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Items: 18

1.

FAIRsharing as a community approach to standards, repositories and policies.

Sansone SA, McQuilton P, Rocca-Serra P, Gonzalez-Beltran A, Izzo M, Lister AL, Thurston M; FAIRsharing Community.

Nat Biotechnol. 2019 Apr;37(4):358-367. doi: 10.1038/s41587-019-0080-8. No abstract available.

2.

The Ontology for Biomedical Investigations.

Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, Haendel MA, He Y, Heiskanen M, Hernandez-Boussard T, Jensen M, Lin Y, Lister AL, Lord P, Malone J, Manduchi E, McGee M, Morrison N, Overton JA, Parkinson H, Peters B, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Schober D, Smith B, Soldatova LN, Stoeckert CJ Jr, Taylor CF, Torniai C, Turner JA, Vita R, Whetzel PL, Zheng J.

PLoS One. 2016 Apr 29;11(4):e0154556. doi: 10.1371/journal.pone.0154556. eCollection 2016.

3.

Inhibition of spawning in zebrafish (Danio rerio): Adverse outcome pathways of quinacrine and ethinylestradiol.

Cosme MM, Lister AL, Van Der Kraak G.

Gen Comp Endocrinol. 2015 Aug 1;219:89-101. doi: 10.1016/j.ygcen.2015.01.013. Epub 2015 Jan 30.

PMID:
25644209
4.

The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation.

Malone J, Brown A, Lister AL, Ison J, Hull D, Parkinson H, Stevens R.

J Biomed Semantics. 2014 Jun 2;5:25. doi: 10.1186/2041-1480-5-25. eCollection 2014.

5.

Fundulus heteroclitus: ovarian reproductive physiology and the impact of environmental contaminants.

Lister AL, Van Der Kraak GJ, Rutherford R, MacLatchy D.

Comp Biochem Physiol C Toxicol Pharmacol. 2011 Nov;154(4):278-87. doi: 10.1016/j.cbpc.2011.07.004. Epub 2011 Jul 12. Review.

PMID:
21771666
6.

Quantitative fitness analysis shows that NMD proteins and many other protein complexes suppress or enhance distinct telomere cap defects.

Addinall SG, Holstein EM, Lawless C, Yu M, Chapman K, Banks AP, Ngo HP, Maringele L, Taschuk M, Young A, Ciesiolka A, Lister AL, Wipat A, Wilkinson DJ, Lydall D.

PLoS Genet. 2011 Apr;7(4):e1001362. doi: 10.1371/journal.pgen.1001362. Epub 2011 Apr 7.

7.

The inhibitory control of oocyte maturation in the zebrafish (Danio rerio): the role of the G protein-coupled estrogen receptor and epidermal growth factor.

Van Der Kraak G, Lister AL.

Biol Reprod. 2011 Jul;85(1):6-8. doi: 10.1095/biolreprod.111.092411. Epub 2011 Mar 30. No abstract available.

PMID:
21451148
8.

Annotation of SBML models through rule-based semantic integration.

Lister AL, Lord P, Pocock M, Wipat A.

J Biomed Semantics. 2010 Jun 22;1 Suppl 1:S3. doi: 10.1186/2041-1480-1-S1-S3.

9.

Live coverage of scientific conferences using web technologies.

Lister AL, Datta RS, Hofmann O, Krause R, Kuhn M, Roth B, Schneider R.

PLoS Comput Biol. 2010 Jan 29;6(1):e1000563. doi: 10.1371/journal.pcbi.1000563. No abstract available.

10.

Live Coverage of Intelligent Systems for Molecular Biology/European Conference on computational biology (ISMB/ECCB) 2009.

Lister AL, Datta RS, Hofmann O, Krause R, Kuhn M, Roth B, Schneider R.

PLoS Comput Biol. 2010 Jan 29;6(1):e1000640. doi: 10.1371/journal.pcbi.1000640. No abstract available.

11.

Managing experimental data using FuGE.

Jones AR, Lister AL.

Methods Mol Biol. 2010;604:333-43. doi: 10.1007/978-1-60761-444-9_23.

PMID:
20013382
12.

Saint: a lightweight integration environment for model annotation.

Lister AL, Pocock M, Taschuk M, Wipat A.

Bioinformatics. 2009 Nov 15;25(22):3026-7. doi: 10.1093/bioinformatics/btp523. Epub 2009 Sep 4.

13.

Regulation of prostaglandin synthesis in ovaries of sexually-mature zebrafish (Danio rerio).

Lister AL, Van Der Kraak GJ.

Mol Reprod Dev. 2009 Nov;76(11):1064-75. doi: 10.1002/mrd.21072.

PMID:
19551897
14.

Modeling and managing experimental data using FuGE.

Jones AR, Lister AL, Hermida L, Wilkinson P, Eisenacher M, Belhajjame K, Gibson F, Lord P, Pocock M, Rosenfelder H, Santoyo-Lopez J, Wipat A, Paton NW.

OMICS. 2009 Jun;13(3):239-51. doi: 10.1089/omi.2008.0080.

PMID:
19441879
15.

An investigation into the role of prostaglandins in zebrafish oocyte maturation and ovulation.

Lister AL, Van Der Kraak G.

Gen Comp Endocrinol. 2008 Oct;159(1):46-57. doi: 10.1016/j.ygcen.2008.07.017. Epub 2008 Aug 3.

PMID:
18722378
16.

Meeting report: the fourth Genomic Standards Consortium (GSC) workshop.

Field D, Glöckner FO, Garrity GM, Gray T, Sterk P, Cochrane G, Vaughan R, Kolker E, Kottmann R, Kyrpides N, Angiuoli S, Dawyndt P, Guralnick R, Goldstein P, Hall N, Hirschman L, Kravitz S, Lister AL, Markowitz V, Thomson N, Whetzel T.

OMICS. 2008 Jun;12(2):101-8. doi: 10.1089/omi.2008.0014.

PMID:
18564914
17.

The minimum information about a genome sequence (MIGS) specification.

Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A.

Nat Biotechnol. 2008 May;26(5):541-7. doi: 10.1038/nbt1360.

18.

Testosterone and estradiol concentrations in serum, velvet skin, and growing antler bone of male white-tailed deer.

Bubenik GA, Miller KV, Lister AL, Osborn DA, Bartos L, van der Kraak GJ.

J Exp Zool A Comp Exp Biol. 2005 Mar 1;303(3):186-92.

PMID:
15726635

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