 Mar;92(3):1144-9. doi: 10.2527/jas.2013-6954. Epub 2014 Feb 3.


Effects of ceftiofur and chlortetracycline treatment strategies on antimicrobial susceptibility and on tet(A), tet(B), and bla CMY-2 resistance genes among E. coli isolated from the feces of feedlot cattle.

Kanwar N, Scott HM, Norby B, Loneragan GH, Vinasco J, McGowan M, Cottell JL, Chengappa MM, Bai J, Boerlin P.

PLoS One. 2013 Nov 19;8(11):e80575. doi: 10.1371/journal.pone.0080575. eCollection 2013.


The effect of chlortetracycline on faecal microbial populations in growing swine.

Poole TL, Suchodolski JS, Callaway TR, Farrow RL, Loneragan GH, Nisbet DJ.

J Glob Antimicrob Resist. 2013 Sep;1(3):171-174. doi: 10.1016/j.jgar.2013.04.004. Epub 2013 May 30.


Development of challenge models to evaluate the efficacy of a vaccine to reduce carriage of Salmonella in peripheral lymph nodes of cattle.

Edrington TS, Loneragan GH, Hill J, Genovese KJ, Brichta-Harhay DM, Farrow RL, Krueger NA, Callaway TR, Anderson RC, Nisbet DJ.

J Food Prot. 2013 Jul;76(7):1259-63. doi: 10.4315/0362-028X.JFP-12-319.


Development of a transdermal Salmonella challenge model in calves.

Edrington TS, Loneragan GH, Hill J, Genovese KJ, He H, Callaway TR, Anderson RC, Brichta-Harhay DM, Nisbet DJ.

J Food Prot. 2013 Jul;76(7):1255-8. doi: 10.4315/0362-028X.JFP-12-317.


Substantial within-animal diversity of Salmonella isolates from lymph nodes, feces, and hides of cattle at slaughter.

Gragg SE, Loneragan GH, Nightingale KK, Brichta-Harhay DM, Ruiz H, Elder JR, Garcia LG, Miller MF, Echeverry A, Ramírez Porras RG, Brashears MM.

Appl Environ Microbiol. 2013 Aug;79(15):4744-50. doi: 10.1128/AEM.01020-13. Epub 2013 Jun 21.


Cross-sectional study examining Salmonella enterica carriage in subiliac lymph nodes of cull and feedlot cattle at harvest.

Gragg SE, Loneragan GH, Brashears MM, Arthur TM, Bosilevac JM, Kalchayanand N, Wang R, Schmidt JW, Brooks JC, Shackelford SD, Wheeler TL, Brown TR, Edrington TS, Brichta-Harhay DM.

Foodborne Pathog Dis. 2013 Apr;10(4):368-74. doi: 10.1089/fpd.2012.1275.


Salmonella and Campylobacter baseline in retail ground beef and whole-muscle cuts purchased during 2010 in the United States.

Vipham JL, Brashears MM, Loneragan GH, Echeverry A, Brooks JC, Chaney WE, Miller MF.

J Food Prot. 2012 Dec;75(12):2110-5. doi: 10.4315/0362-028X.JFP-12-077.


blaCTX-M-32 on an IncN plasmid in Escherichia coli from beef cattle in the United States.

Cottell JL, Kanwar N, Castillo-Courtade L, Chalmers G, Scott HM, Norby B, Loneragan GH, Boerlin P.

Antimicrob Agents Chemother. 2013 Feb;57(2):1096-7. doi: 10.1128/AAC.01750-12. Epub 2012 Nov 19. No abstract available.

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