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Items: 1 to 50 of 341

1.

Precision surveillance for viral respiratory pathogens: virome capture sequencing for the detection and genomic characterization of severe acute respiratory infection in Uganda.

Cummings MJ, Tokarz R, Bakamutumaho B, Kayiwa J, Byaruhanga T, Owor N, Namagambo B, Wolf A, Mathema B, Lutwama JJ, Schluger NW, Lipkin WI, O'Donnell MR.

Clin Infect Dis. 2018 Aug 7. doi: 10.1093/cid/ciy656. [Epub ahead of print]

PMID:
30099510
2.

Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics.

Nagy-Szakal D, Barupal DK, Lee B, Che X, Williams BL, Kahn EJR, Ukaigwe JE, Bateman L, Klimas NG, Komaroff AL, Levine S, Montoya JG, Peterson DL, Levin B, Hornig M, Fiehn O, Lipkin WI.

Sci Rep. 2018 Jul 3;8(1):10056. doi: 10.1038/s41598-018-28477-9.

3.

Gut microbiomes of wild great apes fluctuate seasonally in response to diet.

Hicks AL, Lee KJ, Couto-Rodriguez M, Patel J, Sinha R, Guo C, Olson SH, Seimon A, Seimon TA, Ondzie AU, Karesh WB, Reed P, Cameron KN, Lipkin WI, Williams BL.

Nat Commun. 2018 May 3;9(1):1786. doi: 10.1038/s41467-018-04204-w.

4.

Viral Diversity of House Mice in New York City.

Williams SH, Che X, Garcia JA, Klena JD, Lee B, Muller D, Ulrich W, Corrigan RM, Nichol S, Jain K, Lipkin WI.

MBio. 2018 Apr 17;9(2). pii: e01354-17. doi: 10.1128/mBio.01354-17.

5.

New York City House Mice (Mus musculus) as Potential Reservoirs for Pathogenic Bacteria and Antimicrobial Resistance Determinants.

Williams SH, Che X, Paulick A, Guo C, Lee B, Muller D, Uhlemann AC, Lowy FD, Corrigan RM, Lipkin WI.

MBio. 2018 Apr 17;9(2). pii: e00624-18. doi: 10.1128/mBio.00624-18.

6.

Identification of Novel Viruses in Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis Ticks.

Tokarz R, Sameroff S, Tagliafierro T, Jain K, Williams SH, Cucura DM, Rochlin I, Monzon J, Carpi G, Tufts D, Diuk-Wasser M, Brinkerhoff J, Lipkin WI.

mSphere. 2018 Mar 7;3(2). pii: e00614-17. doi: 10.1128/mSphere.00614-17. eCollection 2018 Mar-Apr.

7.

Diagnosis of Zika Virus Infection by Peptide Array and Enzyme-Linked Immunosorbent Assay.

Mishra N, Caciula A, Price A, Thakkar R, Ng J, Chauhan LV, Jain K, Che X, Espinosa DA, Montoya Cruz M, Balmaseda A, Sullivan EH, Patel JJ, Jarman RG, Rakeman JL, Egan CT, Reusken CBEM, Koopmans MPG, Harris E, Tokarz R, Briese T, Lipkin WI.

MBio. 2018 Mar 6;9(2). pii: e00095-18. doi: 10.1128/mBio.00095-18.

8.

A multiplex serologic platform for diagnosis of tick-borne diseases.

Tokarz R, Mishra N, Tagliafierro T, Sameroff S, Caciula A, Chauhan L, Patel J, Sullivan E, Gucwa A, Fallon B, Golightly M, Molins C, Schriefer M, Marques A, Briese T, Lipkin WI.

Sci Rep. 2018 Feb 16;8(1):3158. doi: 10.1038/s41598-018-21349-2.

9.

Highly Sensitive Virome Capture Sequencing Technique VirCapSeq-VERT Identifies Partial Noncoding Sequences but no Active Viral Infection in Cutaneous T-Cell Lymphoma.

Anderson ME, Nagy-Szakal D, Jain K, Patrone CC, Frattini MG, Lipkin WI, Geskin LJ.

