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Items: 1 to 50 of 66

1.

Ultra-fast retroactive processing of liquid chromatography high-resolution full-scan Orbitrap mass spectrometry data in anti-doping screening of human urine.

Lommen A, Elaradi A, Vonaparti A, Blokland M, Nielen MW, Saad KA, Abushreeda WM, Horvatovich P, Al-Muraikhi AE, Al-Maadheed M, Georgakopoulos C.

Rapid Commun Mass Spectrom. 2019 Oct 30;33(20):1578-1588. doi: 10.1002/rcm.8507.

PMID:
31240795
2.

Use of omics analytical methods in the study of genetically modified maize varieties tested in 90 days feeding trials.

Corujo M, Pla M, van Dijk J, Voorhuijzen M, Staats M, Slot M, Lommen A, Barros E, Nadal A, Puigdomènech P, Paz JL, van der Voet H, Kok E.

Food Chem. 2019 Sep 15;292:359-371. doi: 10.1016/j.foodchem.2018.05.109. Epub 2018 May 26.

PMID:
31054688
3.

Omics analyses of potato plant materials using an improved one-class classification tool to identify aberrant compositional profiles in risk assessment procedures.

Kok E, van Dijk J, Voorhuijzen M, Staats M, Slot M, Lommen A, Venema D, Pla M, Corujo M, Barros E, Hutten R, Jansen J, van der Voet H.

Food Chem. 2019 Sep 15;292:350-358. doi: 10.1016/j.foodchem.2018.07.224. Epub 2018 Aug 24.

PMID:
31054687
4.

Comparison of gas chromatography/quadrupole time-of-flight and quadrupole Orbitrap mass spectrometry in anti-doping analysis: I. Detection of anabolic-androgenic steroids.

Abushareeda W, Tienstra M, Lommen A, Blokland M, Sterk S, Kraiem S, Horvatovich P, Nielen M, Al-Maadheed M, Georgakopoulos C.

Rapid Commun Mass Spectrom. 2018 Dec 15;32(23):2055-2064. doi: 10.1002/rcm.8281.

PMID:
30216576
5.

High resolution full scan liquid chromatography mass spectrometry comprehensive screening in sports antidoping urine analysis.

Abushareeda W, Vonaparti A, Saad KA, Almansoori M, Meloug M, Saleh A, Aguilera R, Angelis Y, Horvatovich PL, Lommen A, Alsayrafi M, Georgakopoulos C.

J Pharm Biomed Anal. 2018 Mar 20;151:10-24. doi: 10.1016/j.jpba.2017.12.025. Epub 2017 Dec 21.

PMID:
29291455
6.

Gas chromatographic quadrupole time-of-flight full scan high resolution mass spectrometric screening of human urine in antidoping analysis.

Abushareeda W, Lyris E, Kraiem S, Wahaibi AA, Alyazidi S, Dbes N, Lommen A, Nielen M, Horvatovich PL, Alsayrafi M, Georgakopoulos C.

J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Sep 15;1063:74-83. doi: 10.1016/j.jchromb.2017.08.019. Epub 2017 Aug 19.

PMID:
28850889
7.

Validation of an automated screening method for persistent organic contaminants in fats and oils by GC×GC-ToFMS.

López P, Tienstra M, Lommen A, Mol HG.

Food Chem. 2016 Nov 15;211:645-53. doi: 10.1016/j.foodchem.2016.05.041. Epub 2016 May 7.

PMID:
27283679
8.

Improved batch correction in untargeted MS-based metabolomics.

Wehrens R, Hageman JA, van Eeuwijk F, Kooke R, Flood PJ, Wijnker E, Keurentjes JJ, Lommen A, van Eekelen HD, Hall RD, Mumm R, de Vos RC.

Metabolomics. 2016;12:88. Epub 2016 Mar 18.

9.

Pulsar timing arrays: the promise of gravitational wave detection.

Lommen AN.

Rep Prog Phys. 2015 Dec;78(12):124901. doi: 10.1088/0034-4885/78/12/124901. Epub 2015 Nov 13.

PMID:
26564968
10.

Interindividual variation in gene expression responses and metabolite formation in acetaminophen-exposed primary human hepatocytes.

Jetten MJ, Ruiz-Aracama A, Coonen ML, Claessen SM, van Herwijnen MH, Lommen A, van Delft JH, Peijnenburg AA, Kleinjans JC.

