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Items: 1 to 50 of 53

1.

Race in a genome: long read sequencing, ethnicity-specific reference genomes and the shifting horizon of race.

Kowal E, Llamas B.

J Anthropol Sci. 2019 Oct 7;97. doi: 10.4436/JASS.97004. [Epub ahead of print]

2.

Widespread male sex bias in mammal fossil and museum collections.

Gower G, Fenderson LE, Salis AT, Helgen KM, van Loenen AL, Heiniger H, Hofman-Kamińska E, Kowalczyk R, Mitchell KJ, Llamas B, Cooper A.

Proc Natl Acad Sci U S A. 2019 Sep 17;116(38):19019-19024. doi: 10.1073/pnas.1903275116. Epub 2019 Sep 3.

PMID:
31481609
3.

Correction: Low-cost cross-taxon enrichment of mitochondrial DNA using in-house synthesised RNA probes.

Richards SM, Hovhannisyan N, Gilliham M, Ingram J, Skadhauge B, Heiniger H, Llamas B, Mitchell KJ, Meachen J, Fincher GB, Austin JJ, Cooper A.

PLoS One. 2019 Feb 27;14(2):e0213296. doi: 10.1371/journal.pone.0213296. eCollection 2019.

4.

Low-cost cross-taxon enrichment of mitochondrial DNA using in-house synthesised RNA probes.

Richards SM, Hovhannisyan N, Gilliham M, Ingram J, Skadhauge B, Heiniger H, Llamas B, Mitchell KJ, Meachen J, Fincher GB, Austin JJ, Cooper A.

PLoS One. 2019 Feb 4;14(2):e0209499. doi: 10.1371/journal.pone.0209499. eCollection 2019. Erratum in: PLoS One. 2019 Feb 27;14(2):e0213296.

5.

Reconstructing the Deep Population History of Central and South America.

Posth C, Nakatsuka N, Lazaridis I, Skoglund P, Mallick S, Lamnidis TC, Rohland N, Nägele K, Adamski N, Bertolini E, Broomandkhoshbacht N, Cooper A, Culleton BJ, Ferraz T, Ferry M, Furtwängler A, Haak W, Harkins K, Harper TK, Hünemeier T, Lawson AM, Llamas B, Michel M, Nelson E, Oppenheimer J, Patterson N, Schiffels S, Sedig J, Stewardson K, Talamo S, Wang CC, Hublin JJ, Hubbe M, Harvati K, Nuevo Delaunay A, Beier J, Francken M, Kaulicke P, Reyes-Centeno H, Rademaker K, Trask WR, Robinson M, Gutierrez SM, Prufer KM, Salazar-García DC, Chim EN, Müller Plumm Gomes L, Alves ML, Liryo A, Inglez M, Oliveira RE, Bernardo DV, Barioni A, Wesolowski V, Scheifler NA, Rivera MA, Plens CR, Messineo PG, Figuti L, Corach D, Scabuzzo C, Eggers S, DeBlasis P, Reindel M, Méndez C, Politis G, Tomasto-Cagigao E, Kennett DJ, Strauss A, Fehren-Schmitz L, Krause J, Reich D.

Cell. 2018 Nov 15;175(5):1185-1197.e22. doi: 10.1016/j.cell.2018.10.027. Epub 2018 Nov 8.

6.

Molecular resolution to a morphological controversy: The case of North American fossil muskoxen Bootherium and Symbos.

Bover P, Llamas B, Thomson VA, Pons J, Cooper A, Mitchell KJ.

Mol Phylogenet Evol. 2018 Dec;129:70-76. doi: 10.1016/j.ympev.2018.08.008. Epub 2018 Aug 16.

PMID:
30121342
7.

Current evidence allows multiple models for the peopling of the Americas.

Potter BA, Baichtal JF, Beaudoin AB, Fehren-Schmitz L, Haynes CV, Holliday VT, Holmes CE, Ives JW, Kelly RL, Llamas B, Malhi RS, Miller DS, Reich D, Reuther JD, Schiffels S, Surovell TA.

