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Items: 38

1.

Systematic Detection of Amino Acid Substitutions in Proteomes Reveals Mechanistic Basis of Ribosome Errors and Selection for Translation Fidelity.

Mordret E, Dahan O, Asraf O, Rak R, Yehonadav A, Barnabas GD, Cox J, Geiger T, Lindner AB, Pilpel Y.

Mol Cell. 2019 Aug 8;75(3):427-441.e5. doi: 10.1016/j.molcel.2019.06.041. Epub 2019 Jul 25.

PMID:
31353208
2.

A microfluidic device for inferring metabolic landscapes in yeast monolayer colonies.

Marinkovic ZS, Vulin C, Acman M, Song X, Di Meglio JM, Lindner AB, Hersen P.

Elife. 2019 Jul 1;8. pii: e47951. doi: 10.7554/eLife.47951.

3.

Temporal scaling of aging as an adaptive strategy of Escherichia coli.

Yang Y, Santos AL, Xu L, Lotton C, Taddei F, Lindner AB.

Sci Adv. 2019 May 29;5(5):eaaw2069. doi: 10.1126/sciadv.aaw2069. eCollection 2019 May.

4.

Two stochastic processes shape diverse senescence patterns in a single-cell organism.

Steiner UK, Lenart A, Ni M, Chen P, Song X, Taddei F, Vaupel JW, Lindner AB.

Evolution. 2019 Apr;73(4):847-857. doi: 10.1111/evo.13708. Epub 2019 Mar 14.

PMID:
30816556
5.

The Good, the Bad, and the Ugly of ROS: New Insights on Aging and Aging-Related Diseases from Eukaryotic and Prokaryotic Model Organisms.

Santos AL, Sinha S, Lindner AB.

Oxid Med Cell Longev. 2018 Mar 18;2018:1941285. doi: 10.1155/2018/1941285. eCollection 2018. Review.

6.

Protein Posttranslational Modifications: Roles in Aging and Age-Related Disease.

Santos AL, Lindner AB.

Oxid Med Cell Longev. 2017;2017:5716409. doi: 10.1155/2017/5716409. Epub 2017 Aug 15. Review.

7.

Indirect Fitness Benefits Enable the Spread of Host Genes Promoting Costly Transfer of Beneficial Plasmids.

Dimitriu T, Misevic D, Lotton C, Brown SP, Lindner AB, Taddei F.

PLoS Biol. 2016 Jun 7;14(6):e1002478. doi: 10.1371/journal.pbio.1002478. eCollection 2016 Jun.

8.

Phage-mediated Delivery of Targeted sRNA Constructs to Knock Down Gene Expression in E. coli.

Bernheim AG, Libis VK, Lindner AB, Wintermute EH.

J Vis Exp. 2016 Mar 20;(109). doi: 10.3791/53618.

9.

A synthetic growth switch based on controlled expression of RNA polymerase.

Izard J, Gomez Balderas CD, Ropers D, Lacour S, Song X, Yang Y, Lindner AB, Geiselmann J, de Jong H.

Mol Syst Biol. 2015 Nov 23;11(11):840. doi: 10.15252/msb.20156382.

10.

Mobile genetic elements are involved in bacterial sociality.

Dimitriu T, Misevic D, Lindner AB, Taddei F.

Mob Genet Elements. 2015 Feb 4;5(1):7-11. eCollection 2015 Jan-Feb.

11.

Shape matters: lifecycle of cooperative patches promotes cooperation in bulky populations.

Misevic D, Frénoy A, Lindner AB, Taddei F.

Evolution. 2015 Mar;69(3):788-802. doi: 10.1111/evo.12616. Epub 2015 Feb 27.

12.

Silencing of antibiotic resistance in E. coli with engineered phage bearing small regulatory RNAs.

Libis VK, Bernheim AG, Basier C, Jaramillo-Riveri S, Deyell M, Aghoghogbe I, Atanaskovic I, Bencherif AC, Benony M, Koutsoubelis N, Löchner AC, Marinkovic ZS, Zahra S, Zegman Y, Lindner AB, Wintermute EH.

ACS Synth Biol. 2014 Dec 19;3(12):1003-6. doi: 10.1021/sb500033d.

PMID:
25524110
13.

