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Items: 15

1.

Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression.

Fasolino M, Goldman N, Wang W, Cattau B, Zhou Y, Petrovic J, Link VM, Cote A, Chandra A, Silverman M, Joyce EF, Little SC; HPAP Consortium, Kaestner KH, Naji A, Raj A, Henao-Mejia J, Faryabi RB, Vahedi G.

Immunity. 2020 Feb 6. pii: S1074-7613(20)30030-3. doi: 10.1016/j.immuni.2020.01.003. [Epub ahead of print]

PMID:
32049053
2.

Transcriptomic and epigenetic mechanisms underlying myeloid diversity in the lung.

Sajti E, Link VM, Ouyang Z, Spann NJ, Westin E, Romanoski CE, Fonseca GJ, Prince LS, Glass CK.

Nat Immunol. 2020 Feb;21(2):221-231. doi: 10.1038/s41590-019-0582-z. Epub 2020 Jan 20.

PMID:
31959980
3.

Keratinocyte-intrinsic MHCII expression controls microbiota-induced Th1 cell responses.

Tamoutounour S, Han SJ, Deckers J, Constantinides MG, Hurabielle C, Harrison OJ, Bouladoux N, Linehan JL, Link VM, Vujkovic-Cvijin I, Perez-Chaparro PJ, Rosshart SP, Rehermann B, Lazarevic V, Belkaid Y.

Proc Natl Acad Sci U S A. 2019 Nov 19;116(47):23643-23652. doi: 10.1073/pnas.1912432116. Epub 2019 Oct 31.

PMID:
31672911
4.

MAIT cells are imprinted by the microbiota in early life and promote tissue repair.

Constantinides MG, Link VM, Tamoutounour S, Wong AC, Perez-Chaparro PJ, Han SJ, Chen YE, Li K, Farhat S, Weckel A, Krishnamurthy SR, Vujkovic-Cvijin I, Linehan JL, Bouladoux N, Merrill ED, Roy S, Cua DJ, Adams EJ, Bhandoola A, Scharschmidt TC, Aubé J, Fischbach MA, Belkaid Y.

Science. 2019 Oct 25;366(6464). pii: eaax6624. doi: 10.1126/science.aax6624.

PMID:
31649166
5.

Liver-Derived Signals Sequentially Reprogram Myeloid Enhancers to Initiate and Maintain Kupffer Cell Identity.

Sakai M, Troutman TD, Seidman JS, Ouyang Z, Spann NJ, Abe Y, Ego KM, Bruni CM, Deng Z, Schlachetzki JCM, Nott A, Bennett H, Chang J, Vu BT, Pasillas MP, Link VM, Texari L, Heinz S, Thompson BM, McDonald JG, Geissmann F, Glass CK.

Immunity. 2019 Oct 15;51(4):655-670.e8. doi: 10.1016/j.immuni.2019.09.002. Epub 2019 Oct 3.

PMID:
31587991
6.

The Bone Marrow Protects and Optimizes Immunological Memory during Dietary Restriction.

Collins N, Han SJ, Enamorado M, Link VM, Huang B, Moseman EA, Kishton RJ, Shannon JP, Dixit D, Schwab SR, Hickman HD, Restifo NP, McGavern DB, Schwartzberg PL, Belkaid Y.

Cell. 2019 Aug 22;178(5):1088-1101.e15. doi: 10.1016/j.cell.2019.07.049.

7.

Diverse motif ensembles specify non-redundant DNA binding activities of AP-1 family members in macrophages.

Fonseca GJ, Tao J, Westin EM, Duttke SH, Spann NJ, Strid T, Shen Z, Stender JD, Sakai M, Link VM, Benner C, Glass CK.

Nat Commun. 2019 Jan 24;10(1):414. doi: 10.1038/s41467-018-08236-0.

8.

MMARGE: Motif Mutation Analysis for Regulatory Genomic Elements.

Link VM, Romanoski CE, Metzler D, Glass CK.

Nucleic Acids Res. 2018 Aug 21;46(14):7006-7021. doi: 10.1093/nar/gky491.

9.

Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function.

Link VM, Duttke SH, Chun HB, Holtman IR, Westin E, Hoeksema MA, Abe Y, Skola D, Romanoski CE, Tao J, Fonseca GJ, Troutman TD, Spann NJ, Strid T, Sakai M, Yu M, Hu R, Fang R, Metzler D, Ren B, Glass CK.

Cell. 2018 Jun 14;173(7):1796-1809.e17. doi: 10.1016/j.cell.2018.04.018. Epub 2018 May 17.

10.

Sympathetic neuron-associated macrophages contribute to obesity by importing and metabolizing norepinephrine.

Pirzgalska RM, Seixas E, Seidman JS, Link VM, Sánchez NM, Mahú I, Mendes R, Gres V, Kubasova N, Morris I, Arús BA, Larabee CM, Vasques M, Tortosa F, Sousa AL, Anandan S, Tranfield E, Hahn MK, Iannacone M, Spann NJ, Glass CK, Domingos AI.

Nat Med. 2017 Nov;23(11):1309-1318. doi: 10.1038/nm.4422. Epub 2017 Oct 9.

PMID:
29035364
11.

SREBP1 Contributes to Resolution of Pro-inflammatory TLR4 Signaling by Reprogramming Fatty Acid Metabolism.

Oishi Y, Spann NJ, Link VM, Muse ED, Strid T, Edillor C, Kolar MJ, Matsuzaka T, Hayakawa S, Tao J, Kaikkonen MU, Carlin AF, Lam MT, Manabe I, Shimano H, Saghatelian A, Glass CK.

Cell Metab. 2017 Feb 7;25(2):412-427. doi: 10.1016/j.cmet.2016.11.009. Epub 2016 Dec 29.

12.

Tissue damage drives co-localization of NF-κB, Smad3, and Nrf2 to direct Rev-erb sensitive wound repair in mouse macrophages.

Eichenfield DZ, Troutman TD, Link VM, Lam MT, Cho H, Gosselin D, Spann NJ, Lesch HP, Tao J, Muto J, Gallo RL, Evans RM, Glass CK.

Elife. 2016 Jul 27;5. pii: e13024. doi: 10.7554/eLife.13024.

13.

Mechanisms Underlying the Selection and Function of Macrophage-Specific Enhancers.

Link VM, Gosselin D, Glass CK.

Cold Spring Harb Symp Quant Biol. 2015;80:213-21. doi: 10.1101/sqb.2015.80.027367. Epub 2015 Nov 18. Review.

14.

Exploiting genomics and natural genetic variation to decode macrophage enhancers.

Romanoski CE, Link VM, Heinz S, Glass CK.

Trends Immunol. 2015 Sep;36(9):507-18. doi: 10.1016/j.it.2015.07.006. Epub 2015 Aug 19. Review.

15.

Environment drives selection and function of enhancers controlling tissue-specific macrophage identities.

Gosselin D, Link VM, Romanoski CE, Fonseca GJ, Eichenfield DZ, Spann NJ, Stender JD, Chun HB, Garner H, Geissmann F, Glass CK.

Cell. 2014 Dec 4;159(6):1327-40. doi: 10.1016/j.cell.2014.11.023.

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