Sci Adv. 2018 Aug 8;4(8):eaat5473. doi: 10.1126/sciadv.aat5473. eCollection 2018 Aug. Review.

8.

Molecular phylogenetics supports the origin of an endemic Balearic shrew lineage (Nesiotites) coincident with the Messinian Salinity Crisis.

Bover P, Mitchell KJ, Llamas B, Rofes J, Thomson VA, Cuenca-Bescós G, Alcover JA, Cooper A, Pons J.

Mol Phylogenet Evol. 2018 Aug;125:188-195. doi: 10.1016/j.ympev.2018.03.028. Epub 2018 Mar 31.

PMID:
29608962
9.

Arrival routes of first Americans uncertain.

Potter BA, Beaudoin AB, Haynes CV, Holliday VT, Holmes CE, Ives JW, Kelly R, Llamas B, Malhi R, Miller S, Reich D, Reuther JD, Schiffels S, Surovell T.

Science. 2018 Mar 16;359(6381):1224-1225. doi: 10.1126/science.aar8233. No abstract available.

PMID:
29590067
10.

Genome of the Tasmanian tiger provides insights into the evolution and demography of an extinct marsupial carnivore.

Feigin CY, Newton AH, Doronina L, Schmitz J, Hipsley CA, Mitchell KJ, Gower G, Llamas B, Soubrier J, Heider TN, Menzies BR, Cooper A, O'Neill RJ, Pask AJ.

Nat Ecol Evol. 2018 Jan;2(1):182-192. doi: 10.1038/s41559-017-0417-y. Epub 2017 Dec 11.

PMID:
29230027
11.

Parallel palaeogenomic transects reveal complex genetic history of early European farmers.

Lipson M, Szécsényi-Nagy A, Mallick S, Pósa A, Stégmár B, Keerl V, Rohland N, Stewardson K, Ferry M, Michel M, Oppenheimer J, Broomandkhoshbacht N, Harney E, Nordenfelt S, Llamas B, Gusztáv Mende B, Köhler K, Oross K, Bondár M, Marton T, Osztás A, Jakucs J, Paluch T, Horváth F, Csengeri P, Koós J, Sebők K, Anders A, Raczky P, Regenye J, Barna JP, Fábián S, Serlegi G, Toldi Z, Gyöngyvér Nagy E, Dani J, Molnár E, Pálfi G, Márk L, Melegh B, Bánfai Z, Domboróczki L, Fernández-Eraso J, Antonio Mujika-Alustiza J, Alonso Fernández C, Jiménez Echevarría J, Bollongino R, Orschiedt J, Schierhold K, Meller H, Cooper A, Burger J, Bánffy E, Alt KW, Lalueza-Fox C, Haak W, Reich D.

Nature. 2017 Nov 16;551(7680):368-372. doi: 10.1038/nature24476. Epub 2017 Nov 8.

12.

Megafaunal isotopes reveal role of increased moisture on rangeland during late Pleistocene extinctions.

Rabanus-Wallace MT, Wooller MJ, Zazula GD, Shute E, Jahren AH, Kosintsev P, Burns JA, Breen J, Llamas B, Cooper A.

Nat Ecol Evol. 2017 Apr 18;1(5):125. doi: 10.1038/s41559-017-0125.

PMID:
28812683
13.

Consent: Data-sharing for indigenous peoples.

Kowal E, Llamas B, Tishkoff S.

Nature. 2017 Jun 21;546(7659):474. doi: 10.1038/546474a. No abstract available. Erratum in: Nature. 2017 Aug 9;548(7666):158.

PMID:
28640268
14.

Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia.

Tobler R, Rohrlach A, Soubrier J, Bover P, Llamas B, Tuke J, Bean N, Abdullah-Highfold A, Agius S, O'Donoghue A, O'Loughlin I, Sutton P, Zilio F, Walshe K, Williams AN, Turney CSM, Williams M, Richards SM, Mitchell RJ, Kowal E, Stephen JR, Williams L, Haak W, Cooper A.

