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Items: 1 to 50 of 89

1.

Aerosol and Surface Stability of SARS-CoV-2 as Compared with SARS-CoV-1.

van Doremalen N, Bushmaker T, Morris DH, Holbrook MG, Gamble A, Williamson BN, Tamin A, Harcourt JL, Thornburg NJ, Gerber SI, Lloyd-Smith JO, de Wit E, Munster VJ.

N Engl J Med. 2020 Mar 17. doi: 10.1056/NEJMc2004973. [Epub ahead of print] No abstract available.

PMID:
32182409
2.

Estimated effectiveness of symptom and risk screening to prevent the spread of COVID-19.

Gostic K, Gomez AC, Mummah RO, Kucharski AJ, Lloyd-Smith JO.

Elife. 2020 Feb 24;9. pii: e55570. doi: 10.7554/eLife.55570.

3.

Childhood immune imprinting to influenza A shapes birth year-specific risk during seasonal H1N1 and H3N2 epidemics.

Gostic KM, Bridge R, Brady S, Viboud C, Worobey M, Lloyd-Smith JO.

PLoS Pathog. 2019 Dec 19;15(12):e1008109. doi: 10.1371/journal.ppat.1008109. eCollection 2019 Dec.

4.

Improving risk assessment of the emergence of novel influenza A viruses by incorporating environmental surveillance.

Pepin KM, Hopken MW, Shriner SA, Spackman E, Abdo Z, Parrish C, Riley S, Lloyd-Smith JO, Piaggio AJ.

Philos Trans R Soc Lond B Biol Sci. 2019 Sep 30;374(1782):20180346. doi: 10.1098/rstb.2018.0346. Epub 2019 Aug 12.

PMID:
31401963
5.

Dynamic and integrative approaches to understanding pathogen spillover.

Becker DJ, Washburne AD, Faust CL, Pulliam JRC, Mordecai EA, Lloyd-Smith JO, Plowright RK.

Philos Trans R Soc Lond B Biol Sci. 2019 Sep 30;374(1782):20190014. doi: 10.1098/rstb.2019.0014. Epub 2019 Aug 12. No abstract available.

6.

Mechanistic dose-response modelling of animal challenge data shows that intact skin is a crucial barrier to leptospiral infection.

Gostic KM, Wunder EA Jr, Bisht V, Hamond C, Julian TR, Ko AI, Lloyd-Smith JO.

Philos Trans R Soc Lond B Biol Sci. 2019 Sep 30;374(1782):20190367. doi: 10.1098/rstb.2019.0367. Epub 2019 Aug 12.

PMID:
31401957
7.

Onward transmission of viruses: how do viruses emerge to cause epidemics after spillover?

Wasik BR, de Wit E, Munster V, Lloyd-Smith JO, Martinez-Sobrido L, Parrish CR.

Philos Trans R Soc Lond B Biol Sci. 2019 Sep 30;374(1782):20190017. doi: 10.1098/rstb.2019.0017. Epub 2019 Aug 12.

PMID:
31401954
8.

Cross-species pathogen spillover across ecosystem boundaries: mechanisms and theory.

Borremans B, Faust C, Manlove KR, Sokolow SH, Lloyd-Smith JO.

Philos Trans R Soc Lond B Biol Sci. 2019 Sep 30;374(1782):20180344. doi: 10.1098/rstb.2018.0344. Epub 2019 Aug 12.

PMID:
31401953
9.

Ten simple rules for giving an effective academic job talk.

Sura SA, Smith LL, Ambrose MR, Amorim CEG, Beichman AC, Gomez ACR, Juhn M, Kandlikar GS, Miller JS, Mooney J, Mummah RO, Lohmueller KE, Lloyd-Smith JO.

PLoS Comput Biol. 2019 Jul 25;15(7):e1007163. doi: 10.1371/journal.pcbi.1007163. eCollection 2019 Jul. No abstract available.

10.