Arch Toxicol. 2016 May;90(5):1103-15. doi: 10.1007/s00204-015-1545-2. Epub 2015 Jun 24.

11.

Experiential Perceptions of Relactation: A Phenomenological Study.

Lommen A, Brown B, Hollist D.

J Hum Lact. 2015 Aug;31(3):498-503. doi: 10.1177/0890334415581646. Epub 2015 Apr 21.

PMID:
25900844
12.

Integrative cross-omics analysis in primary mouse hepatocytes unravels mechanisms of cyclosporin A-induced hepatotoxicity.

Van den Hof WF, Van Summeren A, Lommen A, Coonen ML, Brauers K, van Herwijnen M, Wodzig WK, Kleinjans JC.

Toxicology. 2014 Oct 3;324:18-26. doi: 10.1016/j.tox.2014.06.003. Epub 2014 Jul 15.

PMID:
25047351
13.

Ultrafast PubChem searching combined with improved filtering rules for elemental composition analysis.

Lommen A.

Anal Chem. 2014 Jun 3;86(11):5463-9. doi: 10.1021/ac500667h. Epub 2014 May 21.

PMID:
24820703
14.

Identification of cisplatin-regulated metabolic pathways in pluripotent stem cells.

von Stechow L, Ruiz-Aracama A, van de Water B, Peijnenburg A, Danen E, Lommen A.

PLoS One. 2013 Oct 16;8(10):e76476. doi: 10.1371/journal.pone.0076476. eCollection 2013.

15.

metAlignID: a high-throughput software tool set for automated detection of trace level contaminants in comprehensive LECO two-dimensional gas chromatography time-of-flight mass spectrometry data.

Lommen A, van der Kamp HJ, Kools HJ, van der Lee MK, van der Weg G, Mol HG.

J Chromatogr A. 2012 Nov 9;1263:169-78. doi: 10.1016/j.chroma.2012.09.056. Epub 2012 Sep 24.

PMID:
23046623
16.

MetAlign 3.0: performance enhancement by efficient use of advances in computer hardware.

Lommen A, Kools HJ.

Metabolomics. 2012 Aug;8(4):719-726. Epub 2011 Oct 8.

17.

Screening for modulatory effects on steroidogenesis using the human H295R adrenocortical cell line: a metabolomics approach.

Rijk JC, Peijnenburg AA, Blokland MH, Lommen A, Hoogenboom RL, Bovee TF.

Chem Res Toxicol. 2012 Aug 20;25(8):1720-31. doi: 10.1021/tx3001779. Epub 2012 Aug 7.

PMID:
22768806
18.

Use of NMR metabolomic plasma profiling methodologies to identify illicit growth-promoting administrations.

Graham SF, Ruiz-Aracama A, Lommen A, Cannizzo FT, Biolatti B, Elliott CT, Mooney MH.

Anal Bioanal Chem. 2012 Apr;403(2):573-82. doi: 10.1007/s00216-012-5815-z. Epub 2012 Feb 28.

19.

Data (pre-)processing of nominal and accurate mass LC-MS or GC-MS data using MetAlign.

Lommen A.

Methods Mol Biol. 2012;860:229-53. doi: 10.1007/978-1-61779-594-7_15.

PMID:
22351181
20.

'Omics analysis of low dose acetaminophen intake demonstrates novel response pathways in humans.

Jetten MJ, Gaj S, Ruiz-Aracama A, de Kok TM, van Delft JH, Lommen A, van Someren EP, Jennen DG, Claessen SM, Peijnenburg AA, Stierum RH, Kleinjans JC.

Toxicol Appl Pharmacol. 2012 Mar 15;259(3):320-8. doi: 10.1016/j.taap.2012.01.009. Epub 2012 Jan 20.

PMID:
22285215
21.

Application of an untargeted metabolomics approach for the identification of compounds that may be responsible for observed differential effects in chickens fed an organic and a conventional diet.

Ruiz-Aracama A, Lommen A, Huber M, van de Vijver L, Hoogenboom R.

Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2012;29(3):323-32. doi: 10.1080/19440049.2011.641163. Epub 2012 Jan 6.

PMID:
22220906
22.

Integrating transcriptomics and metabonomics to unravel modes-of-action of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in HepG2 cells.

Jennen D, Ruiz-Aracama A, Magkoufopoulou C, Peijnenburg A, Lommen A, van Delft J, Kleinjans J.

