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Items: 1 to 50 of 83

1.

The maternal-to-zygotic transition revisited.

Vastenhouw NL, Cao WX, Lipshitz HD.

Development. 2019 Jun 12;146(11). pii: dev161471. doi: 10.1242/dev.161471. Review.

2.

The influence of microRNAs and poly(A) tail length on endogenous mRNA-protein complexes.

Rissland OS, Subtelny AO, Wang M, Lugowski A, Nicholson B, Laver JD, Sidhu SS, Smibert CA, Lipshitz HD, Bartel DP.

Genome Biol. 2017 Oct 31;18(1):211. doi: 10.1186/s13059-017-1330-z.

3.

ME31B globally represses maternal mRNAs by two distinct mechanisms during the Drosophila maternal-to-zygotic transition.

Wang M, Ly M, Lugowski A, Laver JD, Lipshitz HD, Smibert CA, Rissland OS.

Elife. 2017 Sep 6;6. pii: e27891. doi: 10.7554/eLife.27891.

4.

Post-transcriptional regulation of gene expression.

Lipshitz HD, Claycomb JM, Smibert CA.

Methods. 2017 Aug 15;126:1-2. doi: 10.1016/j.ymeth.2017.08.007. No abstract available.

PMID:
28867174
5.

The Smaug RNA-Binding Protein Is Essential for microRNA Synthesis During the Drosophila Maternal-to-Zygotic Transition.

Luo H, Li X, Claycomb JM, Lipshitz HD.

G3 (Bethesda). 2016 Nov 8;6(11):3541-3551. doi: 10.1534/g3.116.034199.

6.

Cutoff Suppresses RNA Polymerase II Termination to Ensure Expression of piRNA Precursors.

Chen YA, Stuwe E, Luo Y, Ninova M, Le Thomas A, Rozhavskaya E, Li S, Vempati S, Laver JD, Patel DJ, Smibert CA, Lipshitz HD, Toth KF, Aravin AA.

Mol Cell. 2016 Jul 7;63(1):97-109. doi: 10.1016/j.molcel.2016.05.010. Epub 2016 Jun 9.

7.

A high-throughput pipeline for the production of synthetic antibodies for analysis of ribonucleoprotein complexes.

Na H, Laver JD, Jeon J, Singh F, Ancevicius K, Fan Y, Cao WX, Nie K, Yang Z, Luo H, Wang M, Rissland O, Westwood JT, Kim PM, Smibert CA, Lipshitz HD, Sidhu SS.

RNA. 2016 Apr;22(4):636-55. doi: 10.1261/rna.055186.115. Epub 2016 Feb 4.

8.

A Smaug2-Based Translational Repression Complex Determines the Balance between Precursor Maintenance versus Differentiation during Mammalian Neurogenesis.

Amadei G, Zander MA, Yang G, Dumelie JG, Vessey JP, Lipshitz HD, Smibert CA, Kaplan DR, Miller FD.

J Neurosci. 2015 Nov 25;35(47):15666-81. doi: 10.1523/JNEUROSCI.2172-15.2015.

9.

The Maternal-to-Zygotic Transition. Preface.

Lipshitz HD.

Curr Top Dev Biol. 2015;113:xi-xiii. doi: 10.1016/S0070-2153(15)00076-9. No abstract available.

PMID:
26358880
10.

Regulation and Function of Maternal Gene Products During the Maternal-to-Zygotic Transition in Drosophila.

Laver JD, Marsolais AJ, Smibert CA, Lipshitz HD.

Curr Top Dev Biol. 2015;113:43-84. doi: 10.1016/bs.ctdb.2015.06.007. Epub 2015 Aug 14. Review.

PMID:
26358870
11.

Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition.

Laver JD, Li X, Ray D, Cook KB, Hahn NA, Nabeel-Shah S, Kekis M, Luo H, Marsolais AJ, Fung KY, Hughes TR, Westwood JT, Sidhu SS, Morris Q, Lipshitz HD, Smibert CA.

Genome Biol. 2015 May 12;16:94. doi: 10.1186/s13059-015-0659-4.

12.

Transcription gets to the checkpoint.

Laver JD, Lipshitz HD.

Cell. 2015 Mar 12;160(6):1043-4. doi: 10.1016/j.cell.2015.02.051.

13.

Drosophila Hindsight and mammalian RREB-1 are evolutionarily conserved DNA-binding transcriptional attenuators.

Ming L, Wilk R, Reed BH, Lipshitz HD.

Differentiation. 2013 Nov-Dec;86(4-5):159-70. doi: 10.1016/j.diff.2013.12.001. Epub 2014 Jan 11.

PMID:
24418439
14.

Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein.

Chen L, Dumelie JG, Li X, Cheng MH, Yang Z, Laver JD, Siddiqui NU, Westwood JT, Morris Q, Lipshitz HD, Smibert CA.

