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Items: 1 to 50 of 55

1.

Genomic Takeover by Transposable Elements in the Strawberry Poison Frog.

Rogers RL, Zhou L, Chu C, Márquez R, Corl A, Linderoth T, Freeborn L, MacManes MD, Xiong Z, Zheng J, Guo C, Xun X, Kronforst MR, Summers K, Wu Y, Yang H, Richards-Zawacki CL, Zhang G, Nielsen R.

Mol Biol Evol. 2018 Dec 1;35(12):2913-2927. doi: 10.1093/molbev/msy185.

2.

Three-dimensional hydrogen bonding between Landers and planar molecules facilitated by electrostatic interactions with Ni adatoms.

Yu M, Benjalal Y, Chen C, Kalashnyk N, Xu W, Barattin R, Nagarajan S, Lægsgaard E, Stensgaard I, Hliwa M, Gourdon A, Besenbacher F, Bouju X, Linderoth TR.

Chem Commun (Camb). 2018 Aug 7;54(64):8845-8848. doi: 10.1039/c8cc04247k.

PMID:
30039145
3.

Supramolecular systems at liquid-solid interfaces: general discussion.

Amabilino D, Bâldea I, Besenius P, Beton P, Blunt M, Buck M, Champness NR, Chi L, Clarke S, Costantini G, De Feyter S, Diaz Fernandez Y, Dwivedi D, Ernst KH, Flood A, Hirsch B, Jones R, Kühnle A, Lackinger M, Linderoth TR, Martsinovich N, Mount A, Nalbach M, Pradier CM, Rahman T, Raval R, Robinson N, Sacchi M, Schwaminger S, Tait SL, Woodruff P, Zuilhof H.

Faraday Discuss. 2017 Oct 26;204:271-295. doi: 10.1039/c7fd90074k. No abstract available.

PMID:
29034923
4.

Supramolecular effects in self-assembled monolayers: general discussion.

Amabilino D, Bâldea I, Batteas J, Besenius P, Beton P, Buck M, Chi L, Costantini G, Davies P, De Feyter S, Diaz Fernandez Y, Dwivedi D, Ernst KH, Flood A, Hirsch B, Humblot V, Jones R, Kühnle A, Lackinger M, Lin N, Linderoth TR, Pradier CM, Rahman T, Raval R, Robinson N, Sacchi M, Schwaminger S, Tait SL, Woodruff P, Zuilhof H.

Faraday Discuss. 2017 Oct 26;204:123-158. doi: 10.1039/c7fd90073b. No abstract available.

PMID:
29034919
5.

Probing properties of molecule-based interface systems: general discussion and Discussion of the Concluding Remarks.

Amabilino D, Bâldea I, Batteas J, Beton P, Bilbao N, Costantini G, Davidson J, De Feyter S, Diaz Fernandez Y, Ernst KH, Hirsch B, Jabbarzadeh A, Jones R, Kühnle A, Lackinger M, Li Z, Lin N, Linderoth TR, Martsinovich N, Nalbach M, Pradier CM, Rahman T, Raval R, Robinson N, Rosei F, Sacchi M, Samperi M, Sanz Matias A, Saywell A, Schwaminger S, Tait SL.

Faraday Discuss. 2017 Oct 26;204:503-530. doi: 10.1039/c7fd90077e. No abstract available.

PMID:
29034388
6.

Influence of CH···N Interaction in the Self-Assembly of an Oligo(isoquinolyne-ethynylyne) Molecule with Distinct Conformational States.

Nuermaimaiti A, Ning Y, Cramer JL, Svane KL, Hammer B, Gothelf KV, Linderoth TR.

Langmuir. 2017 Oct 17;33(41):10782-10791. doi: 10.1021/acs.langmuir.7b02207. Epub 2017 Oct 2.

PMID:
28968110
7.

Steering Surface Reaction at Specific Sites with Self-Assembly Strategy.

Zhou X, Bebensee F, Yang M, Bebensee R, Cheng F, He Y, Shen Q, Shang J, Liu Z, Besenbacher F, Linderoth TR, Wu K.

ACS Nano. 2017 Sep 26;11(9):9397-9404. doi: 10.1021/acsnano.7b04900. Epub 2017 Aug 17.

PMID:
28809530
8.

Genome-wide signatures of complex introgression and adaptive evolution in the big cats.

Figueiró HV, Li G, Trindade FJ, Assis J, Pais F, Fernandes G, Santos SHD, Hughes GM, Komissarov A, Antunes A, Trinca CS, Rodrigues MR, Linderoth T, Bi K, Silveira L, Azevedo FCC, Kantek D, Ramalho E, Brassaloti RA, Villela PMS, Nunes ALV, Teixeira RHF, Morato RG, Loska D, Saragüeta P, Gabaldón T, Teeling EC, O'Brien SJ, Nielsen R, Coutinho LL, Oliveira G, Murphy WJ, Eizirik E.

