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Multi-omics analyses reveal epigenomics basis for cotton somatic embryogenesis through successive regeneration acclimation (SRA) process.

Li J, Wang M, Li Y, Zhang Q, Lindsey K, Daniell H, Jin S, Zhang X.

Plant Biotechnol J. 2018 Jul 12. doi: 10.1111/pbi.12988. [Epub ahead of print]


Automated Real-Time Collection of Pathogen-Specific Diagnostic Data: Syndromic Infectious Disease Epidemiology.

Meyers L, Ginocchio CC, Faucett AN, Nolte FS, Gesteland PH, Leber A, Janowiak D, Donovan V, Dien Bard J, Spitzer S, Stellrecht KA, Salimnia H, Selvarangan R, Juretschko S, Daly JA, Wallentine JC, Lindsey K, Moore F, Reed SL, Aguero-Rosenfeld M, Fey PD, Storch GA, Melnick SJ, Robinson CC, Meredith JF, Cook CV, Nelson RK, Jones JD, Scarpino SV, Althouse BM, Ririe KM, Malin BA, Poritz MA.

JMIR Public Health Surveill. 2018 Jul 6;4(3):e59. doi: 10.2196/publichealth.9876.


Polyoma virus-associated carcinomas of the urologic tract: a clinicopathologic and molecular study.

Sirohi D, Vaske C, Sanborn Z, Smith SC, Don MD, Lindsey KG, Federman S, Vankalakunti M, Koo J, Bose S, Peralta-Venturina M, Ziffle JV, Grenert JP, Miller S, Chiu C, Amin MB, Simko JP, Stohr BA, Luthringer DJ.

Mod Pathol. 2018 May 15. doi: 10.1038/s41379-018-0065-z. [Epub ahead of print]


Epidermal expression of a sterol biosynthesis gene regulates root growth by a non-cell-autonomous mechanism in Arabidopsis.

Short E, Leighton M, Imriz G, Liu D, Cope-Selby N, Hetherington F, Smertenko A, Hussey PJ, Topping JF, Lindsey K.

Development. 2018 May 15;145(10). pii: dev160572. doi: 10.1242/dev.160572.


ALT-803, an IL-15 superagonist, in combination with nivolumab in patients with metastatic non-small cell lung cancer: a non-randomised, open-label, phase 1b trial.

Wrangle JM, Velcheti V, Patel MR, Garrett-Mayer E, Hill EG, Ravenel JG, Miller JS, Farhad M, Anderton K, Lindsey K, Taffaro-Neskey M, Sherman C, Suriano S, Swiderska-Syn M, Sion A, Harris J, Edwards AR, Rytlewski JA, Sanders CM, Yusko EC, Robinson MD, Krieg C, Redmond WL, Egan JO, Rhode PR, Jeng EK, Rock AD, Wong HC, Rubinstein MP.

Lancet Oncol. 2018 May;19(5):694-704. doi: 10.1016/S1470-2045(18)30148-7. Epub 2018 Apr 5.


Bayesian uncertainty analysis for complex systems biology models: emulation, global parameter searches and evaluation of gene functions.

Vernon I, Liu J, Goldstein M, Rowe J, Topping J, Lindsey K.

BMC Syst Biol. 2018 Jan 2;12(1):1. doi: 10.1186/s12918-017-0484-3.


The GhmiR157a-GhSPL10 regulatory module controls initial cellular dedifferentiation and callus proliferation in cotton by modulating ethylene-mediated flavonoid biosynthesis.

Wang L, Liu N, Wang T, Li J, Wen T, Yang X, Lindsey K, Zhang X.

J Exp Bot. 2018 Feb 23;69(5):1081-1093. doi: 10.1093/jxb/erx475.


For the Love of Nature: Exploring the Importance of Species Diversity and Micro-Variables Associated with Favorite Outdoor Places.

Schebella MF, Weber D, Lindsey K, Daniels CB.

Front Psychol. 2017 Dec 1;8:2094. doi: 10.3389/fpsyg.2017.02094. eCollection 2017.


Laccase GhLac1 Modulates Broad-Spectrum Biotic Stress Tolerance via Manipulating Phenylpropanoid Pathway and Jasmonic Acid Synthesis.

Hu Q, Min L, Yang X, Jin S, Zhang L, Li Y, Ma Y, Qi X, Li D, Liu H, Lindsey K, Zhu L, Zhang X.

Plant Physiol. 2018 Feb;176(2):1808-1823. doi: 10.1104/pp.17.01628. Epub 2017 Dec 11.


Crosstalk Complexities between Auxin, Cytokinin, and Ethylene in Arabidopsis Root Development: From Experiments to Systems Modeling, and Back Again.

Liu J, Moore S, Chen C, Lindsey K.