Nature. 2017 Apr 13;544(7649):180-184. doi: 10.1038/nature21416. Epub 2017 Mar 8.

PMID:
28273067
15.

Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus.

Weyrich LS, Duchene S, Soubrier J, Arriola L, Llamas B, Breen J, Morris AG, Alt KW, Caramelli D, Dresely V, Farrell M, Farrer AG, Francken M, Gully N, Haak W, Hardy K, Harvati K, Held P, Holmes EC, Kaidonis J, Lalueza-Fox C, de la Rasilla M, Rosas A, Semal P, Soltysiak A, Townsend G, Usai D, Wahl J, Huson DH, Dobney K, Cooper A.

Nature. 2017 Apr 20;544(7650):357-361. doi: 10.1038/nature21674. Epub 2017 Mar 8.

PMID:
28273061
16.

Human evolution: a tale from ancient genomes.

Llamas B, Willerslev E, Orlando L.

Philos Trans R Soc Lond B Biol Sci. 2017 Feb 5;372(1713). pii: 20150484. Review.

17.

Early cave art and ancient DNA record the origin of European bison.

Soubrier J, Gower G, Chen K, Richards SM, Llamas B, Mitchell KJ, Ho SY, Kosintsev P, Lee MS, Baryshnikov G, Bollongino R, Bover P, Burger J, Chivall D, Crégut-Bonnoure E, Decker JE, Doronichev VB, Douka K, Fordham DA, Fontana F, Fritz C, Glimmerveen J, Golovanova LV, Groves C, Guerreschi A, Haak W, Higham T, Hofman-Kamińska E, Immel A, Julien MA, Krause J, Krotova O, Langbein F, Larson G, Rohrlach A, Scheu A, Schnabel RD, Taylor JF, Tokarska M, Tosello G, van der Plicht J, van Loenen A, Vigne JD, Wooley O, Orlando L, Kowalczyk R, Shapiro B, Cooper A.

Nat Commun. 2016 Oct 18;7:13158. doi: 10.1038/ncomms13158.

18.

The origin and phylogenetic relationships of the New Zealand ravens.

Scofield RP, Mitchell KJ, Wood JR, De Pietri VL, Jarvie S, Llamas B, Cooper A.

Mol Phylogenet Evol. 2017 Jan;106:136-143. doi: 10.1016/j.ympev.2016.09.022. Epub 2016 Sep 24.

PMID:
27677399
19.

Experimental conditions improving in-solution target enrichment for ancient DNA.

Cruz-Dávalos DI, Llamas B, Gaunitz C, Fages A, Gamba C, Soubrier J, Librado P, Seguin-Orlando A, Pruvost M, Alfarhan AH, Alquraishi SA, Al-Rasheid KAS, Scheu A, Beneke N, Ludwig A, Cooper A, Willerslev E, Orlando L.

Mol Ecol Resour. 2017 May;17(3):508-522. doi: 10.1111/1755-0998.12595. Epub 2016 Sep 18.

PMID:
27566552
20.

Ancient mitochondrial genomes clarify the evolutionary history of New Zealand's enigmatic acanthisittid wrens.

Mitchell KJ, Wood JR, Llamas B, McLenachan PA, Kardailsky O, Scofield RP, Worthy TH, Cooper A.

Mol Phylogenet Evol. 2016 Sep;102:295-304. doi: 10.1016/j.ympev.2016.05.038. Epub 2016 May 31.

PMID:
27261250
21.

Ancient DNA Analysis Suggests Negligible Impact of the Wari Empire Expansion in Peru's Central Coast during the Middle Horizon.

Valverde G, Barreto Romero MI, Flores Espinoza I, Cooper A, Fehren-Schmitz L, Llamas B, Haak W.

PLoS One. 2016 Jun 1;11(6):e0155508. doi: 10.1371/journal.pone.0155508. eCollection 2016.

22.

Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas.

