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Items: 1 to 50 of 69

1.

Radical amino acid mutations persist longer in the absence of sex.

Sharbrough J, Luse M, Boore JL, Logsdon JM Jr, Neiman M.

Evolution. 2018 Apr;72(4):808-824. doi: 10.1111/evo.13465. Epub 2018 Mar 30.

PMID:
29520921
2.

Retention of Core Meiotic Genes Across Diverse Hymenoptera.

Tvedte ES, Forbes AA, Logsdon JM Jr.

J Hered. 2017 Oct 30;108(7):791-806. doi: 10.1093/jhered/esx062.

PMID:
28992199
3.

Genomic evidence for population-specific responses to co-evolving parasites in a New Zealand freshwater snail.

Bankers L, Fields P, McElroy KE, Boore JL, Logsdon JM Jr, Neiman M.

Mol Ecol. 2017 Jul;26(14):3663-3675. doi: 10.1111/mec.14146. Epub 2017 May 10.

PMID:
28429458
4.

Asexual Daphnia genomes expose something old, new, borrowed, and blue.

Logsdon JM Jr.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15518-9. doi: 10.1073/pnas.1314088110. Epub 2013 Sep 23. No abstract available.

5.
6.

Inventory and phylogenetic analysis of meiotic genes in monogonont rotifers.

Hanson SJ, Schurko AM, Hecox-Lea B, Welch DB, Stelzer CP, Logsdon JM Jr.

J Hered. 2013 May-Jun;104(3):357-70. doi: 10.1093/jhered/est011. Epub 2013 Mar 13.

7.

Characterization of transcriptomes from sexual and asexual lineages of a New Zealand snail (Potamopyrgus antipodarum).

Wilton PR, Sloan DB, Logsdon JM Jr, Doddapaneni H, Neiman M.

Mol Ecol Resour. 2013 Mar;13(2):289-94. doi: 10.1111/1755-0998.12051. Epub 2012 Dec 27.

PMID:
23280235
8.

Phylogeny of parasitic parabasalia and free-living relatives inferred from conventional markers vs. Rpb1, a single-copy gene.

Malik SB, Brochu CD, Bilic I, Yuan J, Hess M, Logsdon JM Jr, Carlton JM.

PLoS One. 2011;6(6):e20774. doi: 10.1371/journal.pone.0020774. Epub 2011 Jun 9.

9.

NASA: what now?

Bushnell D, Garneau M, Logsdon JM, Sagdeev R, Lu E, Mountain M, Stephenson N.

Nature. 2011 Apr 7;472(7341):27-9. doi: 10.1038/472027a. No abstract available. Erratum in: Nature. 2011 Apr 21;472(7343):289.

PMID:
21475173
10.

Eukaryotic evolution: the importance of being archaebacterial.

Logsdon JM Jr.

Curr Biol. 2010 Dec 21;20(24):R1078-9. doi: 10.1016/j.cub.2010.11.020.

11.

Meeting for sex in Iowa.

Logsdon JM Jr, Neiman M.

J Hered. 2010 Mar-Apr;101 Suppl 1:S1-2. doi: 10.1093/jhered/esq038. No abstract available.

PMID:
20421319
12.

Inventory and phylogenomic distribution of meiotic genes in Nasonia vitripennis and among diverse arthropods.

Schurko AM, Mazur DJ, Logsdon JM Jr.

Insect Mol Biol. 2010 Feb;19 Suppl 1:165-80. doi: 10.1111/j.1365-2583.2009.00948.x.

PMID:
20167026
13.

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.

Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK; Nasonia Genome Working Group, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van de Zande L, Worley KC, Zdobnov EM, Aerts M, Albert S, Anaya VH, Anzola JM, Barchuk AR, Behura SK, Bera AN, Berenbaum MR, Bertossa RC, Bitondi MM, Bordenstein SR, Bork P, Bornberg-Bauer E, Brunain M, Cazzamali G, Chaboub L, Chacko J, Chavez D, Childers CP, Choi JH, Clark ME, Claudianos C, Clinton RA, Cree AG, Cristino AS, Dang PM, Darby AC, de Graaf DC, Devreese B, Dinh HH, Edwards R, Elango N, Elhaik E, Ermolaeva O, Evans JD, Foret S, Fowler GR, Gerlach D, Gibson JD, Gilbert DG, Graur D, Gründer S, Hagen DE, Han Y, Hauser F, Hultmark D, Hunter HC 4th, Hurst GD, Jhangian SN, Jiang H, Johnson RM, Jones AK, Junier T, Kadowaki T, Kamping A, Kapustin Y, Kechavarzi B, Kim J, Kim J, Kiryutin B, Koevoets T, Kovar CL, Kriventseva EV, Kucharski R, Lee H, Lee SL, Lees K, Lewis LR, Loehlin DW, Logsdon JM Jr, Lopez JA, Lozado RJ, Maglott D, Maleszka R, Mayampurath A, Mazur DJ, McClure MA, Moore AD, Morgan MB, Muller J, Munoz-Torres MC, Muzny DM, Nazareth LV, Neupert S, Nguyen NB, Nunes FM, Oakeshott JG, Okwuonu GO, Pannebakker BA, Pejaver VR, Peng Z, Pratt SC, Predel R, Pu LL, Ranson H, Raychoudhury R, Rechtsteiner A, Reese JT, Reid JG, Riddle M, Robertson HM, Romero-Severson J, Rosenberg M, Sackton TB, Sattelle DB, Schlüns H, Schmitt T, Schneider M, Schüler A, Schurko AM, Shuker DM, Simões ZL, Sinha S, Smith Z, Solovyev V, Souvorov A, Springauf A, Stafflinger E, Stage DE, Stanke M, Tanaka Y, Telschow A, Trent C, Vattathil S, Verhulst EC, Viljakainen L, Wanner KW, Waterhouse RM, Whitfield JB, Wilkes TE, Williamson M, Willis JH, Wolschin F, Wyder S, Yamada T, Yi SV, Zecher CN, Zhang L, Gibbs RA.

Science. 2010 Jan 15;327(5963):343-8. doi: 10.1126/science.1178028. Erratum in: Science. 2010 Mar 26;327(5973):1577.

14.

Accelerated mutation accumulation in asexual lineages of a freshwater snail.

Neiman M, Hehman G, Miller JT, Logsdon JM Jr, Taylor DR.

Mol Biol Evol. 2010 Apr;27(4):954-63. doi: 10.1093/molbev/msp300. Epub 2009 Dec 8.

15.

Meiosis genes in Daphnia pulex and the role of parthenogenesis in genome evolution.

Schurko AM, Logsdon JM Jr, Eads BD.

BMC Evol Biol. 2009 Apr 21;9:78. doi: 10.1186/1471-2148-9-78.

16.

Signs of sex: what we know and how we know it.

Schurko AM, Neiman M, Logsdon JM Jr.

Trends Ecol Evol. 2009 Apr;24(4):208-17. doi: 10.1016/j.tree.2008.11.010. Epub 2009 Mar 11. Review.

PMID:
19282047
17.

Consensus nomenclature for the human ArfGAP domain-containing proteins.

Kahn RA, Bruford E, Inoue H, Logsdon JM Jr, Nie Z, Premont RT, Randazzo PA, Satake M, Theibert AB, Zapp ML, Cassel D.

J Cell Biol. 2008 Sep 22;182(6):1039-44. doi: 10.1083/jcb.200806041. Review.

18.

Molecular phylogeny of the salmonellae: relationships among Salmonella species and subspecies determined from four housekeeping genes and evidence of lateral gene transfer events.

McQuiston JR, Herrera-Leon S, Wertheim BC, Doyle J, Fields PI, Tauxe RV, Logsdon JM Jr.

J Bacteriol. 2008 Nov;190(21):7060-7. doi: 10.1128/JB.01552-07. Epub 2008 Aug 29.

19.

An expanded inventory of conserved meiotic genes provides evidence for sex in Trichomonas vaginalis.

Malik SB, Pightling AW, Stefaniak LM, Schurko AM, Logsdon JM Jr.

PLoS One. 2007 Aug 6;3(8):e2879. doi: 10.1371/journal.pone.0002879.

20.