J Invest Dermatol. 2018 Jul;138(7):1671-1673. doi: 10.1016/j.jid.2018.01.024. Epub 2018 Feb 7. No abstract available.

PMID:
29427587
10.

New Parvovirus Associated with Serum Hepatitis in Horses after Inoculation of Common Biological Product.

Divers TJ, Tennant BC, Kumar A, McDonough S, Cullen J, Bhuva N, Jain K, Chauhan LS, Scheel TKH, Lipkin WI, Laverack M, Trivedi S, Srinivasa S, Beard L, Rice CM, Burbelo PD, Renshaw RW, Dubovi E, Kapoor A.

Emerg Infect Dis. 2018 Feb;24(2):303-310. doi: 10.3201/eid2402.171031.

11.

Rodent-Borne Bartonella Infection Varies According to Host Species Within and Among Cities.

Peterson AC, Ghersi BM, Alda F, Firth C, Frye MJ, Bai Y, Osikowicz LM, Riegel C, Lipkin WI, Kosoy MY, Blum MJ.

Ecohealth. 2017 Dec;14(4):771-782. doi: 10.1007/s10393-017-1291-4. Epub 2017 Nov 21.

PMID:
29164472
12.

Prenatal Exposure to Acetaminophen and Risk of ADHD.

Ystrom E, Gustavson K, Brandlistuen RE, Knudsen GP, Magnus P, Susser E, Davey Smith G, Stoltenberg C, Surén P, Håberg SE, Hornig M, Lipkin WI, Nordeng H, Reichborn-Kjennerud T.

Pediatrics. 2017 Nov;140(5). pii: e20163840. doi: 10.1542/peds.2016-3840.

PMID:
29084830
13.

Parvovirus B19 Infection in Children With Arterial Ischemic Stroke.

Fullerton HJ, Luna JM, Wintermark M, Hills NK, Tokarz R, Li Y, Glaser C, DeVeber GA, Lipkin WI, Elkind MSV; VIPS Investigators*.

Stroke. 2017 Oct;48(10):2875-2877. doi: 10.1161/STROKEAHA.117.018272. Epub 2017 Sep 1.

PMID:
28864597
14.

Viral persistence, liver disease, and host response in a hepatitis C-like virus rat model.

Trivedi S, Murthy S, Sharma H, Hartlage AS, Kumar A, Gadi SV, Simmonds P, Chauhan LV, Scheel TKH, Billerbeck E, Burbelo PD, Rice CM, Lipkin WI, Vandegrift K, Cullen JM, Kapoor A.

Hepatology. 2018 Aug;68(2):435-448. doi: 10.1002/hep.29494. Epub 2018 May 21.

PMID:
28859226
15.

Characterization of Fitzroy River Virus and Serologic Evidence of Human and Animal Infection.

Johansen CA, Williams SH, Melville LF, Nicholson J, Hall RA, Bielefeldt-Ohmann H, Prow NA, Chidlow GR, Wong S, Sinha R, Williams DT, Lipkin WI, Smith DW.

Emerg Infect Dis. 2017 Aug;23(8):1289-1299. doi: 10.3201/eid2308.161440.

16.

Mouse models of acute and chronic hepacivirus infection.

Billerbeck E, Wolfisberg R, Fahnøe U, Xiao JW, Quirk C, Luna JM, Cullen JM, Hartlage AS, Chiriboga L, Ghoshal K, Lipkin WI, Bukh J, Scheel TKH, Kapoor A, Rice CM.

Science. 2017 Jul 14;357(6347):204-208. doi: 10.1126/science.aal1962.

17.

Epidemiological and Serological Investigation into the Role of Gestational Maternal Influenza Virus Infection and Autism Spectrum Disorders.

Mahic M, Che X, Susser E, Levin B, Reichborn-Kjennerud T, Magnus P, Stoltenberg C, Chauhan L, Briese T, Bresnahan M, Surén P, Hornig M, Mjaaland S, Lipkin WI.

mSphere. 2017 Jun 21;2(3). pii: e00159-17. doi: 10.1128/mSphere.00159-17. eCollection 2017 May-Jun.