Llamas B, Fehren-Schmitz L, Valverde G, Soubrier J, Mallick S, Rohland N, Nordenfelt S, Valdiosera C, Richards SM, Rohrlach A, Romero MI, Espinoza IF, Cagigao ET, Jiménez LW, Makowski K, Reyna IS, Lory JM, Torrez JA, Rivera MA, Burger RL, Ceruti MC, Reinhard J, Wells RS, Politis G, Santoro CM, Standen VG, Smith C, Reich D, Ho SY, Cooper A, Haak W.

Sci Adv. 2016 Apr 1;2(4):e1501385. doi: 10.1126/sciadv.1501385. eCollection 2016 Apr.

23.

Iron Age and Anglo-Saxon genomes from East England reveal British migration history.

Schiffels S, Haak W, Paajanen P, Llamas B, Popescu E, Loe L, Clarke R, Lyons A, Mortimer R, Sayer D, Tyler-Smith C, Cooper A, Durbin R.

Nat Commun. 2016 Jan 19;7:10408. doi: 10.1038/ncomms10408.

24.

Genome-wide patterns of selection in 230 ancient Eurasians.

Mathieson I, Lazaridis I, Rohland N, Mallick S, Patterson N, Roodenberg SA, Harney E, Stewardson K, Fernandes D, Novak M, Sirak K, Gamba C, Jones ER, Llamas B, Dryomov S, Pickrell J, Arsuaga JL, de Castro JM, Carbonell E, Gerritsen F, Khokhlov A, Kuznetsov P, Lozano M, Meller H, Mochalov O, Moiseyev V, Guerra MA, Roodenberg J, Vergès JM, Krause J, Cooper A, Alt KW, Brown D, Anthony D, Lalueza-Fox C, Haak W, Pinhasi R, Reich D.

Nature. 2015 Dec 24;528(7583):499-503. doi: 10.1038/nature16152. Epub 2015 Nov 23.

25.

Differential Gene Expression Profiling of Orbital Adipose Tissue in Thyroid Orbitopathy.

Khong JJ, Wang LY, Smyth GK, McNab AA, Hardy TG, Selva D, Llamas B, Jung CH, Sharma S, Burdon KP, Ebeling PR, Craig JE.

Invest Ophthalmol Vis Sci. 2015 Oct;56(11):6438-47. doi: 10.1167/iovs.15-17185.

PMID:
26444724
26.

A Re-Appraisal of the Early Andean Human Remains from Lauricocha in Peru.

Fehren-Schmitz L, Llamas B, Lindauer S, Tomasto-Cagigao E, Kuzminsky S, Rohland N, Santos FR, Kaulicke P, Valverde G, Richards SM, Nordenfelt S, Seidenberg V, Mallick S, Cooper A, Reich D, Haak W.

PLoS One. 2015 Jun 10;10(6):e0127141. doi: 10.1371/journal.pone.0127141. eCollection 2015.

27.

Massive migration from the steppe was a source for Indo-European languages in Europe.

Haak W, Lazaridis I, Patterson N, Rohland N, Mallick S, Llamas B, Brandt G, Nordenfelt S, Harney E, Stewardson K, Fu Q, Mittnik A, Bánffy E, Economou C, Francken M, Friederich S, Pena RG, Hallgren F, Khartanovich V, Khokhlov A, Kunst M, Kuznetsov P, Meller H, Mochalov O, Moiseyev V, Nicklisch N, Pichler SL, Risch R, Rojo Guerra MA, Roth C, Szécsényi-Nagy A, Wahl J, Meyer M, Krause J, Brown D, Anthony D, Cooper A, Alt KW, Reich D.

Nature. 2015 Jun 11;522(7555):207-11. doi: 10.1038/nature14317. Epub 2015 Mar 2.

28.

Late pleistocene Australian marsupial DNA clarifies the affinities of extinct megafaunal kangaroos and wallabies.

Llamas B, Brotherton P, Mitchell KJ, Templeton JE, Thomson VA, Metcalf JL, Armstrong KN, Kasper M, Richards SM, Camens AB, Lee MS, Cooper A.