Using a meiosis detection toolkit to investigate ancient asexual "scandals" and the evolution of sex.

Schurko AM, Logsdon JM Jr.

Bioessays. 2008 Jun;30(6):579-89. doi: 10.1002/bies.20764. Review.

PMID:
18478537
21.

Do Salmonella carry spare tyres?

McQuiston JR, Fields PI, Tauxe RV, Logsdon JM Jr.

Trends Microbiol. 2008 Apr;16(4):142-8. doi: 10.1016/j.tim.2008.01.009. Epub 2008 Mar 28.

PMID:
18375124
22.

A photosynthetic alveolate closely related to apicomplexan parasites.

Moore RB, Oborník M, Janouskovec J, Chrudimský T, Vancová M, Green DH, Wright SW, Davies NW, Bolch CJ, Heimann K, Slapeta J, Hoegh-Guldberg O, Logsdon JM, Carter DA.

Nature. 2008 Feb 21;451(7181):959-63. doi: 10.1038/nature06635. Erratum in: Nature. 2008 Apr 17;452(7189):900.

PMID:
18288187
23.

Evolutionary genetics: sex happens in Giardia.

Logsdon JM Jr.

Curr Biol. 2008 Jan 22;18(2):R66-8. doi: 10.1016/j.cub.2007.11.019.

24.

Broadly sampled multigene trees of eukaryotes.

Yoon HS, Grant J, Tekle YI, Wu M, Chaon BC, Cole JC, Logsdon JM Jr, Patterson DJ, Bhattacharya D, Katz LA.

BMC Evol Biol. 2008 Jan 18;8:14. doi: 10.1186/1471-2148-8-14.

25.

Global business citizenship in action: business responses to healthcare crises.

Wood DJ, Logsdon JM.

Organ Ethic. 2007 Spring-Summer;4(1):8-22. No abstract available.

PMID:
18193769
26.

Protist homologs of the meiotic Spo11 gene and topoisomerase VI reveal an evolutionary history of gene duplication and lineage-specific loss.

Malik SB, Ramesh MA, Hulstrand AM, Logsdon JM Jr.

Mol Biol Evol. 2007 Dec;24(12):2827-41. Epub 2007 Oct 5.

PMID:
17921483
27.

A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution.

Andersson JO, Sjögren AM, Horner DS, Murphy CA, Dyal PL, Svärd SG, Logsdon JM Jr, Ragan MA, Hirt RP, Roger AJ.

BMC Genomics. 2007 Feb 14;8:51.

28.

Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis.

Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, Van de Peer Y, Miranda-Saavedra D, Barton GJ, Westrop GD, Müller S, Dessi D, Fiori PL, Ren Q, Paulsen I, Zhang H, Bastida-Corcuera FD, Simoes-Barbosa A, Brown MT, Hayes RD, Mukherjee M, Okumura CY, Schneider R, Smith AJ, Vanacova S, Villalvazo M, Haas BJ, Pertea M, Feldblyum TV, Utterback TR, Shu CL, Osoegawa K, de Jong PJ, Hrdy I, Horvathova L, Zubacova Z, Dolezal P, Malik SB, Logsdon JM Jr, Henze K, Gupta A, Wang CC, Dunne RL, Upcroft JA, Upcroft P, White O, Salzberg SL, Tang P, Chiu CH, Lee YS, Embley TM, Coombs GH, Mottram JC, Tachezy J, Fraser-Liggett CM, Johnson PJ.

Science. 2007 Jan 12;315(5809):207-12.

29.

Adaptation of a diverse simian immunodeficiency virus population to a new host is revealed through a systematic approach to identify amino acid sites under selection.

Vanderford TH, Demma LJ, Feinberg MB, Staprans SI, Logsdon JM Jr.

Mol Biol Evol. 2007 Mar;24(3):660-9. Epub 2006 Dec 11.

PMID:
17159231
30.

Evolution of the uniquely adaptable lentiviral envelope in a natural reservoir host.

Demma LJ, Vanderford TH, Logsdon JM Jr, Feinberg MB, Staprans SI.

Retrovirology. 2006 Mar 20;3:19.

31.