18.

The influence of parental concern on the utility of autism diagnostic instruments.

Havdahl KA, Bishop SL, Surén P, Øyen AS, Lord C, Pickles A, von Tetzchner S, Schjølberg S, Gunnes N, Hornig M, Lipkin WI, Susser E, Bresnahan M, Magnus P, Stenberg N, Reichborn-Kjennerud T, Stoltenberg C.

Autism Res. 2017 Oct;10(10):1672-1686. doi: 10.1002/aur.1817. Epub 2017 Jun 22.

PMID:
28639396
19.

Global patterns in coronavirus diversity.

Anthony SJ, Johnson CK, Greig DJ, Kramer S, Che X, Wells H, Hicks AL, Joly DO, Wolfe ND, Daszak P, Karesh W, Lipkin WI, Morse SS; PREDICT Consortium, Mazet JAK, Goldstein T.

Virus Evol. 2017 Jun 12;3(1):vex012. doi: 10.1093/ve/vex012. eCollection 2017 Jan.

20.

Prenatal fever and autism risk.

Hornig M, Bresnahan MA, Che X, Schultz AF, Ukaigwe JE, Eddy ML, Hirtz D, Gunnes N, Lie KK, Magnus P, Mjaaland S, Reichborn-Kjennerud T, Schjølberg S, Øyen AS, Levin B, Susser ES, Stoltenberg C, Lipkin WI.

Mol Psychiatry. 2018 Mar;23(3):759-766. doi: 10.1038/mp.2017.119. Epub 2017 Jun 13.

21.

Complete genome sequence of T'Ho virus, a novel putative flavivirus from the Yucatan Peninsula of Mexico.

Briese T, Loroño-Pino MA, Garcia-Rejon JE, Farfan-Ale JA, Machain-Williams C, Dorman KS, Lipkin WI, Blitvich BJ.

Virol J. 2017 Jun 12;14(1):110. doi: 10.1186/s12985-017-0777-6.

22.

Viral Encephalitis of Unknown Cause: Current Perspective and Recent Advances.

Kennedy PGE, Quan PL, Lipkin WI.

Viruses. 2017 Jun 6;9(6). pii: E138. doi: 10.3390/v9060138. Review.

23.

Erratum for Briese et al., "Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis".

Briese T, Kapoor A, Mishra N, Jain K, Kumar A, Jabado OJ, Lipkin WI.

MBio. 2017 May 16;8(3). pii: e00615-17. doi: 10.1128/mBio.00615-17. No abstract available.

24.

Global epidemiology of non-influenza RNA respiratory viruses: data gaps and a growing need for surveillance.

Tang JW, Lam TT, Zaraket H, Lipkin WI, Drews SJ, Hatchette TF, Heraud JM, Koopmans MP; INSPIRE investigators.

Lancet Infect Dis. 2017 Oct;17(10):e320-e326. doi: 10.1016/S1473-3099(17)30238-4. Epub 2017 Apr 28. Review.

25.

Central Nervous System Infection with Borna Disease Virus Causes Kynurenine Pathway Dysregulation and Neurotoxic Quinolinic Acid Production.

Formisano S, Hornig M, Yaddanapudi K, Vasishtha M, Parsons LH, Briese T, Lipkin WI, Williams BL.

J Virol. 2017 Jun 26;91(14). pii: e00673-17. doi: 10.1128/JVI.00673-17. Print 2017 Jul 15.

26.

Fecal metagenomic profiles in subgroups of patients with myalgic encephalomyelitis/chronic fatigue syndrome.

Nagy-Szakal D, Williams BL, Mishra N, Che X, Lee B, Bateman L, Klimas NG, Komaroff AL, Levine S, Montoya JG, Peterson DL, Ramanan D, Jain K, Eddy ML, Hornig M, Lipkin WI.

Microbiome. 2017 Apr 26;5(1):44. doi: 10.1186/s40168-017-0261-y.

27.