Mol Biol Evol. 2015 Mar;32(3):574-84. doi: 10.1093/molbev/msu338. Epub 2014 Dec 18.

PMID:
25526902
29.

Climate change underlies global demographic, genetic, and cultural transitions in pre-Columbian southern Peru.

Fehren-Schmitz L, Haak W, Mächtle B, Masch F, Llamas B, Cagigao ET, Sossna V, Schittek K, Isla Cuadrado J, Eitel B, Reindel M.

Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9443-8. doi: 10.1073/pnas.1403466111. Epub 2014 Jun 16.

30.

Molecular phylogeny, biogeography, and habitat preference evolution of marsupials.

Mitchell KJ, Pratt RC, Watson LN, Gibb GC, Llamas B, Kasper M, Edson J, Hopwood B, Male D, Armstrong KN, Meyer M, Hofreiter M, Austin J, Donnellan SC, Lee MS, Phillips MJ, Cooper A.

Mol Biol Evol. 2014 Sep;31(9):2322-30. doi: 10.1093/molbev/msu176. Epub 2014 May 30.

PMID:
24881050
31.

Ancient DNA reveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution.

Mitchell KJ, Llamas B, Soubrier J, Rawlence NJ, Worthy TH, Wood J, Lee MS, Cooper A.

Science. 2014 May 23;344(6186):898-900. doi: 10.1126/science.1251981.

32.

AmericaPlex26: a SNaPshot multiplex system for genotyping the main human mitochondrial founder lineages of the Americas.

Coutinho A, Valverde G, Fehren-Schmitz L, Cooper A, Barreto Romero MI, Espinoza IF, Llamas B, Haak W.

PLoS One. 2014 Mar 26;9(3):e93292. doi: 10.1371/journal.pone.0093292. eCollection 2014.

33.

Reply to Santiago-Rodriguez et al.: Was luxS really isolated from 25- to 40-million-year-old bacteria?

Weyrich LS, Llamas B, Cooper A.

FEMS Microbiol Lett. 2014 Apr;353(2):85-6. doi: 10.1111/1574-6968.12415. Epub 2014 Apr 2. No abstract available.

34.

Mitochondrial genome sequencing in Mesolithic North East Europe Unearths a new sub-clade within the broadly distributed human haplogroup C1.

Der Sarkissian C, Brotherton P, Balanovsky O, Templeton JE, Llamas B, Soubrier J, Moiseyev V, Khartanovich V, Cooper A, Haak W; Genographic Consortium.

PLoS One. 2014 Feb 4;9(2):e87612. doi: 10.1371/journal.pone.0087612. eCollection 2014.

35.

Dual Linkage of a Locus to Left Ventricular Mass and a Cardiac Gene Co-Expression Network Driven by a Chromosome Domain.

Scott-Boyer MP, Praktiknjo SD, Llamas B, Picard S, Deschepper CF.

Front Cardiovasc Med. 2014 Dec 10;1:11. doi: 10.3389/fcvm.2014.00011. eCollection 2014.

36.

Pleistocene Chinese cave hyenas and the recent Eurasian history of the spotted hyena, Crocuta crocuta.

Sheng GL, Soubrier J, Liu JY, Werdelin L, Llamas B, Thomson VA, Tuke J, Wu LJ, Hou XD, Chen QJ, Lai XL, Cooper A.

Mol Ecol. 2014 Feb;23(3):522-33. doi: 10.1111/mec.12576. Epub 2013 Dec 9.

PMID:
24320717
37.

DNA capture and next-generation sequencing can recover whole mitochondrial genomes from highly degraded samples for human identification.

Templeton JE, Brotherton PM, Llamas B, Soubrier J, Haak W, Cooper A, Austin JJ.

Investig Genet. 2013 Dec 2;4(1):26. doi: 10.1186/2041-2223-4-26.

38.

Novel effects of chromosome Y on cardiac regulation, chromatin remodeling, and neonatal programming in male mice.