Genome Biol. 2014 Jan 7;15(1):R4. doi: 10.1186/gb-2014-15-1-r4.

15.

Staufen2 regulates neuronal target RNAs.

Heraud-Farlow JE, Sharangdhar T, Li X, Pfeifer P, Tauber S, Orozco D, Hörmann A, Thomas S, Bakosova A, Farlow AR, Edbauer D, Lipshitz HD, Morris QD, Bilban M, Doyle M, Kiebler MA.

Cell Rep. 2013 Dec 26;5(6):1511-8. doi: 10.1016/j.celrep.2013.11.039. Epub 2013 Dec 19.

16.

Finding the target sites of RNA-binding proteins.

Li X, Kazan H, Lipshitz HD, Morris QD.

Wiley Interdiscip Rev RNA. 2014 Jan-Feb;5(1):111-30. doi: 10.1002/wrna.1201. Epub 2013 Nov 11. Review.

17.

Genome-wide analysis of Staufen-associated mRNAs identifies secondary structures that confer target specificity.

Laver JD, Li X, Ancevicius K, Westwood JT, Smibert CA, Morris QD, Lipshitz HD.

Nucleic Acids Res. 2013 Nov;41(20):9438-60. doi: 10.1093/nar/gkt702. Epub 2013 Aug 13.

18.

A compendium of RNA-binding motifs for decoding gene regulation.

Ray D, Kazan H, Cook KB, Weirauch MT, Najafabadi HS, Li X, Gueroussov S, Albu M, Zheng H, Yang A, Na H, Irimia M, Matzat LH, Dale RK, Smith SA, Yarosh CA, Kelly SM, Nabet B, Mecenas D, Li W, Laishram RS, Qiao M, Lipshitz HD, Piano F, Corbett AH, Carstens RP, Frey BJ, Anderson RA, Lynch KW, Penalva LO, Lei EP, Fraser AG, Blencowe BJ, Morris QD, Hughes TR.

Nature. 2013 Jul 11;499(7457):172-7. doi: 10.1038/nature12311.

19.

HuR is required for IL-17-induced Act1-mediated CXCL1 and CXCL5 mRNA stabilization.

Herjan T, Yao P, Qian W, Li X, Liu C, Bulek K, Sun D, Yang WP, Zhu J, He A, Carman JA, Erzurum SC, Lipshitz HD, Fox PL, Hamilton TA, Li X.

J Immunol. 2013 Jul 15;191(2):640-9. doi: 10.4049/jimmunol.1203315. Epub 2013 Jun 14.

20.

Synthetic antibodies as tools to probe RNA-binding protein function.

Laver JD, Ancevicius K, Sollazzo P, Westwood JT, Sidhu SS, Lipshitz HD, Smibert CA.

Mol Biosyst. 2012 Jun;8(6):1650-7. doi: 10.1039/c2mb00007e. Epub 2012 Apr 5.

PMID:
22481296
21.

Genome-wide analysis of the maternal-to-zygotic transition in Drosophila primordial germ cells.

Siddiqui NU, Li X, Luo H, Karaiskakis A, Hou H, Kislinger T, Westwood JT, Morris Q, Lipshitz HD.

Genome Biol. 2012 Feb 20;13(2):R11. doi: 10.1186/gb-2012-13-2-r11.

22.

Transcript clearance during the maternal-to-zygotic transition.

Walser CB, Lipshitz HD.

Curr Opin Genet Dev. 2011 Aug;21(4):431-43. doi: 10.1016/j.gde.2011.03.003. Epub 2011 Apr 14. Review.

PMID:
21497081
23.

Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure.

Li X, Quon G, Lipshitz HD, Morris Q.

RNA. 2010 Jun;16(6):1096-107. doi: 10.1261/rna.2017210. Epub 2010 Apr 23.

24.

A vertebrate Polycomb response element governs segmentation of the posterior hindbrain.

Sing A, Pannell D, Karaiskakis A, Sturgeon K, Djabali M, Ellis J, Lipshitz HD, Cordes SP.

Cell. 2009 Sep 4;138(5):885-97. doi: 10.1016/j.cell.2009.08.020.

25.

The maternal-to-zygotic transition: a play in two acts.

Tadros W, Lipshitz HD.

Development. 2009 Sep;136(18):3033-42. doi: 10.1242/dev.033183. Review.

26.

Follow the mRNA: a new model for Bicoid gradient formation.

Lipshitz HD.

Nat Rev Mol Cell Biol. 2009 Aug;10(8):509-12. doi: 10.1038/nrm2730.

PMID:
19626044
27.

Q&A: epistasis.

Roth FP, Lipshitz HD, Andrews BJ.

J Biol. 2009;8(4):35. doi: 10.1186/jbiol144. Epub 2009 May 22. No abstract available.

28.

Eye evolution at high resolution: the neuron as a unit of homology.

Erclik T, Hartenstein V, McInnes RR, Lipshitz HD.

