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Items: 1 to 50 of 66

1.

Shared molecular targets confer resistance over short and long evolutionary timescales.

Li J, Vázquez-García I, Persson K, González A, Yue JX, Barré B, Hall MN, Long A, Warringer J, Mustonen V, Liti G.

Mol Biol Evol. 2019 Jan 17. doi: 10.1093/molbev/msz006. [Epub ahead of print]

PMID:
30657986
2.

André Goffeau's imprinting on second generation yeast "genomologists".

Fairhead C, Fischer G, Liti G, Neuvéglise C, Schacherer J.

Yeast. 2019 Jan 15. doi: 10.1002/yea.3377. [Epub ahead of print]

PMID:
30645763
3.

Yeast chromosome numbers minimized using genome editing.

Liti G.

Nature. 2018 Aug;560(7718):317-318. doi: 10.1038/d41586-018-05309-4. No abstract available.

PMID:
30097656
4.

Long-read sequencing data analysis for yeasts.

Yue JX, Liti G.

Nat Protoc. 2018 Jun;13(6):1213-1231. doi: 10.1038/nprot.2018.025. Epub 2018 May 3.

PMID:
29725120
5.

Genome evolution across 1,011 Saccharomyces cerevisiae isolates.

Peter J, De Chiara M, Friedrich A, Yue JX, Pflieger D, Bergström A, Sigwalt A, Barre B, Freel K, Llored A, Cruaud C, Labadie K, Aury JM, Istace B, Lebrigand K, Barbry P, Engelen S, Lemainque A, Wincker P, Liti G, Schacherer J.

Nature. 2018 Apr;556(7701):339-344. doi: 10.1038/s41586-018-0030-5. Epub 2018 Apr 11.

PMID:
29643504
6.

Special issues for a special community.

Fischer G, Liti G.

Yeast. 2018 Jan;35(1):3. doi: 10.1002/yea.3299. No abstract available.

7.

Tetrad analysis in plants and fungi finds large differences in gene conversion rates but no GC bias.

Liu H, Huang J, Sun X, Li J, Hu Y, Yu L, Liti G, Tian D, Hurst LD, Yang S.

Nat Ecol Evol. 2018 Jan;2(1):164-173. doi: 10.1038/s41559-017-0372-7. Epub 2017 Nov 20.

8.

Clonal Heterogeneity Influences the Fate of New Adaptive Mutations.

Vázquez-García I, Salinas F, Li J, Fischer A, Barré B, Hallin J, Bergström A, Alonso-Perez E, Warringer J, Mustonen V, Liti G.

Cell Rep. 2017 Oct 17;21(3):732-744. doi: 10.1016/j.celrep.2017.09.046.

9.

Budding Yeast Strains and Genotype-Phenotype Mapping.

Liti G, Warringer J, Blomberg A.

Cold Spring Harb Protoc. 2017 Aug 1;2017(8):pdb.top077735. doi: 10.1101/pdb.top077735.

PMID:
28765302
10.

Yeast Reciprocal Hemizygosity to Confirm the Causality of a Quantitative Trait Loci-Associated Gene.

Warringer J, Liti G, Blomberg A.

Cold Spring Harb Protoc. 2017 Aug 1;2017(8):pdb.prot089078. doi: 10.1101/pdb.prot089078.

PMID:
28765294
11.

Mapping Quantitative Trait Loci in Yeast.

Liti G, Warringer J, Blomberg A.

Cold Spring Harb Protoc. 2017 Aug 1;2017(8):pdb.prot089060. doi: 10.1101/pdb.prot089060.

PMID:
28765293
12.

Isolation and Laboratory Domestication of Natural Yeast Strains.

Liti G, Warringer J, Blomberg A.

Cold Spring Harb Protoc. 2017 Aug 1;2017(8):pdb.prot089052. doi: 10.1101/pdb.prot089052.

PMID:
28765292
13.

De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms.

Giordano F, Aigrain L, Quail MA, Coupland P, Bonfield JK, Davies RM, Tischler G, Jackson DK, Keane TM, Li J, Yue JX, Liti G, Durbin R, Ning Z.

Sci Rep. 2017 Jun 21;7(1):3935. doi: 10.1038/s41598-017-03996-z.