Fogarty International Center collaborative networks in infectious disease modeling: Lessons learnt in research and capacity building.

Nelson MI, Lloyd-Smith JO, Simonsen L, Rambaut A, Holmes EC, Chowell G, Miller MA, Spiro DJ, Grenfell B, Viboud C.

Epidemics. 2019 Mar;26:116-127. doi: 10.1016/j.epidem.2018.10.004. Epub 2018 Oct 23. Review.

11.

HYPERMUCOVISCOUS KLEBSIELLA PNEUMONIAE ISOLATES FROM STRANDED AND WILD-CAUGHT MARINE MAMMALS OF THE US PACIFIC COAST: PREVALENCE, PHENOTYPE, AND GENOTYPE.

Whitaker DM, Reichley SR, Griffin MJ, Prager K, Richey CA, Kenelty KV, Stevens BN, Lloyd-Smith JO, Johnson CK, Duignan P, Johnson S, Rios C, DeLong R, Halaska B, Rust L, Byrne BA, Struve C, Barnum S, Soto E.

J Wildl Dis. 2018 Oct;54(4):659-670. doi: 10.7589/2017-07-178. Epub 2018 May 7.

PMID:
29733766
12.

Varicella Coinfection in Patients with Active Monkeypox in the Democratic Republic of the Congo.

Hoff NA, Morier DS, Kisalu NK, Johnston SC, Doshi RH, Hensley LE, Okitolonda-Wemakoy E, Muyembe-Tamfum JJ, Lloyd-Smith JO, Rimoin AW.

Ecohealth. 2017 Sep;14(3):564-574. doi: 10.1007/s10393-017-1266-5. Epub 2017 Sep 11.

PMID:
28894977
13.

Infectious diseases: Predictions of virus spillover across species.

Lloyd-Smith JO.

Nature. 2017 Jun 29;546(7660):603-604. doi: 10.1038/nature23088. Epub 2017 Jun 21. No abstract available.

PMID:
28636591
14.

Pathways to zoonotic spillover.

Plowright RK, Parrish CR, McCallum H, Hudson PJ, Ko AI, Graham AL, Lloyd-Smith JO.

Nat Rev Microbiol. 2017 Aug;15(8):502-510. doi: 10.1038/nrmicro.2017.45. Epub 2017 May 30. Review.

15.

Maternal antibodies' role in immunity-Response.

Gostic KM, Ambrose M, Worobey M, Lloyd-Smith JO.

Science. 2017 Feb 17;355(6326):705. doi: 10.1126/science.aam7389. No abstract available.

PMID:
28209868
16.

Detecting signals of chronic shedding to explain pathogen persistence: Leptospira interrogans in California sea lions.

Buhnerkempe MG, Prager KC, Strelioff CC, Greig DJ, Laake JL, Melin SR, DeLong RL, Gulland FM, Lloyd-Smith JO.

J Anim Ecol. 2017 May;86(3):460-472. doi: 10.1111/1365-2656.12656. Epub 2017 Apr 3.

PMID:
28207932
17.

Inferring infection hazard in wildlife populations by linking data across individual and population scales.

Pepin KM, Kay SL, Golas BD, Shriner SS, Gilbert AT, Miller RS, Graham AL, Riley S, Cross PC, Samuel MD, Hooten MB, Hoeting JA, Lloyd-Smith JO, Webb CT, Buhnerkempe MG.

Ecol Lett. 2017 Mar;20(3):275-292. doi: 10.1111/ele.12732. Epub 2017 Jan 16.

PMID:
28090753
18.

Evolution of a Disease Surveillance System: An Increase in Reporting of Human Monkeypox Disease in the Democratic Republic of the Congo, 2001-2013.

Hoff NA, Doshi RH, Colwell B, Kebela-Illunga B, Mukadi P, Mossoko M, Spencer D, Muyembe-Tamfum JJ, Okitolonda-Wemakoy E, Lloyd-Smith J, Rimoin AW.