Detection of Anaplasma phagocytophilum, Babesia microti, Borrelia burgdorferi, Borrelia miyamotoi, and Powassan Virus in Ticks by a Multiplex Real-Time Reverse Transcription-PCR Assay.

Tokarz R, Tagliafierro T, Cucura DM, Rochlin I, Sameroff S, Lipkin WI.

mSphere. 2017 Apr 19;2(2). pii: e00151-17. doi: 10.1128/mSphere.00151-17. eCollection 2017 Mar-Apr.

28.

Correction for Mahic et al., "Maternal Immunoreactivity to Herpes Simplex Virus 2 and Risk of Autism Spectrum Disorder in Male Offspring".

Mahic M, Mjaaland S, Bøvelstad HM, Gunnes N, Susser E, Bresnahan M, Øyen AS, Levin B, Che X, Hirtz D, Reichborn-Kjennerud T, Schjølberg S, Roth C, Magnus P, Stoltenberg C, Surén P, Hornig M, Lipkin WI.

mSphere. 2017 Apr 12;2(2). pii: e00154-17. doi: 10.1128/mSphere.00154-17. eCollection 2017 Mar-Apr.

29.

Reply to Magaret and Wald, "Autism Link to Herpes Simplex Virus 2 Antibody in Pregnancy Likely To Be Spurious".

Mahic M, Mjaaland S, Susser E, Bresnahan M, Che X, Levin B, Hornig M, Lipkin WI.

mSphere. 2017 Mar 29;2(2). pii: e00113-17. doi: 10.1128/mSphere.00113-17. eCollection 2017 Mar-Apr. No abstract available.

30.

Further Evidence for Bats as the Evolutionary Source of Middle East Respiratory Syndrome Coronavirus.

Anthony SJ, Gilardi K, Menachery VD, Goldstein T, Ssebide B, Mbabazi R, Navarrete-Macias I, Liang E, Wells H, Hicks A, Petrosov A, Byarugaba DK, Debbink K, Dinnon KH, Scobey T, Randell SH, Yount BL, Cranfield M, Johnson CK, Baric RS, Lipkin WI, Mazet JA.

MBio. 2017 Apr 4;8(2). pii: e00373-17. doi: 10.1128/mBio.00373-17.

31.

Immune network analysis of cerebrospinal fluid in myalgic encephalomyelitis/chronic fatigue syndrome with atypical and classical presentations.

Hornig M, Gottschalk CG, Eddy ML, Che X, Ukaigwe JE, Peterson DL, Lipkin WI.

Transl Psychiatry. 2017 Apr 4;7(4):e1080. doi: 10.1038/tp.2017.44.

32.

Maternal Immunoreactivity to Herpes Simplex Virus 2 and Risk of Autism Spectrum Disorder in Male Offspring.

Mahic M, Mjaaland S, Bøvelstad HM, Gunnes N, Susser E, Bresnahan M, Øyen AS, Levin B, Che X, Hirtz D, Reichborn-Kjennerud T, Schjølberg S, Roth C, Magnus P, Stoltenberg C, Surén P, Hornig M, Lipkin WI.

mSphere. 2017 Feb 22;2(1). pii: e00016-17. doi: 10.1128/mSphere.00016-17. eCollection 2017 Jan-Feb. Erratum in: mSphere. 2017 Apr 12;2(2):.

33.

Detection of Tilapia Lake Virus in Clinical Samples by Culturing and Nested Reverse Transcription-PCR.

Kembou Tsofack JE, Zamostiano R, Watted S, Berkowitz A, Rosenbluth E, Mishra N, Briese T, Lipkin WI, Kabuusu RM, Ferguson H, Del Pozo J, Eldar A, Bacharach E.

J Clin Microbiol. 2017 Mar;55(3):759-767. doi: 10.1128/JCM.01808-16. Epub 2016 Dec 14.

34.

Effect of Ex Vivo-Expanded Recipient Regulatory T Cells on Hematopoietic Chimerism and Kidney Allograft Tolerance Across MHC Barriers in Cynomolgus Macaques.