In situ characterization of mycobacterial growth inhibition by lytic enzymes expressed in vectorized E. coli.

Atanaskovic I, Bencherif AC, Deyell M, Jaramillo-Riveri S, Benony M, Bernheim AG, Libis VK, Koutsoubelis N, Zegman Y, Löchner AC, Basier C, Aghoghogbe I, Marinkovic ZS, Zahra S, Toulouze M, Lindner AB, Wintermute EH.

ACS Synth Biol. 2014 Dec 19;3(12):932-4. doi: 10.1021/sb500039z. Epub 2014 Dec 11.

PMID:
25408994
14.

Genetic information transfer promotes cooperation in bacteria.

Dimitriu T, Lotton C, Bénard-Capelle J, Misevic D, Brown SP, Lindner AB, Taddei F.

Proc Natl Acad Sci U S A. 2014 Jul 29;111(30):11103-8. doi: 10.1073/pnas.1406840111. Epub 2014 Jul 14.

15.

Growing yeast into cylindrical colonies.

Vulin C, Di Meglio JM, Lindner AB, Daerr A, Murray A, Hersen P.

Biophys J. 2014 May 20;106(10):2214-21. doi: 10.1016/j.bpj.2014.02.040.

16.

Nanoscale probing the kinetics of oriented bacterial cell growth using atomic force microscopy.

Chen P, Xu L, Liu J, Hol FJ, Keymer JE, Taddei F, Han D, Lindner AB.

Small. 2014 Aug 13;10(15):3018-25. doi: 10.1002/smll.201303724. Epub 2014 Apr 6.

PMID:
24706390
17.

Direct assessment in bacteria of prionoid propagation and phenotype selection by Hsp70 chaperone.

Gasset-Rosa F, Coquel AS, Moreno-Del Álamo M, Chen P, Song X, Serrano AM, Fernández-Tresguerres ME, Moreno-Díaz de la Espina S, Lindner AB, Giraldo R.

Mol Microbiol. 2014 Mar;91(6):1070-87. doi: 10.1111/mmi.12518. Epub 2014 Feb 9.

18.

Localization of protein aggregation in Escherichia coli is governed by diffusion and nucleoid macromolecular crowding effect.

Coquel AS, Jacob JP, Primet M, Demarez A, Dimiccoli M, Julou T, Moisan L, Lindner AB, Berry H.

PLoS Comput Biol. 2013 Apr;9(4):e1003038. doi: 10.1371/journal.pcbi.1003038. Epub 2013 Apr 25.

19.

Pre-disposition and epigenetics govern variation in bacterial survival upon stress.

Ni M, Decrulle AL, Fontaine F, Demarez A, Taddei F, Lindner AB.

PLoS Genet. 2012;8(12):e1003148. doi: 10.1371/journal.pgen.1003148. Epub 2012 Dec 20.

20.

Designing and using RNA scaffolds to assemble proteins in vivo.

Delebecque CJ, Silver PA, Lindner AB.

Nat Protoc. 2012 Oct;7(10):1797-807. doi: 10.1038/nprot.2012.102. Epub 2012 Sep 6.

PMID:
22955695
21.

Organization of intracellular reactions with rationally designed RNA assemblies.

Delebecque CJ, Lindner AB, Silver PA, Aldaye FA.

Science. 2011 Jul 22;333(6041):470-4. doi: 10.1126/science.1206938. Epub 2011 Jun 23.

22.

Evidence for an evolutionary antagonism between Mrr and Type III modification systems.

Tesfazgi Mebrhatu M, Wywial E, Ghosh A, Michiels CW, Lindner AB, Taddei F, Bujnicki JM, Van Melderen L, Aertsen A.

Nucleic Acids Res. 2011 Aug;39(14):5991-6001. doi: 10.1093/nar/gkr219. Epub 2011 Apr 19.

23.

Emergence of variability in isogenic Escherichia coli populations infected by a filamentous virus.

De Paepe M, De Monte S, Robert L, Lindner AB, Taddei F.

PLoS One. 2010 Jul 27;5(7):e11823. doi: 10.1371/journal.pone.0011823.

24.

Pre-dispositions and epigenetic inheritance in the Escherichia coli lactose operon bistable switch.