Int J Trop Dis Health. 2017;25(2). pii: IJTDH.35885. doi: 10.9734/IJTDH/2017/35885. Epub 2017 Aug 28.

19.

Epidemiological models to control the spread of information in marine mammals.

Schakner ZA, Buhnerkempe MG, Tennis MJ, Stansell RJ, van der Leeuw BK, Lloyd-Smith JO, Blumstein DT.

Proc Biol Sci. 2016 Dec 14;283(1844). pii: 20162037.

20.

Potent protection against H5N1 and H7N9 influenza via childhood hemagglutinin imprinting.

Gostic KM, Ambrose M, Worobey M, Lloyd-Smith JO.

Science. 2016 Nov 11;354(6313):722-726.

21.

Viral factors in influenza pandemic risk assessment.

Lipsitch M, Barclay W, Raman R, Russell CJ, Belser JA, Cobey S, Kasson PM, Lloyd-Smith JO, Maurer-Stroh S, Riley S, Beauchemin CA, Bedford T, Friedrich TC, Handel A, Herfst S, Murcia PR, Roche B, Wilke CO, Russell CA.

Elife. 2016 Nov 11;5. pii: e18491. doi: 10.7554/eLife.18491.

22.

Adaptation in protein fitness landscapes is facilitated by indirect paths.

Wu NC, Dai L, Olson CA, Lloyd-Smith JO, Sun R.

Elife. 2016 Jul 8;5. pii: e16965. doi: 10.7554/eLife.16965.

23.

Exposure to viral and bacterial pathogens among Soay sheep (Ovis aries) of the St Kilda archipelago.

Graham AL, Nussey DH, Lloyd-Smith JO, Longbottom D, Maley M, Pemberton JM, Pilkington JG, Prager KC, Smith L, Watt KA, Wilson K, McNEILLY TN, BrĂ¼lisauer F.

Epidemiol Infect. 2016 Jul;144(9):1879-88. doi: 10.1017/S0950268816000017. Epub 2016 Feb 1.

24.

Mapping influenza transmission in the ferret model to transmission in humans.

Buhnerkempe MG, Gostic K, Park M, Ahsan P, Belser JA, Lloyd-Smith JO.

Elife. 2015 Sep 2;4. doi: 10.7554/eLife.07969.

25.

Rational Design and Adaptive Management of Combination Therapies for Hepatitis C Virus Infection.

Ke R, Loverdo C, Qi H, Sun R, Lloyd-Smith JO.

PLoS Comput Biol. 2015 Jun 30;11(6):e1004040. doi: 10.1371/journal.pcbi.1004040. eCollection 2015 Jun.

26.

Measurably evolving pathogens in the genomic era.

Biek R, Pybus OG, Lloyd-Smith JO, Didelot X.

Trends Ecol Evol. 2015 Jun;30(6):306-13. doi: 10.1016/j.tree.2015.03.009. Epub 2015 Apr 14. Review.

27.

Challenges in modelling infectious disease dynamics: preface.

Lloyd-Smith JO, Mollison D, Metcalf CJ, Klepac P, Heesterbeek JA.

Epidemics. 2015 Mar;10:iii-iv. doi: 10.1016/j.epidem.2015.02.001. Epub 2015 Feb 11. No abstract available.

28.

Seven challenges in modeling pathogen dynamics within-host and across scales.

Gog JR, Pellis L, Wood JL, McLean AR, Arinaminpathy N, Lloyd-Smith JO.

Epidemics. 2015 Mar;10:45-8. doi: 10.1016/j.epidem.2014.09.009. Epub 2014 Sep 30.

29.

Five challenges in evolution and infectious diseases.

Metcalf CJ, Birger RB, Funk S, Kouyos RD, Lloyd-Smith JO, Jansen VA.

Epidemics. 2015 Mar;10:40-4. doi: 10.1016/j.epidem.2014.12.003. Epub 2014 Dec 18.

30.

Nine challenges in modelling the emergence of novel pathogens.