14.

Identification of Nitrogen Consumption Genetic Variants in Yeast Through QTL Mapping and Bulk Segregant RNA-Seq Analyses.

Cubillos FA, Brice C, Molinet J, Tisné S, Abarca V, Tapia SM, Oporto C, García V, Liti G, Martínez C.

G3 (Bethesda). 2017 Jun 7;7(6):1693-1705. doi: 10.1534/g3.117.042127.

15.

Contrasting evolutionary genome dynamics between domesticated and wild yeasts.

Yue JX, Li J, Aigrain L, Hallin J, Persson K, Oliver K, Bergström A, Coupland P, Warringer J, Lagomarsino MC, Fischer G, Durbin R, Liti G.

Nat Genet. 2017 Jun;49(6):913-924. doi: 10.1038/ng.3847. Epub 2017 Apr 17.

16.

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.

Istace B, Friedrich A, d'Agata L, Faye S, Payen E, Beluche O, Caradec C, Davidas S, Cruaud C, Liti G, Lemainque A, Engelen S, Wincker P, Schacherer J, Aury JM.

Gigascience. 2017 Feb 1;6(2):1-13. doi: 10.1093/gigascience/giw018.

17.

The genetic architecture of low-temperature adaptation in the wine yeast Saccharomyces cerevisiae.

García-Ríos E, Morard M, Parts L, Liti G, Guillamón JM.

BMC Genomics. 2017 Feb 14;18(1):159. doi: 10.1186/s12864-017-3572-2.

18.

Mismatch Repair Incompatibilities in Diverse Yeast Populations.

Bui DT, Friedrich A, Al-Sweel N, Liti G, Schacherer J, Aquadro CF, Alani E.

Genetics. 2017 Apr;205(4):1459-1471. doi: 10.1534/genetics.116.199513. Epub 2017 Feb 13.

19.

Powerful decomposition of complex traits in a diploid model.

Hallin J, Märtens K, Young AI, Zackrisson M, Salinas F, Parts L, Warringer J, Liti G.

Nat Commun. 2016 Nov 2;7:13311. doi: 10.1038/ncomms13311.

20.

ISSY32 Highlights.

Liti G, Buzzini P.

Yeast. 2016 Jul;33(7):241-2. doi: 10.1002/yea.3176. No abstract available.

21.

Ploidy influences the functional attributes of de novo lager yeast hybrids.

Krogerus K, Arvas M, De Chiara M, Magalhães F, Mattinen L, Oja M, Vidgren V, Yue JX, Liti G, Gibson B.

Appl Microbiol Biotechnol. 2016 Aug;100(16):7203-22. doi: 10.1007/s00253-016-7588-3. Epub 2016 May 17.

22.

Predicting quantitative traits from genome and phenome with near perfect accuracy.

Märtens K, Hallin J, Warringer J, Liti G, Parts L.

Nat Commun. 2016 May 10;7:11512. doi: 10.1038/ncomms11512.

23.

Extensive Recombination of a Yeast Diploid Hybrid through Meiotic Reversion.

Laureau R, Loeillet S, Salinas F, Bergström A, Legoix-Né P, Liti G, Nicolas A.

PLoS Genet. 2016 Feb 1;12(2):e1005781. doi: 10.1371/journal.pgen.1005781. eCollection 2016 Feb. Erratum in: PLoS Genet. 2016 Mar;12(3):e1005953.

24.

Yeast 2.0: a new chapter.

Liti G.

Yeast. 2016 Jan;33(1):3-4. doi: 10.1002/yea.3143. No abstract available.

25.

Elucidating the molecular architecture of adaptation via evolve and resequence experiments.

Long A, Liti G, Luptak A, Tenaillon O.

Nat Rev Genet. 2015 Oct;16(10):567-82. doi: 10.1038/nrg3937. Epub 2015 Sep 8. Review.

26.

The fascinating and secret wild life of the budding yeast S. cerevisiae.

Liti G.

Elife. 2015 Mar 25;4. doi: 10.7554/eLife.05835. Review.

27.

ATG18 and FAB1 are involved in dehydration stress tolerance in Saccharomyces cerevisiae.

