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Items: 1 to 50 of 138

1.

Models to determine the kinetic mechanisms of ion-coupled transporters.

Lolkema JS, Slotboom DJ.

J Gen Physiol. 2019 Jan 10. pii: jgp.201812055. doi: 10.1085/jgp.201812055. [Epub ahead of print]

PMID:
30630873
2.

Arginine and Citrulline Catabolic Pathways Encoded by the arc Gene Cluster of Lactobacillus brevis ATCC 367.

Majsnerowska M, Noens EEE, Lolkema JS.

J Bacteriol. 2018 Jun 25;200(14). pii: e00182-18. doi: 10.1128/JB.00182-18. Print 2018 Jul 15.

3.

Convergent evolution of the arginine deiminase pathway: the ArcD and ArcE arginine/ornithine exchangers.

Noens EE, Lolkema JS.

Microbiologyopen. 2017 Feb;6(1). doi: 10.1002/mbo3.412. Epub 2016 Nov 1.

4.

Structure and elevator mechanism of the Na+-citrate transporter CitS.

Lolkema JS, Slotboom DJ.

Curr Opin Struct Biol. 2017 Aug;45:1-9. doi: 10.1016/j.sbi.2016.10.004. Epub 2016 Oct 21. Review.

PMID:
27776291
5.

ArcD1 and ArcD2 Arginine/Ornithine Exchangers Encoded in the Arginine Deiminase Pathway Gene Cluster of Lactococcus lactis.

Noens EE, Kaczmarek MB, Żygo M, Lolkema JS.

J Bacteriol. 2015 Nov;197(22):3545-53. doi: 10.1128/JB.00526-15. Epub 2015 Aug 31.

6.

The Hill analysis and co-ion-driven transporter kinetics.

Lolkema JS, Slotboom DJ.

J Gen Physiol. 2015 Jun;145(6):565-74. doi: 10.1085/jgp.201411332. Review.

7.

Physiology and substrate specificity of two closely related amino acid transporters, SerP1 and SerP2, of Lactococcus lactis.

Noens EE, Lolkema JS.

J Bacteriol. 2015 Mar;197(5):951-8. doi: 10.1128/JB.02471-14. Epub 2014 Dec 22.

8.

Identification of CDP-archaeol synthase, a missing link of ether lipid biosynthesis in Archaea.

Jain S, Caforio A, Fodran P, Lolkema JS, Minnaard AJ, Driessen AJM.

Chem Biol. 2014 Oct 23;21(10):1392-1401. doi: 10.1016/j.chembiol.2014.07.022. Epub 2014 Sep 11.

9.

Ca2+-citrate uptake and metabolism in Lactobacillus casei ATCC 334.

Mortera P, Pudlik A, Magni C, Alarcón S, Lolkema JS.

Appl Environ Microbiol. 2013 Aug;79(15):4603-12. doi: 10.1128/AEM.00925-13. Epub 2013 May 24.

10.

Biochemical and genetic characterization of the Enterococcus faecalis oxaloacetate decarboxylase complex.

Repizo GD, Blancato VS, Mortera P, Lolkema JS, Magni C.

Appl Environ Microbiol. 2013 May;79(9):2882-90. doi: 10.1128/AEM.03980-12. Epub 2013 Feb 22.

11.

Genome Sequence of Lactobacillus saerimneri 30a (Formerly Lactobacillus sp. Strain 30a), a Reference Lactic Acid Bacterium Strain Producing Biogenic Amines.

Romano A, Trip H, Campbell-Sills H, Bouchez O, Sherman D, Lolkema JS, Lucas PM.

Genome Announc. 2013 Jan;1(1). pii: e00097-12. doi: 10.1128/genomeA.00097-12. Epub 2013 Feb 7.

12.

Three-component lysine/ornithine decarboxylation system in Lactobacillus saerimneri 30a.

Romano A, Trip H, Lolkema JS, Lucas PM.

