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Items: 7

1.

A machine learning approach for somatic mutation discovery.

Wood DE, White JR, Georgiadis A, Van Emburgh B, Parpart-Li S, Mitchell J, Anagnostou V, Niknafs N, Karchin R, Papp E, McCord C, LoVerso P, Riley D, Diaz LA Jr, Jones S, Sausen M, Velculescu VE, Angiuoli SV.

Sci Transl Med. 2018 Sep 5;10(457). pii: eaar7939. doi: 10.1126/scitranslmed.aar7939.

2.

p53 binding sites in normal and cancer cells are characterized by distinct chromatin context.

Bao F, LoVerso PR, Fisk JN, Zhurkin VB, Cui F.

Cell Cycle. 2017;16(21):2073-2085. doi: 10.1080/15384101.2017.1361064. Epub 2017 Sep 28.

3.

Collaborating to Compete: Blood Profiling Atlas in Cancer (BloodPAC) Consortium.

Grossman RL, Abel B, Angiuoli S, Barrett JC, Bassett D, Bramlett K, Blumenthal GM, Carlsson A, Cortese R, DiGiovanna J, Davis-Dusenbery B, Dittamore R, Eberhard DA, Febbo P, Fitzsimons M, Flamig Z, Godsey J, Goswami J, Gruen A, Ortuño F, Han J, Hayes D, Hicks J, Holloway D, Hovelson D, Johnson J, Juhl H, Kalamegham R, Kamal R, Kang Q, Kelloff GJ, Klozenbuecher M, Kolatkar A, Kuhn P, Langone K, Leary R, Loverso P, Manmathan H, Martin AM, Martini J, Miller D, Mitchell M, Morgan T, Mulpuri R, Nguyen T, Otto G, Pathak A, Peters E, Philip R, Posadas E, Reese D, Reese MG, Robinson D, Dei Rossi A, Sakul H, Schageman J, Singh S, Scher HI, Schmitt K, Silvestro A, Simmons J, Simmons T, Sislow J, Talasaz A, Tang P, Tewari M, Tomlins S, Toukhy H, Tseng HR, Tuck M, Tzou A, Vinson J, Wang Y, Wells W, Welsh A, Wilbanks J, Wolf J, Young L, Lee J, Leiman LC.

Clin Pharmacol Ther. 2017 May;101(5):589-592. doi: 10.1002/cpt.666. Epub 2017 Apr 12. Review.

4.

Cell type-specific transcriptome profiling in mammalian brains.

LoVerso PR, Cui F.

Front Biosci (Landmark Ed). 2016 Jun 1;21:973-85. Review.

5.

A Computational Pipeline for Cross-Species Analysis of RNA-seq Data Using R and Bioconductor.

LoVerso PR, Cui F.

Bioinform Biol Insights. 2015 Dec 2;9:165-74. doi: 10.4137/BBI.S30884. eCollection 2015.

6.

Cross-species Transcriptomic Comparison of In Vitro and In Vivo Mammalian Neural Cells.

LoVerso PR, Wachter CM, Cui F.

Bioinform Biol Insights. 2015 Nov 25;9:153-64. doi: 10.4137/BBI.S33124. eCollection 2015.

7.

Prediction of nucleosome rotational positioning in yeast and human genomes based on sequence-dependent DNA anisotropy.

Cui F, Chen L, LoVerso PR, Zhurkin VB.

BMC Bioinformatics. 2014 Sep 22;15:313. doi: 10.1186/1471-2105-15-313.

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