López-Martínez G, Margalef-Català M, Salinas F, Liti G, Cordero-Otero R.

PLoS One. 2015 Mar 24;10(3):e0119606. doi: 10.1371/journal.pone.0119606. eCollection 2015.

28.

High-quality genome (re)assembly using chromosomal contact data.

Marie-Nelly H, Marbouty M, Cournac A, Flot JF, Liti G, Parodi DP, Syan S, Guillén N, Margeot A, Zimmer C, Koszul R.

Nat Commun. 2014 Dec 17;5:5695. doi: 10.1038/ncomms6695.

29.

Concerted evolution of life stage performances signals recent selection on yeast nitrogen use.

Ibstedt S, Stenberg S, Bagés S, Gjuvsland AB, Salinas F, Kourtchenko O, Samy JK, Blomberg A, Omholt SW, Liti G, Beltran G, Warringer J.

Mol Biol Evol. 2015 Jan;32(1):153-61. doi: 10.1093/molbev/msu285. Epub 2014 Oct 27.

PMID:
25349282
30.

Standing genetic variation drives repeatable experimental evolution in outcrossing populations of Saccharomyces cerevisiae.

Burke MK, Liti G, Long AD.

Mol Biol Evol. 2014 Dec;31(12):3228-39. doi: 10.1093/molbev/msu256. Epub 2014 Aug 28.

31.

Saccharomyces pastorianus: genomic insights inspiring innovation for industry.

Gibson B, Liti G.

Yeast. 2015 Jan;32(1):17-27. doi: 10.1002/yea.3033. Epub 2014 Sep 23. Review.

32.

Deletion of the Saccharomyces cerevisiae ARO8 gene, encoding an aromatic amino acid transaminase, enhances phenylethanol production from glucose.

Romagnoli G, Knijnenburg TA, Liti G, Louis EJ, Pronk JT, Daran JM.

Yeast. 2015 Jan;32(1):29-45. doi: 10.1002/yea.3015. Epub 2014 May 13.

33.

Filling annotation gaps in yeast genomes using genome-wide contact maps.

Marie-Nelly H, Marbouty M, Cournac A, Liti G, Fischer G, Zimmer C, Koszul R.

Bioinformatics. 2014 Aug 1;30(15):2105-13. doi: 10.1093/bioinformatics/btu162. Epub 2014 Apr 7.

34.

Phenotypic characterisation of Saccharomyces spp. yeast for tolerance to stresses encountered during fermentation of lignocellulosic residues to produce bioethanol.

Wimalasena TT, Greetham D, Marvin ME, Liti G, Chandelia Y, Hart A, Louis EJ, Phister TG, Tucker GA, Smart KA.

Microb Cell Fact. 2014 Mar 27;13(1):47. doi: 10.1186/1475-2859-13-47.

35.

Mapping genetic variants underlying differences in the central nitrogen metabolism in fermenter yeasts.

Jara M, Cubillos FA, García V, Salinas F, Aguilera O, Liti G, Martínez C.

PLoS One. 2014 Jan 21;9(1):e86533. doi: 10.1371/journal.pone.0086533. eCollection 2014.

36.

Kinetochore assembly and heterochromatin formation occur autonomously in Schizosaccharomyces pombe.

Brown WR, Thomas G, Lee NC, Blythe M, Liti G, Warringer J, Loose MW.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):1903-8. doi: 10.1073/pnas.1216934111. Epub 2014 Jan 21.

37.

A high-definition view of functional genetic variation from natural yeast genomes.

Bergström A, Simpson JT, Salinas F, Barré B, Parts L, Zia A, Nguyen Ba AN, Moses AM, Louis EJ, Mustonen V, Warringer J, Durbin R, Liti G.

Mol Biol Evol. 2014 Apr;31(4):872-88. doi: 10.1093/molbev/msu037. Epub 2014 Jan 14.

38.

A set of genetically diverged Saccharomyces cerevisiae strains with markerless deletions of multiple auxotrophic genes.

Louvel H, Gillet-Markowska A, Liti G, Fischer G.

Yeast. 2014 Mar;31(3):91-101. doi: 10.1002/yea.2991. Epub 2013 Dec 13.