J Bacteriol. 2013 Mar;195(6):1249-54. doi: 10.1128/JB.02070-12. Epub 2013 Jan 11.

13.

Uptake of α-ketoglutarate by citrate transporter CitP drives transamination in Lactococcus lactis.

Pudlik AM, Lolkema JS.

Appl Environ Microbiol. 2013 Feb;79(4):1095-101. doi: 10.1128/AEM.02254-12. Epub 2012 Nov 30.

14.

Genomic distribution of the small multidrug resistance protein EmrE over 29 Escherichia coli strains reveals two forms of the protein.

Kolbusz MA, Slotboom DJ, Lolkema JS.

FEBS J. 2013 Jan;280(1):244-55. doi: 10.1111/febs.12065. Epub 2012 Dec 11.

15.

Cloning, expression, and functional characterization of secondary amino acid transporters of Lactococcus lactis.

Trip H, Mulder NL, Lolkema JS.

J Bacteriol. 2013 Jan;195(2):340-50. doi: 10.1128/JB.01948-12. Epub 2012 Nov 9.

16.

Role of individual positive charges in the membrane orientation and activity of transporters of the small multidrug resistance family.

Kolbusz MA, Slotboom DJ, Lolkema JS.

Biochemistry. 2012 Nov 6;51(44):8867-76. doi: 10.1021/bi300854c. Epub 2012 Oct 23.

PMID:
23043311
17.

Rerouting citrate metabolism in Lactococcus lactis to citrate-driven transamination.

Pudlik AM, Lolkema JS.

Appl Environ Microbiol. 2012 Sep;78(18):6665-73. doi: 10.1128/AEM.01811-12. Epub 2012 Jul 13.

18.

Substrate specificity of the citrate transporter CitP of Lactococcus lactis.

Pudlik AM, Lolkema JS.

J Bacteriol. 2012 Jul;194(14):3627-35. doi: 10.1128/JB.00196-12. Epub 2012 May 4.

19.

Improved acid stress survival of Lactococcus lactis expressing the histidine decarboxylation pathway of Streptococcus thermophilus CHCC1524.

Trip H, Mulder NL, Lolkema JS.

J Biol Chem. 2012 Mar 30;287(14):11195-204. doi: 10.1074/jbc.M111.330704. Epub 2012 Feb 17.

20.

Evidence of two functionally distinct ornithine decarboxylation systems in lactic acid bacteria.

Romano A, Trip H, Lonvaud-Funel A, Lolkema JS, Lucas PM.

Appl Environ Microbiol. 2012 Mar;78(6):1953-61. doi: 10.1128/AEM.07161-11. Epub 2012 Jan 13.

21.

Turnover and accessibility of a reentrant loop of the Na+-glutamate transporter GltS are modulated by the central cytoplasmic loop.

Krupnik T, Sobczak-Elbourne I, Lolkema JS.

Mol Membr Biol. 2011 Oct-Nov;28(7-8):462-72. doi: 10.3109/09687688.2011.624989. Epub 2011 Oct 13.

PMID:
21995702
22.

Membrane topology screen of secondary transport proteins in structural class ST[3] of the MemGen classification. Confirmation and structural diversity.

ter Horst R, Lolkema JS.

Biochim Biophys Acta. 2012 Jan;1818(1):72-81. doi: 10.1016/j.bbamem.2011.09.021. Epub 2011 Sep 29.

23.

pSEUDO, a genetic integration standard for Lactococcus lactis.

Pinto JP, Zeyniyev A, Karsens H, Trip H, Lolkema JS, Kuipers OP, Kok J.

Appl Environ Microbiol. 2011 Sep;77(18):6687-90. doi: 10.1128/AEM.05196-11. Epub 2011 Jul 15.

24.

Mechanism of citrate metabolism by an oxaloacetate decarboxylase-deficient mutant of Lactococcus lactis IL1403.

Pudlik AM, Lolkema JS.