Lloyd-Smith JO, Funk S, McLean AR, Riley S, Wood JL.

Epidemics. 2015 Mar;10:35-9. doi: 10.1016/j.epidem.2014.09.002. Epub 2014 Sep 19.

31.

Eight challenges in modelling disease ecology in multi-host, multi-agent systems.

Buhnerkempe MG, Roberts MG, Dobson AP, Heesterbeek H, Hudson PJ, Lloyd-Smith JO.

Epidemics. 2015 Mar;10:26-30. doi: 10.1016/j.epidem.2014.10.001. Epub 2014 Dec 9.

32.

Modeling infectious disease dynamics in the complex landscape of global health.

Heesterbeek H, Anderson RM, Andreasen V, Bansal S, De Angelis D, Dye C, Eames KT, Edmunds WJ, Frost SD, Funk S, Hollingsworth TD, House T, Isham V, Klepac P, Lessler J, Lloyd-Smith JO, Metcalf CJ, Mollison D, Pellis L, Pulliam JR, Roberts MG, Viboud C; Isaac Newton Institute IDD Collaboration.

Science. 2015 Mar 13;347(6227):aaa4339. doi: 10.1126/science.aaa4339. Review.

33.

Effectiveness of traveller screening for emerging pathogens is shaped by epidemiology and natural history of infection.

Gostic KM, Kucharski AJ, Lloyd-Smith JO.

Elife. 2015 Feb 19;4. doi: 10.7554/eLife.05564.

34.

Antibiotic Efficacy in Eliminating Leptospiruria in California Sea Lions (Zalophus californianus) Stranding with Leptospirosis.

Prager KC, Alt DP, Buhnerkempe MG, Greig DJ, Galloway RL, Wu Q, Gulland FMD, Lloyd-Smith JO.

Aquat Mamm. 2015;41(2):203-212. doi: 10.1578/AM.41.2.2015.203. Epub 2015 May 26.

35.

Improving pandemic influenza risk assessment.

Russell CA, Kasson PM, Donis RO, Riley S, Dunbar J, Rambaut A, Asher J, Burke S, Davis CT, Garten RJ, Gnanakaran S, Hay SI, Herfst S, Lewis NS, Lloyd-Smith JO, Macken CA, Maurer-Stroh S, Neuhaus E, Parrish CR, Pepin KM, Shepard SS, Smith DL, Suarez DL, Trock SC, Widdowson MA, George DB, Lipsitch M, Bloom JD.

Elife. 2014 Oct 16;3:e03883. doi: 10.7554/eLife.03883.

36.

Development of a real-time PCR for the detection of pathogenic Leptospira spp. in California sea lions.

Wu Q, Prager KC, Goldstein T, Alt DP, Galloway RL, Zuerner RL, Lloyd-Smith JO, Schwacke L.

Dis Aquat Organ. 2014 Aug 11;110(3):165-72. doi: 10.3354/dao02752.

37.

The effect of immunodeficiency on the evolution of virulence: an experimental test with the rodent malaria Plasmodium chabaudi.

Barclay VC, Kennedy DA, Weaver VC, Sim D, Lloyd-Smith JO, Read AF.

Am Nat. 2014 Aug;184 Suppl 1:S47-57. doi: 10.1086/676887. Epub 2014 Jul 15.

PMID:
25061677
38.

Identifying postelimination trends for the introduction and transmissibility of measles in the United States.

Blumberg S, Enanoria WT, Lloyd-Smith JO, Lietman TM, Porco TC.

Am J Epidemiol. 2014 Jun 1;179(11):1375-82. doi: 10.1093/aje/kwu068. Epub 2014 Apr 30.

39.

Assembling evidence for identifying reservoirs of infection.

Viana M, Mancy R, Biek R, Cleaveland S, Cross PC, Lloyd-Smith JO, Haydon DT.

Trends Ecol Evol. 2014 May;29(5):270-9. doi: 10.1016/j.tree.2014.03.002. Epub 2014 Apr 11.