Mol Plant. 2017 Dec 4;10(12):1480-1496. doi: 10.1016/j.molp.2017.11.002. Epub 2017 Nov 21. Review.


Long noncoding RNAs involve in resistance to Verticillium dahliae, a fungal disease in cotton.

Zhang L, Wang M, Li N, Wang H, Qiu P, Pei L, Xu Z, Wang T, Gao E, Liu J, Liu S, Hu Q, Miao Y, Lindsey K, Tu L, Zhu L, Zhang X.

Plant Biotechnol J. 2018 Jun;16(6):1172-1185. doi: 10.1111/pbi.12861. Epub 2017 Dec 21.


Medicinal Mascarene Aloes: An audit of their phytotherapeutic potential.

Lobine D, Cummins I, Govinden-Soulange J, Ranghoo-Sanmukhiya M, Lindsey K, Chazot PL, Ambler CA, Grellscheid S, Sharples G, Lall N, Lambrechts IA, Lavergne C, Howes MR.

Fitoterapia. 2018 Jan;124:120-126. doi: 10.1016/j.fitote.2017.10.010. Epub 2017 Oct 21.


Cytology and high risk HPV testing in cervical cancer screening program: Outcome of 3-year follow-up in an academic institute.

Yang J, Nolte FS, Chajewski OS, Lindsey KG, Houser PM, Pellicier J, Wang Q, Ehsani L.

Diagn Cytopathol. 2018 Jan;46(1):22-27. doi: 10.1002/dc.23843. Epub 2017 Oct 19.


Bio-prospecting endemic Mascarene Aloes for potential neuroprotectants.

Lobine D, Howes MR, Cummins I, Govinden-Soulange J, Ranghoo-Sanmukhiya M, Lindsey K, Chazot PL.

Phytother Res. 2017 Dec;31(12):1926-1934. doi: 10.1002/ptr.5941. Epub 2017 Oct 11.


A global survey of alternative splicing in allopolyploid cotton: landscape, complexity and regulation.

Wang M, Wang P, Liang F, Ye Z, Li J, Shen C, Pei L, Wang F, Hu J, Tu L, Lindsey K, He D, Zhang X.

New Phytol. 2018 Jan;217(1):163-178. doi: 10.1111/nph.14762. Epub 2017 Sep 11.


A transgenic strategy for controlling plant bugs (Adelphocoris suturalis) through expression of double-stranded RNA homologous to fatty acyl-coenzyme A reductase in cotton.

Luo J, Liang S, Li J, Xu Z, Li L, Zhu B, Li Z, Lei C, Lindsey K, Chen L, Jin S, Zhang X.

New Phytol. 2017 Aug;215(3):1173-1185. doi: 10.1111/nph.14636. Epub 2017 Jun 13.


Myeloid sarcoma identified on liquid-based cervical cytology samples: A report of two cases.

Snider JS, Eichel Y, Caudell AM, Chajewski OS, Yang J, Lindsey KG.

Diagn Cytopathol. 2017 Oct;45(10):953-957. doi: 10.1002/dc.23763. Epub 2017 May 31.


Enterolactone Induces G1-phase Cell Cycle Arrest in Nonsmall Cell Lung Cancer Cells by Downregulating Cyclins and Cyclin-dependent Kinases.

Chikara S, Lindsey K, Dhillon H, Mamidi S, Kittilson J, Christofidou-Solomidou M, Reindl KM.

Nutr Cancer. 2017 May-Jun;69(4):652-662. doi: 10.1080/01635581.2017.1296169. Epub 2017 Mar 21.


Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication.

Wang M, Tu L, Lin M, Lin Z, Wang P, Yang Q, Ye Z, Shen C, Li J, Zhang L, Zhou X, Nie X, Li Z, Guo K, Ma Y, Huang C, Jin S, Zhu L, Yang X, Min L, Yuan D, Zhang Q, Lindsey K, Zhang X.

Nat Genet. 2017 Apr;49(4):579-587. doi: 10.1038/ng.3807. Epub 2017 Mar 6.


A recovery principle provides insight into auxin pattern control in the Arabidopsis root.

Moore S, Liu J, Zhang X, Lindsey K.

Sci Rep. 2017 Feb 21;7:43004. doi: 10.1038/srep43004.


Enterolactone alters FAK-Src signaling and suppresses migration and invasion of lung cancer cell lines.

Chikara S, Lindsey K, Borowicz P, Christofidou-Solomidou M, Reindl KM.

BMC Complement Altern Med. 2017 Jan 9;17(1):30. doi: 10.1186/s12906-016-1512-3.


Young Investigator Challenge: A novel, simple method for cell block preparation, implementation, and use over 2 years.

