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Items: 22

1.

Quantitating the epigenetic transformation contributing to cholesterol homeostasis using Gaussian process.

Wang C, Scott SM, Subramanian K, Loguercio S, Zhao P, Hutt DM, Farhat NY, Porter FD, Balch WE.

Nat Commun. 2019 Nov 7;10(1):5052. doi: 10.1038/s41467-019-12969-x.

2.

Epigenetic Enhancer Marks and Transcription Factor Binding Influence Vκ Gene Rearrangement in Pre-B Cells and Pro-B Cells.

Kleiman E, Loguercio S, Feeney AJ.

Front Immunol. 2018 Sep 13;9:2074. doi: 10.3389/fimmu.2018.02074. eCollection 2018.

3.

Correcting the F508del-CFTR variant by modulating eukaryotic translation initiation factor 3-mediated translation initiation.

Hutt DM, Loguercio S, Roth DM, Su AI, Balch WE.

J Biol Chem. 2018 Aug 31;293(35):13477-13495. doi: 10.1074/jbc.RA118.003192. Epub 2018 Jul 13.

4.

A Proteomic Variant Approach (ProVarA) for Personalized Medicine of Inherited and Somatic Disease.

Hutt DM, Loguercio S, Campos AR, Balch WE.

J Mol Biol. 2018 Sep 14;430(18 Pt A):2951-2973. doi: 10.1016/j.jmb.2018.06.017. Epub 2018 Jun 18.

5.

Variable Extent of Lineage-Specificity and Developmental Stage-Specificity of Cohesin and CCCTC-Binding Factor Binding Within the Immunoglobulin and T Cell Receptor Loci.

Loguercio S, Barajas-Mora EM, Shih HY, Krangel MS, Feeney AJ.

Front Immunol. 2018 Mar 8;9:425. doi: 10.3389/fimmu.2018.00425. eCollection 2018.

6.

YY1 plays an essential role at all stages of B-cell differentiation.

Kleiman E, Jia H, Loguercio S, Su AI, Feeney AJ.

Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):E3911-20. doi: 10.1073/pnas.1606297113. Epub 2016 Jun 22.

7.

Downregulation of c-SRC kinase CSK promotes castration resistant prostate cancer and pinpoints a novel disease subclass.

Yang CC, Fazli L, Loguercio S, Zharkikh I, Aza-Blanc P, Gleave ME, Wolf DA.

Oncotarget. 2015 Sep 8;6(26):22060-71.

8.

The cure: design and evaluation of a crowdsourcing game for gene selection for breast cancer survival prediction.

Good BM, Loguercio S, Griffith OL, Nanis M, Wu C, Su AI.

JMIR Serious Games. 2014 Jul 29;2(2):e7. doi: 10.2196/games.3350.

9.

Omics Pipe: a community-based framework for reproducible multi-omics data analysis.

Fisch KM, Meißner T, Gioia L, Ducom JC, Carland TM, Loguercio S, Su AI.

Bioinformatics. 2015 Jun 1;31(11):1724-8. doi: 10.1093/bioinformatics/btv061. Epub 2015 Jan 30.

10.

Pathway and time-resolved benzo[a]pyrene toxicity on Hepa1c1c7 cells at toxic and subtoxic exposure.

Kalkhof S, Dautel F, Loguercio S, Baumann S, Trump S, Jungnickel H, Otto W, Rudzok S, Potratz S, Luch A, Lehmann I, Beyer A, von Bergen M.

J Proteome Res. 2015 Jan 2;14(1):164-82. doi: 10.1021/pr500957t. Epub 2014 Nov 17.

PMID:
25362887
11.

Dizeez: an online game for human gene-disease annotation.

Loguercio S, Good BM, Su AI.

PLoS One. 2013 Aug 7;8(8):e71171. doi: 10.1371/journal.pone.0071171. eCollection 2013. Erratum in: PLoS One. 2013;8(8). doi:10.1371/annotation/efa93b55-c8f0-4943-b922-a585d68f0bd0.

12.

Unifying model for molecular determinants of the preselection Vβ repertoire.

Gopalakrishnan S, Majumder K, Predeus A, Huang Y, Koues OI, Verma-Gaur J, Loguercio S, Su AI, Feeney AJ, Artyomov MN, Oltz EM.

Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):E3206-15. doi: 10.1073/pnas.1304048110. Epub 2013 Aug 5.

13.

Deep sequencing of the murine IgH repertoire reveals complex regulation of nonrandom V gene rearrangement frequencies.

Choi NM, Loguercio S, Verma-Gaur J, Degner SC, Torkamani A, Su AI, Oltz EM, Artyomov M, Feeney AJ.

J Immunol. 2013 Sep 1;191(5):2393-402. doi: 10.4049/jimmunol.1301279. Epub 2013 Jul 29.

14.

A task-based approach for Gene Ontology evaluation.

Clarke EL, Loguercio S, Good BM, Su AI.

J Biomed Semantics. 2013 Apr 15;4 Suppl 1:S4. doi: 10.1186/2041-1480-4-S1-S4. Epub 2013 Apr 15.

15.

Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas.

Gunaratne J, Schmidt A, Quandt A, Neo SP, Saraç OS, Gracia T, Loguercio S, Ahrné E, Xia RL, Tan KH, Lössner C, Bähler J, Beyer A, Blackstock W, Aebersold R.

Mol Cell Proteomics. 2013 Jun;12(6):1741-51. doi: 10.1074/mcp.M112.023754. Epub 2013 Mar 5.

16.

Linking genes to diseases with a SNPedia-Gene Wiki mashup.

Good BM, Clarke EL, Loguercio S, Su AI.

J Biomed Semantics. 2012 Apr 24;3 Suppl 1:S6. doi: 10.1186/2041-1480-3-S1-S6.

17.

Building a biomedical semantic network in Wikipedia with Semantic Wiki Links.

Good BM, Clarke EL, Loguercio S, Su AI.

Database (Oxford). 2012 Mar 20;2012:bar060. doi: 10.1093/database/bar060. Print 2012.

18.

Integrative analysis of low- and high-resolution eQTL.

Loguercio S, Overall RW, Michaelson JJ, Wiltshire T, Pletcher MT, Miller BH, Walker JR, Kempermann G, Su AI, Beyer A.

PLoS One. 2010 Nov 10;5(11):e13920. doi: 10.1371/journal.pone.0013920.

19.

Detection and interpretation of expression quantitative trait loci (eQTL).

Michaelson JJ, Loguercio S, Beyer A.

Methods. 2009 Jul;48(3):265-76. doi: 10.1016/j.ymeth.2009.03.004. Epub 2009 Mar 18.

PMID:
19303049
20.

In HspA from Helicobacter pylori vicinal disulfide bridges are a key determinant of domain B structure.

Loguercio S, Dian C, Flagiello A, Scannella A, Pucci P, Terradot L, Zagari A.

FEBS Lett. 2008 Oct 15;582(23-24):3537-41. doi: 10.1016/j.febslet.2008.09.025. Epub 2008 Sep 19.

21.

Polyproline helices in protein structures: A statistical survey.

Berisio R, Loguercio S, De Simone A, Zagari A, Vitagliano L.

Protein Pept Lett. 2006;13(8):847-54.

PMID:
17073732
22.

Upper gastrointestinal fiberoptic endoscopy in pediatric patients.

Prolla JC, Diehl AS, Bemvenuti GA, Loguercio SV, Magalhães DS, Silveira TR.

Gastrointest Endosc. 1983 Nov;29(4):279-81.

PMID:
6605895

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