Identification of two proteins required for conjunction and regular segregation of achiasmate homologs in Drosophila male meiosis.

Thomas SE, Soltani-Bejnood M, Roth P, Dorn R, Logsdon JM Jr, McKee BD.

Cell. 2005 Nov 18;123(4):555-68.

32.

SIVsm quasispecies adaptation to a new simian host.

Demma LJ, Logsdon JM Jr, Vanderford TH, Feinberg MB, Staprans SI.

PLoS Pathog. 2005 Sep;1(1):e3. Epub 2005 Sep 30.

33.

An empirical study of the evolution of virulence under both horizontal and vertical transmission.

Stewart AD, Logsdon JM Jr, Kelley SE.

Evolution. 2005 Apr;59(4):730-9.

PMID:
15926685
34.

Functional evolution of ADAMTS genes: evidence from analyses of phylogeny and gene organization.

Nicholson AC, Malik SB, Logsdon JM Jr, Van Meir EG.

BMC Evol Biol. 2005 Feb 4;5:11.

35.
36.

Functional genomic analysis of the ADP-ribosylation factor family of GTPases: phylogeny among diverse eukaryotes and function in C. elegans.

Li Y, Kelly WG, Logsdon JM Jr, Schurko AM, Harfe BD, Hill-Harfe KL, Kahn RA.

FASEB J. 2004 Dec;18(15):1834-50.

PMID:
15576487
37.

Worm genomes hold the smoking guns of intron gain.

Logsdon JM Jr.

Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11195-6. Epub 2004 Jul 26. Review. No abstract available.

38.

The commercial development of space: is an international regulatory framework needed?

Contant CM, Logsdon JM.

Acta Astronaut. 2004 Apr;54(8):585-91.

PMID:
14740658
39.

Expression and phylogenetic analyses of three zebrafish FoxI class genes.

Solomon KS, Logsdon JM Jr, Fritz A.

Dev Dyn. 2003 Nov;228(3):301-7.

40.

Much ado about bacteria-to-vertebrate lateral gene transfer.

Genereux DP, Logsdon JM Jr.

Trends Genet. 2003 Apr;19(4):191-5. Review.

PMID:
12683971
41.

Analyses of RNA Polymerase II genes from free-living protists: phylogeny, long branch attraction, and the eukaryotic big bang.

Dacks JB, Marinets A, Ford Doolittle W, Cavalier-Smith T, Logsdon JM Jr.

Mol Biol Evol. 2002 Jun;19(6):830-40.

PMID:
12032239
42.

Genetic complementation in apicomplexan parasites.

Striepen B, White MW, Li C, Guerini MN, Malik SB, Logsdon JM Jr, Liu C, Abrahamsen MS.

Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):6304-9. Epub 2002 Apr 16.

43.

Nine novel conserved motifs in BRCA1 identified by the chicken orthologue.

Orelli BJ, Logsdon JM Jr, Bishop DK.

Oncogene. 2001 Jul 19;20(32):4433-8.

44.

Origin and evolution of eukaryotic chaperonins: phylogenetic evidence for ancient duplications in CCT genes.

Archibald JM, Logsdon JM Jr, Doolittle WF.

Mol Biol Evol. 2000 Oct;17(10):1456-66.

PMID:
11018153
45.

ETn insertion in the mouse Adcy1 gene: transcriptional and phylogenetic analyses.

Leong WL, Dobson MJ, Logsdon JM Jr, Abdel-Majid RM, Schalkwyk LC, Guernsey DL, Neumann PE.

Mamm Genome. 2000 Feb;11(2):97-103.

PMID:
10656922
46.
47.

Thermotoga heats up lateral gene transfer.

Logsdon JM, Faguy DM.

Curr Biol. 1999 Oct 7;9(19):R747-51. Review.

48.

Recurrent paralogy in the evolution of archaeal chaperonins.

Archibald JM, Logsdon JM, Doolittle WF.

Curr Biol. 1999 Sep 23;9(18):1053-6.

49.
50.

The recent origins of spliceosomal introns revisited.

Logsdon JM Jr.

Curr Opin Genet Dev. 1998 Dec;8(6):637-48. Review.

PMID:
9914210

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