Sci Adv. 2017 Jul 19;3(7):e1700299. doi: 10.1126/sciadv.1700299. eCollection 2017 Jul.

9.

Supramolecular Corrals on Surfaces Resulting from Aromatic Interactions of Nonplanar Triazoles.

Jethwa SJ, Kolsbjerg EL, Vadapoo SR, Cramer JL, Lammich L, Gothelf KV, Hammer B, Linderoth TR.

ACS Nano. 2017 Aug 22;11(8):8302-8310. doi: 10.1021/acsnano.7b03484. Epub 2017 Aug 1.

PMID:
28762721
10.

Revealing the structural detail of individual polymers using a combination of electrospray deposition and UHV-STM.

Jethwa SJ, Madsen M, Knudsen JB, Lammich L, Gothelf KV, Linderoth TR.

Chem Commun (Camb). 2017 Jan 17;53(6):1168-1171. doi: 10.1039/c6cc09167a.

PMID:
28054080
11.

Selection of conformational states in surface self-assembly for a molecule with eight possible pairs of surface enantiomers.

Nuermaimaiti A, S-Falk V, Cramer JL, Svane KL, Hammer B, Gothelf KV, Linderoth TR.

Chem Commun (Camb). 2016 Nov 29;52(97):14023-14026.

PMID:
27853758
12.

Structure and role of metal clusters in a metal-organic coordination network determined by density functional theory.

Svane KL, Linderoth TR, Hammer B.

J Chem Phys. 2016 Feb 28;144(8):084708. doi: 10.1063/1.4942665.

PMID:
26931719
13.

Selection of conformational states in self-assembled surface structures formed from an oligo(naphthylene-ethynylene) 3-bit binary switch.

Ning Y, Cramer JR, Nuermaimaiti A, Svane K, Yu M, Lægsgaard E, Besenbacher F, Xue QK, Ma X, Hammer B, Gothelf KV, Linderoth TR.

J Chem Phys. 2015 Mar 14;142(10):101922. doi: 10.1063/1.4908062.

PMID:
25770511
14.

A surface coordination network based on copper adatom trimers.

Bebensee F, Svane K, Bombis C, Masini F, Klyatskaya S, Besenbacher F, Ruben M, Hammer B, Linderoth TR.

Angew Chem Int Ed Engl. 2014 Nov 17;53(47):12955-9. doi: 10.1002/anie.201406528. Epub 2014 Sep 22.

PMID:
25251167
15.

Bicomponent hydrogen-bonded nanostructures formed by two complementary molecular Landers on Au(111).

Kalashnyk N, Yu M, Barattin R, Benjalal Y, Hliwa M, Joachim C, Lægsgaard E, Besenbacher F, Gourdon A, Bouju X, Linderoth TR.

Chem Commun (Camb). 2014 Sep 21;50(73):10619-21. doi: 10.1039/c4cc03550j. Epub 2014 Jul 30.

PMID:
25073695
16.

Chiral induction with chiral conformational switches in the limit of low "sergeants to soldiers" ratio.

Nuermaimaiti A, Bombis C, Knudsen MM, Cramer JR, Lægsgaard E, Besenbacher F, Gothelf KV, Linderoth TR.

ACS Nano. 2014 Aug 26;8(8):8074-81. doi: 10.1021/nn502097h. Epub 2014 Jul 29.

PMID:
24960454
17.

ngsTools: methods for population genetics analyses from next-generation sequencing data.

Fumagalli M, Vieira FG, Linderoth T, Nielsen R.

Bioinformatics. 2014 May 15;30(10):1486-7. doi: 10.1093/bioinformatics/btu041. Epub 2014 Jan 23.

18.

Unlocking the vault: next-generation museum population genomics.

Bi K, Linderoth T, Vanderpool D, Good JM, Nielsen R, Moritz C.

Mol Ecol. 2013 Dec;22(24):6018-32. doi: 10.1111/mec.12516. Epub 2013 Oct 7.

19.

Adsorption and dehydrogenation of tetrahydroxybenzene on Cu(111).

Bebensee F, Svane K, Bombis C, Masini F, Klyatskaya S, Besenbacher F, Ruben M, Hammer B, Linderoth T.

Chem Commun (Camb). 2013 Oct 18;49(81):9308-10. doi: 10.1039/c3cc45052j.

PMID:
23999460
20.

Quantifying population genetic differentiation from next-generation sequencing data.

Fumagalli M, Vieira FG, Korneliussen TS, Linderoth T, Huerta-Sánchez E, Albrechtsen A, Nielsen R.

Genetics. 2013 Nov;195(3):979-92. doi: 10.1534/genetics.113.154740. Epub 2013 Aug 26.

21.

Adsorption of the organic salt TAB(HCl)4 on Cu(111) studied using STM and XPS.