Dev Biol. 2009 Aug 1;332(1):70-9. doi: 10.1016/j.ydbio.2009.05.565. Epub 2009 May 23. Review.

29.

Hindsight modulates Delta expression during Drosophila cone cell induction.

Pickup AT, Ming L, Lipshitz HD.

Development. 2009 Mar;136(6):975-82. doi: 10.1242/dev.027318.

30.

An essential role for the RNA-binding protein Smaug during the Drosophila maternal-to-zygotic transition.

Benoit B, He CH, Zhang F, Votruba SM, Tadros W, Westwood JT, Smibert CA, Lipshitz HD, Theurkauf WE.

Development. 2009 Mar;136(6):923-32. doi: 10.1242/dev.031815.

31.

Measuring mRNA stability during early Drosophila embryogenesis.

Semotok JL, Westwood JT, Goldman AL, Cooperstock RL, Lipshitz HD.

Methods Enzymol. 2008;448:299-334. doi: 10.1016/S0076-6879(08)02616-5.

PMID:
19111183
32.

Drosophila maternal Hsp83 mRNA destabilization is directed by multiple SMAUG recognition elements in the open reading frame.

Semotok JL, Luo H, Cooperstock RL, Karaiskakis A, Vari HK, Smibert CA, Lipshitz HD.

Mol Cell Biol. 2008 Nov;28(22):6757-72. doi: 10.1128/MCB.00037-08. Epub 2008 Sep 15. Erratum in: Mol Cell Biol. 2008 Dec;28(24):7533.

33.

Conserved role of the Vsx genes supports a monophyletic origin for bilaterian visual systems.

Erclik T, Hartenstein V, Lipshitz HD, McInnes RR.

Curr Biol. 2008 Sep 9;18(17):1278-87. doi: 10.1016/j.cub.2008.07.076. Epub 2008 Aug 28.

34.

A multiprotein complex that mediates translational enhancement in Drosophila.

Nelson MR, Luo H, Vari HK, Cox BJ, Simmonds AJ, Krause HM, Lipshitz HD, Smibert CA.

J Biol Chem. 2007 Nov 23;282(47):34031-8. Epub 2007 Sep 21.

35.

The mother-to-child transition.

Tadros W, Westwood JT, Lipshitz HD.

Dev Cell. 2007 Jun;12(6):847-9. Review.

36.

Regulation and function of maternal mRNA destabilization during early Drosophila development.

Semotok JL, Lipshitz HD.

Differentiation. 2007 Jul;75(6):482-506. Epub 2007 Mar 23. Review.

PMID:
17509066
37.

SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase.

Tadros W, Goldman AL, Babak T, Menzies F, Vardy L, Orr-Weaver T, Hughes TR, Westwood JT, Smibert CA, Lipshitz HD.

Dev Cell. 2007 Jan;12(1):143-55.

38.

Smaug recruits the CCR4/POP2/NOT deadenylase complex to trigger maternal transcript localization in the early Drosophila embryo.

Semotok JL, Cooperstock RL, Pinder BD, Vari HK, Lipshitz HD, Smibert CA.

Curr Biol. 2005 Feb 22;15(4):284-94.

39.
40.

From fruit flies to fallout: Ed Lewis and his science.

Lipshitz HD.

Dev Dyn. 2005 Mar;232(3):529-46. Review. No abstract available.

41.

From fruit flies to fallout: Ed Lewis and his science.

Lipshitz HD.

J Genet. 2004 Aug;83(2):201-18. No abstract available.

43.

The 2003 Thomas Hunt Morgan Medal; David S. Hogness.

Burtis KC, Hawley RS, Lipshitz HD.

Genetics. 2003 Aug;164(4):1243-45. No abstract available.

44.
45.

Regulation of maternal transcript destabilization during egg activation in Drosophila.

Tadros W, Houston SA, Bashirullah A, Cooperstock RL, Semotok JL, Reed BH, Lipshitz HD.

Genetics. 2003 Jul;164(3):989-1001.

46.

Control of photoreceptor cell morphology, planar polarity and epithelial integrity during Drosophila eye development.

Pickup AT, Lamka ML, Sun Q, Yip ML, Lipshitz HD.

Development. 2002 May;129(9):2247-58.

47.
48.

Spatial and temporal control of RNA stability.

Bashirullah A, Cooperstock RL, Lipshitz HD.

Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7025-8. Review.

49.

RNA localization and translational regulation during axis specification in the Drosophila oocyte.

Cooperstock RL, Lipshitz HD.

Int Rev Cytol. 2001;203:541-66. Review.

PMID:
11131526
50.

Retrovirus vector silencing is de novo methylase independent and marked by a repressive histone code.

Pannell D, Osborne CS, Yao S, Sukonnik T, Pasceri P, Karaiskakis A, Okano M, Li E, Lipshitz HD, Ellis J.

EMBO J. 2000 Nov 1;19(21):5884-94.

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