39.

High-resolution mapping of complex traits with a four-parent advanced intercross yeast population.

Cubillos FA, Parts L, Salinas F, Bergström A, Scovacricchi E, Zia A, Illingworth CJ, Mustonen V, Ibstedt S, Warringer J, Louis EJ, Durbin R, Liti G.

Genetics. 2013 Nov;195(3):1141-55. doi: 10.1534/genetics.113.155515. Epub 2013 Sep 13.

40.

ICY 2012 highlights.

Abbas C, Kurtzman C, Liti G.

Yeast. 2013 Aug;30(8):293-4. doi: 10.1002/yea.2966. No abstract available.

41.

Inferring genome-wide recombination landscapes from advanced intercross lines: application to yeast crosses.

Illingworth CJ, Parts L, Bergström A, Liti G, Mustonen V.

PLoS One. 2013 May 2;8(5):e62266. doi: 10.1371/journal.pone.0062266. Print 2013.

42.

Ancient evolutionary trade-offs between yeast ploidy states.

Zörgö E, Chwialkowska K, Gjuvsland AB, Garré E, Sunnerhagen P, Liti G, Blomberg A, Omholt SW, Warringer J.

PLoS Genet. 2013 Mar;9(3):e1003388. doi: 10.1371/journal.pgen.1003388. Epub 2013 Mar 21.

43.

Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression.

Dunn B, Paulish T, Stanbery A, Piotrowski J, Koniges G, Kroll E, Louis EJ, Liti G, Sherlock G, Rosenzweig F.

PLoS Genet. 2013 Mar;9(3):e1003366. doi: 10.1371/journal.pgen.1003366. Epub 2013 Mar 21.

44.

High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome.

Liti G, Nguyen Ba AN, Blythe M, Müller CA, Bergström A, Cubillos FA, Dafhnis-Calas F, Khoshraftar S, Malla S, Mehta N, Siow CC, Warringer J, Moses AM, Louis EJ, Nieduszynski CA.

BMC Genomics. 2013 Jan 31;14:69. doi: 10.1186/1471-2164-14-69.

45.

The genetic basis of natural variation in oenological traits in Saccharomyces cerevisiae.

Salinas F, Cubillos FA, Soto D, Garcia V, Bergström A, Warringer J, Ganga MA, Louis EJ, Liti G, Martinez C.

PLoS One. 2012;7(11):e49640. doi: 10.1371/journal.pone.0049640. Epub 2012 Nov 21.

46.

'New' yeasts for a new Yeast.

Armstrong J, Davis D, Liti G, Oliver S.

Yeast. 2012 Oct;29(10):407. doi: 10.1002/yea.2923. No abstract available.

47.

Advances in quantitative trait analysis in yeast.

Liti G, Louis EJ.

PLoS Genet. 2012;8(8):e1002912. doi: 10.1371/journal.pgen.1002912. Epub 2012 Aug 16. Review.

48.

Surprisingly diverged populations of Saccharomyces cerevisiae in natural environments remote from human activity.

Wang QM, Liu WQ, Liti G, Wang SA, Bai FY.

Mol Ecol. 2012 Nov;21(22):5404-17. doi: 10.1111/j.1365-294X.2012.05732.x. Epub 2012 Aug 22.

PMID:
22913817
49.

Apparent ploidy effects on silencing are post-transcriptional at HML and telomeres in Saccharomyces cerevisiae.

McLaughlan JM, Liti G, Sharp S, Maslowska A, Louis EJ.

PLoS One. 2012;7(7):e39044. doi: 10.1371/journal.pone.0039044. Epub 2012 Jul 9.

50.

A Geographically Diverse Collection of Schizosaccharomyces pombe Isolates Shows Limited Phenotypic Variation but Extensive Karyotypic Diversity.

Brown WR, Liti G, Rosa C, James S, Roberts I, Robert V, Jolly N, Tang W, Baumann P, Green C, Schlegel K, Young J, Hirchaud F, Leek S, Thomas G, Blomberg A, Warringer J.

G3 (Bethesda). 2011 Dec;1(7):615-26. doi: 10.1534/g3.111.001123. Epub 2011 Dec 1.

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