Robert L, Paul G, Chen Y, Taddei F, Baigl D, Lindner AB.

Mol Syst Biol. 2010 Apr 13;6:357. doi: 10.1038/msb.2010.12.

25.

Protein aggregation as a paradigm of aging.

Lindner AB, Demarez A.

Biochim Biophys Acta. 2009 Oct;1790(10):980-96. doi: 10.1016/j.bbagen.2009.06.005. Epub 2009 Jun 13. Review.

PMID:
19527771
26.

Recombination and replication in DNA repair of heavily irradiated Deinococcus radiodurans.

Slade D, Lindner AB, Paul G, Radman M.

Cell. 2009 Mar 20;136(6):1044-55. doi: 10.1016/j.cell.2009.01.018.

27.

Direct visualization of horizontal gene transfer.

Babic A, Lindner AB, Vulic M, Stewart EJ, Radman M.

Science. 2008 Mar 14;319(5869):1533-6. doi: 10.1126/science.1153498.

28.

Asymmetric segregation of protein aggregates is associated with cellular aging and rejuvenation.

Lindner AB, Madden R, Demarez A, Stewart EJ, Taddei F.

Proc Natl Acad Sci U S A. 2008 Feb 26;105(8):3076-81. doi: 10.1073/pnas.0708931105. Epub 2008 Feb 19.

29.

Dissecting the genetic components of adaptation of Escherichia coli to the mouse gut.

Giraud A, Arous S, De Paepe M, Gaboriau-Routhiau V, Bambou JC, Rakotobe S, Lindner AB, Taddei F, Cerf-Bensussan N.

PLoS Genet. 2008 Jan;4(1):e2. doi: 10.1371/journal.pgen.0040002. Epub 2007 Nov 27.

30.

Mutations in two global regulators lower individual mortality in Escherichia coli.

Fontaine F, Stewart EJ, Lindner AB, Taddei F.

Mol Microbiol. 2008 Jan;67(1):2-14. Epub 2007 Nov 25.

31.

Microcontact printing of living bacteria arrays with cellular resolution.

Xu L, Robert L, Ouyang Q, Taddei F, Chen Y, Lindner AB, Baigl D.

Nano Lett. 2007 Jul;7(7):2068-72. Epub 2007 Jun 22. Review.

PMID:
17585831
32.

Construction of a multiple fluorescence labelling system for use in co-invasion studies of Listeria monocytogenes.

Andersen JB, Roldgaard BB, Lindner AB, Christensen BB, Licht TR.

BMC Microbiol. 2006 Oct 3;6:86.

33.

Reassembly of shattered chromosomes in Deinococcus radiodurans.

Zahradka K, Slade D, Bailone A, Sommer S, Averbeck D, Petranovic M, Lindner AB, Radman M.

Nature. 2006 Oct 5;443(7111):569-73. Epub 2006 Sep 27.

PMID:
17006450
34.

Quantitative detection of protein arrays.

Levit-Binnun N, Lindner AB, Zik O, Eshhar Z, Moses E.

Anal Chem. 2003 Mar 15;75(6):1436-41.

PMID:
12659207
35.

Esterolytic antibodies as mechanistic and structural models of hydrolases-a quantitative analysis.

Lindner AB, Kim SH, Schindler DG, Eshhar Z, Tawfik DS.

J Mol Biol. 2002 Jul 12;320(3):559-72.

PMID:
12096909
36.

Conformational changes affect binding and catalysis by ester-hydrolysing antibodies.

Lindner AB, Eshhar Z, Tawfik DS.

J Mol Biol. 1999 Jan 8;285(1):421-30.

PMID:
9878416
37.

Expression and characterization of recombinant single-chain Fv and Fv fragments derived from a set of catalytic antibodies.

Kim SH, Schindler DG, Lindner AB, Tawfik DS, Eshhar Z.

Mol Immunol. 1997 Aug-Sep;34(12-13):891-906.

PMID:
9464525
38.

Efficient and selective p-nitrophenyl-ester-hydrolyzing antibodies elicited by a p-nitrobenzyl phosphonate hapten.

Tawfik DS, Lindner AB, Chap R, Eshhar Z, Green BS.

Eur J Biochem. 1997 Mar 1;244(2):619-26.

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