BMC Syst Biol. 2011 Aug 31;5:139. doi: 10.1186/1752-0509-5-139.

23.

MADMAX - Management and analysis database for multiple ~omics experiments.

Lin K, Kools H, de Groot PJ, Gavai AK, Basnet RK, Cheng F, Wu J, Wang X, Lommen A, Hooiveld GJ, Bonnema G, Visser RG, Muller MR, Leunissen JA.

J Integr Bioinform. 2011 Jul 21;8(2):160. doi: 10.2390/biecoll-jib-2011-160.

PMID:
21778530
24.

Volatile compound fingerprinting of mixed-culture fermentations.

de Bok FA, Janssen PW, Bayjanov JR, Sieuwerts S, Lommen A, van Hylckama Vlieg JE, Molenaar D.

Appl Environ Microbiol. 2011 Sep;77(17):6233-9. doi: 10.1128/AEM.00352-11. Epub 2011 Jul 8.

25.

Assessment of two complementary liquid chromatography coupled to high resolution mass spectrometry metabolomics strategies for the screening of anabolic steroid treatment in calves.

Dervilly-Pinel G, Weigel S, Lommen A, Chereau S, Rambaud L, Essers M, Antignac JP, Nielen MW, Le Bizec B.

Anal Chim Acta. 2011 Aug 26;700(1-2):144-54. doi: 10.1016/j.aca.2011.02.008. Epub 2011 Feb 24.

PMID:
21742127
26.

An untargeted multi-technique metabolomics approach to studying intracellular metabolites of HepG2 cells exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin.

Ruiz-Aracama A, Peijnenburg A, Kleinjans J, Jennen D, van Delft J, Hellfrisch C, Lommen A.

BMC Genomics. 2011 May 20;12:251. doi: 10.1186/1471-2164-12-251.

27.

Ultra-fast searching assists in evaluating sub-ppm mass accuracy enhancement in U-HPLC/Orbitrap MS data.

Lommen A, Gerssen A, Oosterink JE, Kools HJ, Ruiz-Aracama A, Peters RJ, Mol HG.

Metabolomics. 2011 Mar;7(1):15-24. Epub 2010 Jul 18.

28.

An inter-laboratory comparison demonstrates that [H]-NMR metabolite fingerprinting is a robust technique for collaborative plant metabolomic data collection.

Ward JL, Baker JM, Miller SJ, Deborde C, Maucourt M, Biais B, Rolin D, Moing A, Moco S, Vervoort J, Lommen A, Schäfer H, Humpfer E, Beale MH.

Metabolomics. 2010 Jun;6(2):263-273. Epub 2010 Feb 27.

29.

Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics.

Allwood JW, Erban A, de Koning S, Dunn WB, Luedemann A, Lommen A, Kay L, Löscher R, Kopka J, Goodacre R.

Metabolomics. 2009 Dec;5(4):479-496. Epub 2009 Jul 24.

30.

Identification of anabolic steroids and derivatives using bioassay-guided fractionation, UHPLC/TOFMS analysis and accurate mass database searching.

Peters RJ, Rijk JC, Bovee TF, Nijrolder AW, Lommen A, Nielen MW.

Anal Chim Acta. 2010 Apr 1;664(1):77-88. doi: 10.1016/j.aca.2010.01.065. Epub 2010 Feb 6.

PMID:
20226935
31.

Metabolomics approach to anabolic steroid urine profiling of bovines treated with prohormones.

Rijk JC, Lommen A, Essers ML, Groot MJ, Van Hende JM, Doeswijk TG, Nielen MW.

Anal Chem. 2009 Aug 15;81(16):6879-88. doi: 10.1021/ac900874m.

PMID:
19618909
32.

Newly identified degradation products of ceftiofur and cephapirin impact the analytical approach for quantitative analysis of kidney.

Berendsen BJ, Essers ML, Mulder PP, van Bruchem GD, Lommen A, van Overbeek WM, Stolker LA.

J Chromatogr A. 2009 Nov 13;1216(46):8177-86. doi: 10.1016/j.chroma.2009.04.003. Epub 2009 Apr 9.

PMID:
19406407
33.
34.

Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry.

De Vos RC, Moco S, Lommen A, Keurentjes JJ, Bino RJ, Hall RD.

Nat Protoc. 2007;2(4):778-91.

PMID:
17446877
35.

An untargeted metabolomics approach to contaminant analysis: pinpointing potential unknown compounds.