Lindsey KG, Houser PM, Shotsberger-Gray W, Chajewski OS, Yang J.

Cancer Cytopathol. 2016 Dec;124(12):885-892. doi: 10.1002/cncy.21795. Epub 2016 Nov 9.


Correcting for Blood Arrival Time in Global Mean Regression Enhances Functional Connectivity Analysis of Resting State fMRI-BOLD Signals.

Erdoğan SB, Tong Y, Hocke LM, Lindsey KP, deB Frederick B.

Front Hum Neurosci. 2016 Jun 28;10:311. doi: 10.3389/fnhum.2016.00311. eCollection 2016.


Systemic Low-Frequency Oscillations in BOLD Signal Vary with Tissue Type.

Tong Y, Hocke LM, Lindsey KP, Erdoğan SB, Vitaliano G, Caine CE, Frederick Bd.

Front Neurosci. 2016 Jun 30;10:313. doi: 10.3389/fnins.2016.00313. eCollection 2016.


A case of erythropoietic protoporphyria.

Lindsey K, Burch M, Krause JR.

Proc (Bayl Univ Med Cent). 2016 Jul;29(3):311-2.


Cytological diagnosis of metastatic malignant melanoma by fine-needle aspiration biopsy.

Lindsey KG, Ingram C, Bergeron J, Yang J.

Semin Diagn Pathol. 2016 Jul;33(4):198-203. doi: 10.1053/j.semdp.2016.04.004. Epub 2016 Apr 16. Review.


ROS Homeostasis Regulates Somatic Embryogenesis via the Regulation of Auxin Signaling in Cotton.

Zhou T, Yang X, Guo K, Deng J, Xu J, Gao W, Lindsey K, Zhang X.

Mol Cell Proteomics. 2016 Jun;15(6):2108-24. doi: 10.1074/mcp.M115.049338. Epub 2016 Apr 12.


Cytopathologic features of clear cell papillary renal cell carcinoma: A recently described variant to be considered in the differential diagnosis of clear cell renal epithelial neoplasms.

Sayeed S, Lindsey KG, Baras AS, Jackson C, Powers CN, Uram-Tuculescu C, Smith SC.

Cancer Cytopathol. 2016 Aug;124(8):565-72. doi: 10.1002/cncy.21721. Epub 2016 Apr 7.


Using routine data to improve palliative and end of life care.

Davies JM, Gao W, Sleeman KE, Lindsey K, Murtagh FE, Teno JM, Deliens L, Wee B, Higginson IJ, Verne J.

BMJ Support Palliat Care. 2016 Sep;6(3):257-62. doi: 10.1136/bmjspcare-2015-000994. Epub 2016 Feb 28.


Abscisic acid regulates root growth under osmotic stress conditions via an interacting hormonal network with cytokinin, ethylene and auxin.

Rowe JH, Topping JF, Liu J, Lindsey K.

New Phytol. 2016 Jul;211(1):225-39. doi: 10.1111/nph.13882. Epub 2016 Feb 18.


Perfusion information extracted from resting state functional magnetic resonance imaging.

Tong Y, Lindsey KP, Hocke LM, Vitaliano G, Mintzopoulos D, Frederick BD.

J Cereb Blood Flow Metab. 2017 Feb;37(2):564-576. doi: 10.1177/0271678X16631755. Epub 2016 Jul 20.


Comparison of peripheral near-infrared spectroscopy low-frequency oscillations to other denoising methods in resting state functional MRI with ultrahigh temporal resolution.

Hocke LM, Tong Y, Lindsey KP, de B Frederick B.

Magn Reson Med. 2016 Dec;76(6):1697-1707. doi: 10.1002/mrm.26038. Epub 2016 Feb 7.


Time delay processing of hypercapnic fMRI allows quantitative parameterization of cerebrovascular reactivity and blood flow delays.

Donahue MJ, Strother MK, Lindsey KP, Hocke LM, Tong Y, Frederick BD.

J Cereb Blood Flow Metab. 2016 Oct;36(10):1767-1779. Epub 2015 Oct 19.


Effect of a Benzalkonium Chloride Surfactant-Sodium Hypochlorite Combination on Elimination of Enterococcus faecalis.

Baron A, Lindsey K, Sidow SJ, Dickinson D, Chuang A, McPherson JC 3rd.

J Endod. 2016 Jan;42(1):145-9. doi: 10.1016/j.joen.2015.08.035. Epub 2015 Nov 11.


Suppression of the homeobox gene HDTF1 enhances resistance to Verticillium dahliae and Botrytis cinerea in cotton.

Gao W, Long L, Xu L, Lindsey K, Zhang X, Zhu L.

J Integr Plant Biol. 2016 May;58(5):503-13. doi: 10.1111/jipb.12432. Epub 2015 Nov 21.