40.

A quantitative high-resolution genetic profile rapidly identifies sequence determinants of hepatitis C viral fitness and drug sensitivity.

Qi H, Olson CA, Wu NC, Ke R, Loverdo C, Chu V, Truong S, Remenyi R, Chen Z, Du Y, Su SY, Al-Mawsawi LQ, Wu TT, Chen SH, Lin CY, Zhong W, Lloyd-Smith JO, Sun R.

PLoS Pathog. 2014 Apr 10;10(4):e1004064. doi: 10.1371/journal.ppat.1004064. eCollection 2014 Apr.

41.

Minimizing the threat of pandemic emergence from avian influenza in poultry systems.

Pepin KM, Lloyd-Smith JO, Webb CT, Holcomb K, Zhu H, Guan Y, Riley S.

BMC Infect Dis. 2013 Dec 16;13:592. doi: 10.1186/1471-2334-13-592.

42.

Modelling clinical data shows active tissue concentration of daclatasvir is 10-fold lower than its plasma concentration.

Ke R, Loverdo C, Qi H, Olson CA, Wu NC, Sun R, Lloyd-Smith JO.

J Antimicrob Chemother. 2014 Mar;69(3):724-7. doi: 10.1093/jac/dkt423. Epub 2013 Oct 29.

43.

Comparing methods for estimating R0 from the size distribution of subcritical transmission chains.

Blumberg S, Lloyd-Smith JO.

Epidemics. 2013 Sep;5(3):131-45. doi: 10.1016/j.epidem.2013.05.002. Epub 2013 Jun 3.

44.

Coadaptive stability of interfering particles with HIV-1 when there is an evolutionary conflict.

Ke R, Lloyd-Smith JO.

J Virol. 2013 Sep;87(17):9959. doi: 10.1128/JVI.00705-13. No abstract available.

45.

Pathogen-host associations and predicted range shifts of human monkeypox in response to climate change in central Africa.

Thomassen HA, Fuller T, Asefi-Najafabady S, Shiplacoff JA, Mulembakani PM, Blumberg S, Johnston SC, Kisalu NK, Kinkela TL, Fair JN, Wolfe ND, Shongo RL, LeBreton M, Meyer H, Wright LL, Muyembe JJ, Buermann W, Okitolonda E, Hensley LE, Lloyd-Smith JO, Smith TB, Rimoin AW.

PLoS One. 2013 Jul 31;8(7):e66071. doi: 10.1371/journal.pone.0066071. Print 2013.

46.

Evolutionary invasion and escape in the presence of deleterious mutations.

Loverdo C, Lloyd-Smith JO.

PLoS One. 2013 Jul 17;8(7):e68179. doi: 10.1371/journal.pone.0068179. Print 2013.

47.

Vacated niches, competitive release and the community ecology of pathogen eradication.

Lloyd-Smith JO.

Philos Trans R Soc Lond B Biol Sci. 2013 Jun 24;368(1623):20120150. doi: 10.1098/rstb.2012.0150. Print 2013 Aug 5.

48.

Intergenerational phenotypic mixing in viral evolution.

Loverdo C, Lloyd-Smith JO.

Evolution. 2013 Jun;67(6):1815-22. doi: 10.1111/evo.12048. Epub 2013 Feb 4.

49.

Inference of R(0) and transmission heterogeneity from the size distribution of stuttering chains.

Blumberg S, Lloyd-Smith JO.

PLoS Comput Biol. 2013;9(5):e1002993. doi: 10.1371/journal.pcbi.1002993. Epub 2013 May 2.

50.

Inferring patterns of influenza transmission in swine from multiple streams of surveillance data.

Strelioff CC, Vijaykrishna D, Riley S, Guan Y, Peiris JS, Lloyd-Smith JO.

Proc Biol Sci. 2013 May 8;280(1762):20130872. doi: 10.1098/rspb.2013.0872. Print 2013 Jul 7.

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