Praktiknjo SD, Llamas B, Scott-Boyer MP, Picard S, Robert F, Langlais D, Haibe-Kains B, Faubert D, Silversides DW, Deschepper CF.

Endocrinology. 2013 Dec;154(12):4746-56. doi: 10.1210/en.2013-1699. Epub 2013 Oct 8.

PMID:
24105479
39.

Ancient mitochondrial genome reveals unsuspected taxonomic affinity of the extinct Chatham duck (Pachyanas chathamica) and resolves divergence times for New Zealand and sub-Antarctic brown teals.

Mitchell KJ, Wood JR, Scofield RP, Llamas B, Cooper A.

Mol Phylogenet Evol. 2014 Jan;70:420-8. doi: 10.1016/j.ympev.2013.08.017. Epub 2013 Aug 28.

PMID:
23994164
40.

High-resolution analysis of cytosine methylation in ancient DNA.

Llamas B, Holland ML, Chen K, Cropley JE, Cooper A, Suter CM.

PLoS One. 2012;7(1):e30226. doi: 10.1371/journal.pone.0030226. Epub 2012 Jan 19.

41.

Ethnic and mouse strain differences in central corneal thickness and association with pigmentation phenotype.

Dimasi DP, Hewitt AW, Kagame K, Ruvama S, Tindyebwa L, Llamas B, Kirk KA, Mitchell P, Burdon KP, Craig JE.

PLoS One. 2011;6(8):e22103. doi: 10.1371/journal.pone.0022103. Epub 2011 Aug 10.

42.
43.

Eco-efficient concretes: the effects of using recycled ceramic material from sanitary installations on the mechanical properties of concrete.

Guerra I, Vivar I, Llamas B, Juan A, Moran J.

Waste Manag. 2009 Feb;29(2):643-6. doi: 10.1016/j.wasman.2008.06.018. Epub 2008 Aug 5.

PMID:
18684611
44.

Cardiac mass and cardiomyocyte size are governed by different genetic loci on either autosomes or chromosome Y in recombinant inbred mice.

Llamas B, Bélanger S, Picard S, Deschepper CF.

Physiol Genomics. 2007 Oct 22;31(2):176-82. Epub 2007 Jun 12.

PMID:
17566079
45.

Hypertensive cardiac remodeling in males and females: from the bench to the bedside.

Deschepper CF, Llamas B.

Hypertension. 2007 Mar;49(3):401-7. Epub 2007 Jan 22. Review. No abstract available.

PMID:
17242305
46.

Genetic determinants of systolic and pulse pressure in an intercross between normotensive inbred rats.

Llamas B, Lau C, Cupples WA, Rainville ML, Souzeau E, Deschepper CF.

Hypertension. 2006 Nov;48(5):921-6. Epub 2006 Oct 2.

PMID:
17015778
47.

A genetic locus accentuates the effect of volume overload on adverse left ventricular remodeling in male and female rats.

Souzeau E, Llamas B, Bélanger S, Picard S, Deschepper CF.

Hypertension. 2006 Jan;47(1):128-33. Epub 2005 Dec 12.

PMID:
16344368
48.

Distinct QTLs are linked to cardiac left ventricular mass in a sex-specific manner in a normotensive inbred rat inter-cross.

Llamas B, Jiang Z, Rainville ML, Picard S, Deschepper CF.

Mamm Genome. 2005 Sep;16(9):700-11. Epub 2005 Oct 20.

PMID:
16245027
49.

QTL mapping for traits associated with stress neuroendocrine reactivity in rats.

Llamas B, Contesse V, Guyonnet-Duperat V, Vaudry H, Mormède P, Moisan MP.

Mamm Genome. 2005 Jul;16(7):505-15.

PMID:
16151695
50.

Identification and validation of Loci and candidate genes linked to cardiac hypertrophy.

Llamas B, Deschepper CF.

Methods Mol Med. 2005;112:321-37. Review.

PMID:
16010027

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