Some fundamental aspects of modeling auxin patterning in the context of auxin-ethylene-cytokinin crosstalk.

Moore S, Zhang X, Liu J, Lindsey K.

Plant Signal Behav. 2015;10(10):e1056424. doi: 10.1080/15592324.2015.1056424. Epub 2015 Aug 3.


Turn-taking: a case study of early gesture and word use in answering WHERE and WHICH questions.

Clark EV, Lindsey KL.

Front Psychol. 2015 Jul 8;6:890. doi: 10.3389/fpsyg.2015.00890. eCollection 2015.


Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypium spp.).

Wang M, Yuan D, Tu L, Gao W, He Y, Hu H, Wang P, Liu N, Lindsey K, Zhang X.

New Phytol. 2015 Sep;207(4):1181-97. doi: 10.1111/nph.13429. Epub 2015 Apr 28.


Spatiotemporal modelling of hormonal crosstalk explains the level and patterning of hormones and gene expression in Arabidopsis thaliana wild-type and mutant roots.

Moore S, Zhang X, Mudge A, Rowe JH, Topping JF, Liu J, Lindsey K.

New Phytol. 2015 Sep;207(4):1110-22. doi: 10.1111/nph.13421. Epub 2015 Apr 23.


Pharmacist-coordinated multidisciplinary hospital follow-up visits improve patient outcomes.

Cavanaugh JJ, Lindsey KN, Shilliday BB, Ratner SP.

J Manag Care Spec Pharm. 2015 Mar;21(3):256-60.


Bronchogenic squamous cell carcinoma with soft-tissue metastasis to the hand: an unusual case presentation and review of the literature.

Walton ZJ, Holmes RE, Chapin RW, Lindsey KG, Leddy LR.

Am J Orthop (Belle Mead NJ). 2014 Dec;43(12):E324-7. Review.


Acute kidney injury after cardiac surgery: is minocycline protective?

Golestaneh L, Lindsey K, Malhotra P, Kargoli F, Farkas E, Barner H, Qazi R, Schmidt A, Rauchman M, Al-Aly Z, Johnson R, Martin K, Dagher P, Friedman A, El-Achkar TM.

J Nephrol. 2015 Apr;28(2):193-9. doi: 10.1007/s40620-014-0152-2. Epub 2014 Oct 28.


Programmed cell death during development of cowpea (Vigna unguiculata (L.) Walp.) seed coat.

Lima NB, Trindade FG, da Cunha M, Oliveira AE, Topping J, Lindsey K, Fernandes KV.

Plant Cell Environ. 2015 Apr;38(4):718-28. doi: 10.1111/pce.12432. Epub 2014 Oct 1.


Small RNA and degradome profiling reveals a role for miRNAs and their targets in the developing fibers of Gossypium barbadense.

Liu N, Tu L, Tang W, Gao W, Lindsey K, Zhang X.

Plant J. 2014 Oct;80(2):331-44. doi: 10.1111/tpj.12636. Epub 2014 Sep 15.


Evaluation of a new filing system's ability to maintain canal morphology.

Thompson M, Sidow SJ, Lindsey K, Chuang A, McPherson JC 3rd.

J Endod. 2014 Jun;40(6):867-70. doi: 10.1016/j.joen.2013.10.016. Epub 2013 Nov 20.


Hormonal crosstalk for root development: a combined experimental and modeling perspective.

Liu J, Rowe J, Lindsey K.

Front Plant Sci. 2014 Mar 27;5:116. doi: 10.3389/fpls.2014.00116. eCollection 2014. Review.


Regaining apical patency after obturation with gutta-percha and a sealer containing mineral trioxide aggregate.

Carpenter MT, Sidow SJ, Lindsey KW, Chuang A, McPherson JC 3rd.

J Endod. 2014 Apr;40(4):588-90. doi: 10.1016/j.joen.2013.10.020. Epub 2013 Nov 14.


Supporting care integration with Electronic Palliative Care Coordination Systems (EPaCCS).

Lindsey K, Hayes A.

Int J Palliat Nurs. 2014 Feb;20(2):60-1. No abstract available.


Elucidating the regulation of complex signalling systems in plant cells.

Liu J, Lindsey K, Hussey PJ.

Biochem Soc Trans. 2014 Feb;42(1):219-23. doi: 10.1042/BST20130090. Review.


The calcium sensor GhCaM7 promotes cotton fiber elongation by modulating reactive oxygen species (ROS) production.

Tang W, Tu L, Yang X, Tan J, Deng F, Hao J, Guo K, Lindsey K, Zhang X.

New Phytol. 2014 Apr;202(2):509-20. doi: 10.1111/nph.12676. Epub 2014 Jan 21.

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