J Bacteriol. 2011 Aug;193(16):4049-56. doi: 10.1128/JB.05012-11. Epub 2011 Jun 10.

25.

Cross-linking of dimeric CitS and GltS transport proteins.

Krupnik T, Dobrowolski A, Lolkema JS.

Mol Membr Biol. 2011 Aug;28(5):243-53. doi: 10.3109/09687688.2011.581252. Epub 2011 May 20.

PMID:
21599460
26.

Characterization of the tyramine-producing pathway in Sporolactobacillus sp. P3J.

Coton M, Fernández M, Trip H, Ladero V, Mulder NL, Lolkema JS, Alvarez MA, Coton E.

Microbiology. 2011 Jun;157(Pt 6):1841-9. doi: 10.1099/mic.0.046367-0. Epub 2011 Mar 17.

PMID:
21415114
27.

HdcB, a novel enzyme catalysing maturation of pyruvoyl-dependent histidine decarboxylase.

Trip H, Mulder NL, Rattray FP, Lolkema JS.

Mol Microbiol. 2011 Feb;79(4):861-71. doi: 10.1111/j.1365-2958.2010.07492.x. Epub 2011 Jan 5.

28.

Citrate uptake in exchange with intermediates in the citrate metabolic pathway in Lactococcus lactis IL1403.

Pudlik AM, Lolkema JS.

J Bacteriol. 2011 Feb;193(3):706-14. doi: 10.1128/JB.01171-10. Epub 2010 Nov 29.

29.

Biogenic amines in fermented foods.

Spano G, Russo P, Lonvaud-Funel A, Lucas P, Alexandre H, Grandvalet C, Coton E, Coton M, Barnavon L, Bach B, Rattray F, Bunte A, Magni C, Ladero V, Alvarez M, Fernández M, Lopez P, de Palencia PF, Corbi A, Trip H, Lolkema JS.

Eur J Clin Nutr. 2010 Nov;64 Suppl 3:S95-100. doi: 10.1038/ejcn.2010.218.

PMID:
21045859
30.

Orientation of small multidrug resistance transporter subunits in the membrane: correlation with the positive-inside rule.

Kolbusz MA, ter Horst R, Slotboom DJ, Lolkema JS.

J Mol Biol. 2010 Sep 10;402(1):127-38. doi: 10.1016/j.jmb.2010.07.019. Epub 2010 Jul 17.

PMID:
20643145
31.

Origin of the putrescine-producing ability of the coagulase-negative bacterium Staphylococcus epidermidis 2015B.

Coton E, Mulder N, Coton M, Pochet S, Trip H, Lolkema JS.

Appl Environ Microbiol. 2010 Aug;76(16):5570-6. doi: 10.1128/AEM.00441-10. Epub 2010 Jun 25.

32.

Evolution of antiparallel two-domain membrane proteins. Swapping domains in the glutamate transporter GltS.

Dobrowolski A, Lolkema JS.

Biochemistry. 2010 Jul 27;49(29):5972-4. doi: 10.1021/bi100918j.

PMID:
20557112
33.

Cross-linking of trans reentrant loops in the Na(+)-citrate transporter CitS of Klebsiella pneumoniae.

Dobrowolski A, Fusetti F, Lolkema JS.

Biochemistry. 2010 Jun 1;49(21):4509-15. doi: 10.1021/bi100336s. Erratum in: Biochemistry. 2010 Dec 7;49(48):10349. Fusetti, Fabrizia [added].

PMID:
20420430
34.

Rapid screening of membrane topology of secondary transport proteins.

Ter Horst R, Lolkema JS.

Biochim Biophys Acta. 2010 Mar;1798(3):672-80. doi: 10.1016/j.bbamem.2009.11.010. Epub 2009 Nov 22.

35.

Functional importance of GGXG sequence motifs in putative reentrant loops of 2HCT and ESS transport proteins.

Dobrowolski A, Lolkema JS.

Biochemistry. 2009 Aug 11;48(31):7448-56. doi: 10.1021/bi9004914.