Lommen A, van der Weg G, van Engelen MC, Bor G, Hoogenboom LA, Nielen MW.

Anal Chim Acta. 2007 Feb 12;584(1):43-9. Epub 2006 Nov 11.

PMID:
17386583
36.

The genetics of plant metabolism.

Keurentjes JJ, Fu J, de Vos CH, Lommen A, Hall RD, Bino RJ, van der Plas LH, Jansen RC, Vreugdenhil D, Koornneef M.

Nat Genet. 2006 Jul;38(7):842-9. Epub 2006 Jun 4.

PMID:
16751770
37.

Alignment and statistical difference analysis of complex peptide data sets generated by multidimensional LC-MS.

America AH, Cordewener JH, van Geffen MH, Lommen A, Vissers JP, Bino RJ, Hall RD.

Proteomics. 2006 Jan;6(2):641-53.

PMID:
16372275
38.

A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles.

Tikunov Y, Lommen A, de Vos CH, Verhoeven HA, Bino RJ, Hall RD, Bovy AG.

Plant Physiol. 2005 Nov;139(3):1125-37.

39.

The light-hyperresponsive high pigment-2dg mutation of tomato: alterations in the fruit metabolome.

Bino RJ, Ric de Vos CH, Lieberman M, Hall RD, Bovy A, Jonker HH, Tikunov Y, Lommen A, Moco S, Levin I.

New Phytol. 2005 May;166(2):427-38.

40.

Molecular cloning of two Arabidopsis UDP-galactose transporters by complementation of a deficient Chinese hamster ovary cell line.

Bakker H, Routier F, Oelmann S, Jordi W, Lommen A, Gerardy-Schahn R, Bosch D.

Glycobiology. 2005 Feb;15(2):193-201. Epub 2004 Sep 29.

PMID:
15456736
41.

Monolithic silica-based capillary reversed-phase liquid chromatography/electrospray mass spectrometry for plant metabolomics.

Tolstikov VV, Lommen A, Nakanishi K, Tanaka N, Fiehn O.

Anal Chem. 2003 Dec 1;75(23):6737-40.

PMID:
14640754
42.

Application of 1D 1H NMR for fast non-targeted screening and compositional analysis of steroid cocktails and veterinary drug formulations administered to livestock.

Lommen A, Schilt R, Weseman J, Roos AH, van Velde JW, Nielen MW.

J Pharm Biomed Anal. 2002 Apr 1;28(1):87-96.

PMID:
11861112
43.
45.

Influence of growth conditions and developmental stage on N-glycan heterogeneity of transgenic immunoglobulin G and endogenous proteins in tobacco leaves.

Elbers IJ, Stoopen GM, Bakker H, Stevens LH, Bardor M, Molthoff JW, Jordi WJ, Bosch D, Lommen A.

Plant Physiol. 2001 Jul;126(3):1314-22.

46.

Galactose-extended glycans of antibodies produced by transgenic plants.

Bakker H, Bardor M, Molthoff JW, Gomord V, Elbers I, Stevens LH, Jordi W, Lommen A, Faye L, Lerouge P, Bosch D.

Proc Natl Acad Sci U S A. 2001 Feb 27;98(5):2899-904.

47.

Effect of climate conditions and plant developmental stage on the stability of antibodies expressed in transgenic tobacco.

Stevens LH, Stoopen GM, Elbers IJ, Molthoff JW, Bakker HA, Lommen A, Bosch D, Jordi W.

Plant Physiol. 2000 Sep;124(1):173-82.

48.

Application of directly coupled HPLC-NMR-MS to the identification and confirmation of quercetin glycosides and phloretin glycosides in apple peel.

Lommen A, Godejohann M, Venema DP, Hollman PC, Spraul M.

Anal Chem. 2000 Apr 15;72(8):1793-7.

PMID:
10784143
49.

Chemical fingerprinting for the evaluation of unintended secondary metabolic changes in transgenic food crops.

Noteborn HP, Lommen A, van der Jagt RC, Weseman JM.

J Biotechnol. 2000 Jan 28;77(1):103-14.

PMID:
10674217
50.

Quantification of inositol phosphates using (31)P nuclear magnetic resonance spectroscopy in animal nutrition.

Kemme PA, Lommen A, De Jonge LH, Van der Klis JD, Jongbloed AW, Mroz Z, Beynen AC.

J Agric Food Chem. 1999 Dec;47(12):5116-21.

PMID:
10606582

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