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Items: 25

1.

Erratum to: Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies.

Atkinson JA, Lobet G, Noll M, Meyer PE, Griffiths M, Wells DM.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy043. No abstract available.

2.

EZ-Root-VIS: A Software Pipeline for the Rapid Analysis and Visual Reconstruction of Root System Architecture.

Shahzad Z, Kellermeier F, Armstrong EM, Rogers S, Lobet G, Amtmann A, Hills A.

Plant Physiol. 2018 Aug;177(4):1368-1381. doi: 10.1104/pp.18.00217. Epub 2018 Jun 12.

PMID:
29895611
3.

Impact of crop residue management on crop production and soil chemistry after seven years of crop rotation in temperate climate, loamy soils.

Hiel MP, Barbieux S, Pierreux J, Olivier C, Lobet G, Roisin C, Garré S, Colinet G, Bodson B, Dumont B.

PeerJ. 2018 May 23;6:e4836. doi: 10.7717/peerj.4836. eCollection 2018.

4.

A New Phenotyping Pipeline Reveals Three Types of Lateral Roots and a Random Branching Pattern in Two Cereals.

Passot S, Moreno-Ortega B, Moukouanga D, Balsera C, Guyomarc'h S, Lucas M, Lobet G, Laplaze L, Muller B, Guédon Y.

Plant Physiol. 2018 Jul;177(3):896-910. doi: 10.1104/pp.17.01648. Epub 2018 May 11.

5.

archiDART v3.0: A new data analysis pipeline allowing the topological analysis of plant root systems.

Delory BM, Li M, Topp CN, Lobet G.

F1000Res. 2018 Jan 8;7:22. doi: 10.12688/f1000research.13541.1. eCollection 2018.

6.

CRootBox: a structural-functional modelling framework for root systems.

Schnepf A, Leitner D, Landl M, Lobet G, Mai TH, Morandage S, Sheng C, Zörner M, Vanderborght J, Vereecken H.

Ann Bot. 2018 Apr 18;121(5):1033-1053. doi: 10.1093/aob/mcx221.

PMID:
29432520
7.

Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies.

Atkinson JA, Lobet G, Noll M, Meyer PE, Griffiths M, Wells DM.

Gigascience. 2017 Oct 1;6(10):1-7. doi: 10.1093/gigascience/gix084. Erratum in: Gigascience. 2018 Jul 1;7(7):.

8.

Image Analysis in Plant Sciences: Publish Then Perish.

Lobet G.

Trends Plant Sci. 2017 Jul;22(7):559-566. doi: 10.1016/j.tplants.2017.05.002. Epub 2017 May 29. Review.

PMID:
28571940
9.

Using a Structural Root System Model to Evaluate and Improve the Accuracy of Root Image Analysis Pipelines.

Lobet G, Koevoets IT, Noll M, Meyer PE, Tocquin P, Pagès L, Périlleux C.

Front Plant Sci. 2017 Apr 3;8:447. doi: 10.3389/fpls.2017.00447. eCollection 2017.

10.

An evaluation of inexpensive methods for root image acquisition when using rhizotrons.

Mohamed A, Monnier Y, Mao Z, Lobet G, Maeght JL, Ramel M, Stokes A.

Plant Methods. 2017 Mar 7;13:11. doi: 10.1186/s13007-017-0160-z. eCollection 2017.

11.

Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana.

Bouché F, D'Aloia M, Tocquin P, Lobet G, Detry N, Périlleux C.

Sci Rep. 2016 Jun 29;6:29042. doi: 10.1038/srep29042.

12.

Environmental Control of Root System Biology.

Rellán-Álvarez R, Lobet G, Dinneny JR.

Annu Rev Plant Biol. 2016 Apr 29;67:619-42. doi: 10.1146/annurev-arplant-043015-111848. Epub 2016 Feb 22. Review.

13.

FLOR-ID: an interactive database of flowering-time gene networks in Arabidopsis thaliana.

Bouché F, Lobet G, Tocquin P, Périlleux C.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1167-71. doi: 10.1093/nar/gkv1054. Epub 2015 Oct 17.

14.

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems.

Rellán-Álvarez R, Lobet G, Lindner H, Pradier PL, Sebastian J, Yee MC, Geng Y, Trontin C, LaRue T, Schrager-Lavelle A, Haney CH, Nieu R, Maloof J, Vogel JP, Dinneny JR.

Elife. 2015 Aug 19;4. doi: 10.7554/eLife.07597.

15.

"Rhizoponics": a novel hydroponic rhizotron for root system analyses on mature Arabidopsis thaliana plants.

Mathieu L, Lobet G, Tocquin P, Périlleux C.

Plant Methods. 2015 Jan 23;11:3. doi: 10.1186/s13007-015-0046-x. eCollection 2015.

16.

Root system markup language: toward a unified root architecture description language.

Lobet G, Pound MP, Diener J, Pradal C, Draye X, Godin C, Javaux M, Leitner D, Meunier F, Nacry P, Pridmore TP, Schnepf A.

Plant Physiol. 2015 Mar;167(3):617-27. doi: 10.1104/pp.114.253625. Epub 2015 Jan 22.

17.

Inflorescence development in tomato: gene functions within a zigzag model.

Périlleux C, Lobet G, Tocquin P.

Front Plant Sci. 2014 Mar 31;5:121. doi: 10.3389/fpls.2014.00121. eCollection 2014.

18.

Plant water uptake in drying soils.

Lobet G, Couvreur V, Meunier F, Javaux M, Draye X.

Plant Physiol. 2014 Apr;164(4):1619-27. doi: 10.1104/pp.113.233486. Epub 2014 Feb 10. Review.

19.

Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphere.

Hill K, Porco S, Lobet G, Zappala S, Mooney S, Draye X, Bennett MJ.

Plant Physiol. 2013 Dec;163(4):1487-503. doi: 10.1104/pp.113.227215. Epub 2013 Oct 18. Review.

20.

An online database for plant image analysis software tools.

Lobet G, Draye X, Périlleux C.

Plant Methods. 2013 Oct 9;9(1):38. doi: 10.1186/1746-4811-9-38.

21.

Impact of cadmium and zinc on root system of Lolium perenne and Trifolium repens.

Lambrechts T, Lequeue G, Lobet G, Lutts S.

Commun Agric Appl Biol Sci. 2013;78(1):19-24. No abstract available.

PMID:
23875292
22.

Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems.

Lobet G, Draye X.

Plant Methods. 2013 Jan 4;9(1):1. doi: 10.1186/1746-4811-9-1.

23.

New insights on the role of root radial hydraulic conductivity in the overall water uptake dynamics.

Lobet G, Draye X.

Commun Agric Appl Biol Sci. 2012;77(1):117-21. No abstract available.

PMID:
22558767
24.

A novel image-analysis toolbox enabling quantitative analysis of root system architecture.

Lobet G, Pagès L, Draye X.

Plant Physiol. 2011 Sep;157(1):29-39. doi: 10.1104/pp.111.179895. Epub 2011 Jul 19.

25.

Model-assisted integration of physiological and environmental constraints affecting the dynamic and spatial patterns of root water uptake from soils.

Draye X, Kim Y, Lobet G, Javaux M.

J Exp Bot. 2010 May;61(8):2145-55. doi: 10.1093/jxb/erq077. Epub 2010 May 7. Review.

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