PMID:
19594131
36.

Projection structure by single-particle electron microscopy of secondary transport proteins GltT, CitS, and GltS.

Mościcka KB, Krupnik T, Boekema EJ, Lolkema JS.

Biochemistry. 2009 Jul 21;48(28):6618-23. doi: 10.1021/bi900838d.

PMID:
19518127
37.

Weissella halotolerans W22 combines arginine deiminase and ornithine decarboxylation pathways and converts arginine to putrescine.

Pereira CI, San Romão MV, Lolkema JS, Crespo MT.

J Appl Microbiol. 2009 Dec 1;107(6):1894-902. doi: 10.1111/j.1365-2672.2009.04371.x. Epub 2009 May 5.

38.

The major amino acid transporter superfamily has a similar core structure as Na+-galactose and Na+-leucine transporters.

Lolkema JS, Slotboom DJ.

Mol Membr Biol. 2008 Sep;25(6-7):567-70. doi: 10.1080/09687680802541177. Epub 2008 Nov 21.

PMID:
19031293
39.

Human scFv SIgA expressed on Lactococcus lactis as a vector for the treatment of mucosal disease.

Yuvaraj S, Al-Lahham S, Marreddy RK, Dijkstra G, Wolken WA, Lolkema JS, Helfrich W, Johansen FE, Peppelenbosch MP, Bos NA.

Mol Nutr Food Res. 2008 Aug;52(8):913-20. doi: 10.1002/mnfr.200700132. Erratum in: Mol Nutr Food Res. 2012 Jan;56(1):197. Lahham, Saed [corrected to Al-Lahham, Sa'ad]..

PMID:
18504703
40.

Evolution of antiparallel two-domain membrane proteins: tracing multiple gene duplication events in the DUF606 family.

Lolkema JS, Dobrowolski A, Slotboom DJ.

J Mol Biol. 2008 May 2;378(3):596-606. doi: 10.1016/j.jmb.2008.03.005. Epub 2008 Mar 12.

PMID:
18384811
41.

Agmatine deiminase pathway genes in Lactobacillus brevis are linked to the tyrosine decarboxylation operon in a putative acid resistance locus.

Lucas PM, Blancato VS, Claisse O, Magni C, Lolkema JS, Lonvaud-Funel A.

Microbiology. 2007 Jul;153(Pt 7):2221-30.

PMID:
17600066
42.

Membrane topology prediction by hydropathy profile alignment: membrane topology of the Na(+)-glutamate transporter GltS.

Dobrowolski A, Sobczak-Elbourne I, Lolkema JS.

Biochemistry. 2007 Mar 6;46(9):2326-32. Epub 2007 Feb 2.

PMID:
17269795
43.

Domain structure and pore loops in the 2-hydroxycarboxylate transporter family.

Lolkema JS.

J Mol Microbiol Biotechnol. 2006;11(6):318-25. Review.

PMID:
17114896
44.

Functional characterization and Me ion specificity of a Ca-citrate transporter from Enterococcus faecalis.

Blancato VS, Magni C, Lolkema JS.

FEBS J. 2006 Nov;273(22):5121-30. Epub 2006 Oct 17.

45.

The ntp operon encoding the Na+ V-ATPase of the thermophile Caloramator fervidus.

Ubbink-Kok T, Nijland J, Slotboom DJ, Lolkema JS.

Arch Microbiol. 2006 Dec;186(6):513-7. Epub 2006 Sep 12.

PMID:
16967304
46.
47.

The 2-hydroxycarboxylate transporter family: physiology, structure, and mechanism.

Sobczak I, Lolkema JS.

Microbiol Mol Biol Rev. 2005 Dec;69(4):665-95. Review.

48.

Sequence and hydropathy profile analysis of two classes of secondary transporters.

Lolkema JS, Slotboom DJ.

Mol Membr Biol. 2005 May-Jun;22(3):177-89.

PMID:
16096261
50.

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