Duran-Struuck R, Sondermeijer HP, Bühler L, Alonso-Guallart P, Zitsman J, Kato Y, Wu A, McMurchy AN, Woodland D, Griesemer A, Martinez M, Boskovic S, Kawai T, Cosimi AB, Wuu CS, Slate A, Mapara M, Baker S, Tokarz R, D'Agati V, Hammer S, Pereira M, Lipkin WI, Wekerle T, Levings M, Sykes M.

Transplantation. 2017 Feb;101(2):274-283. doi: 10.1097/TP.0000000000001559.

35.

Analysis of Arbovirus Isolates from Australia Identifies Novel Bunyaviruses Including a Mapputta Group Virus from Western Australia That Links Gan Gan and Maprik Viruses.

Briese T, Williams DT, Kapoor V, Diviney SM, Certoma A, Wang J, Johansen CA, Chowdhary R, Mackenzie JS, Lipkin WI.

PLoS One. 2016 Oct 20;11(10):e0164868. doi: 10.1371/journal.pone.0164868. eCollection 2016.

36.

Viral Diversity, Prey Preference, and Bartonella Prevalence in Desmodus rotundus in Guatemala.

Wray AK, Olival KJ, Morán D, Lopez MR, Alvarez D, Navarrete-Macias I, Liang E, Simmons NB, Lipkin WI, Daszak P, Anthony SJ.

Ecohealth. 2016 Dec;13(4):761-774. Epub 2016 Sep 22.

37.

Syncytial Hepatitis of Tilapia ( Oreochromis niloticus L.) is Associated With Orthomyxovirus-Like Virions in Hepatocytes.

Del-Pozo J, Mishra N, Kabuusu R, Cheetham S, Eldar A, Bacharach E, Lipkin WI, Ferguson HW.

Vet Pathol. 2017 Jan;54(1):164-170. doi: 10.1177/0300985816658100. Epub 2016 Aug 20.

PMID:
27511312
38.

Narrowing of the Diagnostic Gap of Acute Gastroenteritis in Children 0-6 Years of Age Using a Combination of Classical and Molecular Techniques, Delivers Challenges in Syndromic Approach Diagnostics.

Steyer A, Jevšnik M, Petrovec M, Pokorn M, Grosek Š, Fratnik Steyer A, Šoba B, Uršič T, Cerar Kišek T, Kolenc M, Trkov M, Šparl P, Duraisamy R, Lipkin WI, Terzić S, Kolnik M, Mrvič T, Kapoor A, Strle F.

Pediatr Infect Dis J. 2016 Sep;35(9):e262-70. doi: 10.1097/INF.0000000000001208.

39.

Characterization of a Novel Orthomyxo-like Virus Causing Mass Die-Offs of Tilapia.

Bacharach E, Mishra N, Briese T, Zody MC, Kembou Tsofack JE, Zamostiano R, Berkowitz A, Ng J, Nitido A, Corvelo A, Toussaint NC, Abel Nielsen SC, Hornig M, Del Pozo J, Bloom T, Ferguson H, Eldar A, Lipkin WI.

MBio. 2016 Apr 5;7(2):e00431-16. doi: 10.1128/mBio.00431-16.

40.

A novel hepatovirus identified in wild woodchuck Marmota himalayana.

Yu JM, Li LL, Zhang CY, Lu S, Ao YY, Gao HC, Xie ZP, Xie GC, Sun XM, Pang LL, Xu JG, Lipkin WI, Duan ZJ.

Sci Rep. 2016 Feb 29;6:22361. doi: 10.1038/srep22361.

41.

Merida virus, a putative novel rhabdovirus discovered in Culex and Ochlerotatus spp. mosquitoes in the Yucatan Peninsula of Mexico.

Charles J, Firth AE, Loroño-Pino MA, Garcia-Rejon JE, Farfan-Ale JA, Lipkin WI, Blitvich BJ, Briese T.

J Gen Virol. 2016 Apr;97(4):977-87. doi: 10.1099/jgv.0.000424. Epub 2016 Feb 11.

42.

Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform.

Kilianski A, Carcel P, Yao S, Roth P, Schulte J, Donarum GB, Fochler ET, Hill JM, Liem AT, Wiley MR, Ladner JT, Pfeffer BP, Elliot O, Petrosov A, Jima DD, Vallard TG, Melendrez MC, Skowronski E, Quan PL, Lipkin WI, Gibbons HS, Hirschberg DL, Palacios GF, Rosenzweig CN.

BMC Bioinformatics. 2015 Dec 29;16:416. doi: 10.1186/s12859-015-0840-5.

43.

Molecular Survey of Zoonotic Agents in Rodents and Other Small Mammals in Croatia.

Tadin A, Tokarz R, Markotić A, Margaletić J, Turk N, Habuš J, Svoboda P, Vucelja M, Desai A, Jain K, Lipkin WI.

Am J Trop Med Hyg. 2016 Feb;94(2):466-73. doi: 10.4269/ajtmh.15-0517. Epub 2015 Dec 28.

44.

Correction: Adenovirus and Herpesvirus Diversity in Free-Ranging Great Apes in the Sangha Region of the Republic of Congo.

Seimon TA, Olson SH, Lee KJ, Rosen G, Ondzie A, Cameron K, Reed P, Anthony SJ, Joly DO, Karesh WB, McAloose D, Lipkin WI.

PLoS One. 2015 Nov 10;10(11):e0142766. doi: 10.1371/journal.pone.0142766. eCollection 2015. No abstract available.

45.

Chronic fatigue syndrome/myalgic encephalomyelitis (CFS/ME) is associated with pandemic influenza infection, but not with an adjuvanted pandemic influenza vaccine.

Magnus P, Gunnes N, Tveito K, Bakken IJ, Ghaderi S, Stoltenberg C, Hornig M, Lipkin WI, Trogstad L, Håberg SE.

Vaccine. 2015 Nov 17;33(46):6173-7. doi: 10.1016/j.vaccine.2015.10.018. Epub 2015 Oct 17.

PMID:
26475444
46.

Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis.

Briese T, Kapoor A, Mishra N, Jain K, Kumar A, Jabado OJ, Lipkin WI.

MBio. 2015 Sep 22;6(5):e01491-15. doi: 10.1128/mBio.01491-15. Erratum in: MBio. 2017 May 16;8(3):.

47.

Virome Analysis of Transfusion Recipients Reveals a Novel Human Virus That Shares Genomic Features with Hepaciviruses and Pegiviruses.

Kapoor A, Kumar A, Simmonds P, Bhuva N, Singh Chauhan L, Lee B, Sall AA, Jin Z, Morse SS, Shaz B, Burbelo PD, Lipkin WI.

MBio. 2015 Sep 22;6(5):e01466-15. doi: 10.1128/mBio.01466-15.

48.

Non-random patterns in viral diversity.

Anthony SJ, Islam A, Johnson C, Navarrete-Macias I, Liang E, Jain K, Hitchens PL, Che X, Soloyvov A, Hicks AL, Ojeda-Flores R, Zambrana-Torrelio C, Ulrich W, Rostal MK, Petrosov A, Garcia J, Haider N, Wolfe N, Goldstein T, Morse SS, Rahman M, Epstein JH, Mazet JK, Daszak P, Lipkin WI.

Nat Commun. 2015 Sep 22;6:8147. doi: 10.1038/ncomms9147.

49.

Middle East Respiratory Syndrome Coronavirus Recombination and the Evolution of Science and Public Health in China.

Lipkin WI.

MBio. 2015 Sep 8;6(5):e01381-15. doi: 10.1128/mBio.01381-15. No abstract available.

50.

Preliminary Survey of Ectoparasites and Associated Pathogens from Norway Rats in New York City.

Frye MJ, Firth C, Bhat M, Firth MA, Che X, Lee D, Williams SH, Lipkin WI.

J Med Entomol. 2015 Mar;52(2):253-9. doi: 10.1093/jme/tjv014. Epub 2015 Mar 2.

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