Masini F, Ning Y, Li Z, Lægsgaard E, Besenbacher F, Linderoth TR.

Chem Commun (Camb). 2013 Oct 7;49(77):8665-7. doi: 10.1039/c3cc43851a.

PMID:
23949003
22.

On-surface azide-alkyne cycloaddition on Cu(111): does it "click" in ultrahigh vacuum?

Bebensee F, Bombis C, Vadapoo SR, Cramer JR, Besenbacher F, Gothelf KV, Linderoth TR.

J Am Chem Soc. 2013 Feb 13;135(6):2136-9. doi: 10.1021/ja312303a. Epub 2013 Feb 1.

PMID:
23360358
23.

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales.

Bi K, Vanderpool D, Singhal S, Linderoth T, Moritz C, Good JM.

BMC Genomics. 2012 Aug 17;13:403. doi: 10.1186/1471-2164-13-403.

24.

Scanning tunneling microscopy reveals single-molecule insights into the self-assembly of amyloid fibrils.

Kalashnyk N, Nielsen JT, Nielsen EH, Skrydstrup T, Otzen DE, Lægsgaard E, Wang C, Besenbacher F, Nielsen NC, Linderoth TR.

ACS Nano. 2012 Aug 28;6(8):6882-9. doi: 10.1021/nn301708d. Epub 2012 Jul 10.

PMID:
22779709
25.

Chiral induction by seeding surface assemblies of chiral switches.

Masini F, Kalashnyk N, Knudsen MM, Cramer JR, Laegsgaard E, Besenbacher F, Gothelf KV, Linderoth TR.

J Am Chem Soc. 2011 Sep 7;133(35):13910-3. doi: 10.1021/ja205998c. Epub 2011 Aug 15.

PMID:
21830788
26.

Homochiral xanthine quintet networks self-assembled on Au(111) surfaces.

Yu M, Wang J, Mura M, Meng QQ, Xu W, Gersen H, Lægsgaard E, Stensgaard I, Kelly RE, Kjems J, Linderoth TR, Kantorovich LN, Besenbacher F.

ACS Nano. 2011 Aug 23;5(8):6651-60. doi: 10.1021/nn202157m. Epub 2011 Jul 19.

PMID:
21749154
27.

Controlling chiral organization of molecular rods on Au(111) by molecular design.

Knudsen MM, Kalashnyk N, Masini F, Cramer JR, Lægsgaard E, Besenbacher F, Linderoth TR, Gothelf KV.

J Am Chem Soc. 2011 Apr 6;133(13):4896-905. doi: 10.1021/ja110052n. Epub 2011 Mar 14.

PMID:
21401127
28.

Global and local expression of chirality in serine on the Cu{110} surface.

Eralp T, Shavorskiy A, Zheleva ZV, Held G, Kalashnyk N, Ning Y, Linderoth TR.

Langmuir. 2010 Dec 21;26(24):18841-51. doi: 10.1021/la1036772. Epub 2010 Nov 24.

PMID:
21090821
29.

Supramolecular porous network formed by molecular recognition between chemically modified nucleobases guanine and cytosine.

Xu W, Wang JG, Jacobsen MF, Mura M, Yu M, Kelly RE, Meng QQ, Laegsgaard E, Stensgaard I, Linderoth TR, Kjems J, Kantorovich LN, Gothelf KV, Besenbacher F.

Angew Chem Int Ed Engl. 2010 Dec 3;49(49):9373-7. doi: 10.1002/anie.201003390. No abstract available.

PMID:
21064057
30.

Guanine- and potassium-based two-dimensional coordination network self-assembled on Au(111).

Xu W, Wang JG, Yu M, Laegsgaard E, Stensgaard I, Linderoth TR, Hammer B, Wang C, Besenbacher F.

J Am Chem Soc. 2010 Nov 17;132(45):15927-9. doi: 10.1021/ja1078909. Epub 2010 Oct 26.

PMID:
20977223
31.

Self-assembly of hydrogen-bonded chains of molecular landers.

Yu M, Kalashnyk N, Barattin R, Benjalal Y, Hliwa M, Bouju X, Gourdon A, Joachim C, Laegsgaard E, Besenbacher F, Linderoth TR.

Chem Commun (Camb). 2010 Aug 14;46(30):5545-7. doi: 10.1039/c0cc01130d. Epub 2010 Jun 24.

PMID:
20574592
32.

Supramolecular architectures on surfaces formed through hydrogen bonding optimized in three dimensions.

Yu M, Kalashnyk N, Xu W, Barattin R, Benjalal Y, Laegsgaard E, Stensgaard I, Hliwa M, Bouju X, Gourdon A, Joachim C, Besenbacher F, Linderoth TR.

ACS Nano. 2010 Jul 27;4(7):4097-109. doi: 10.1021/nn100450q.

PMID:
20550141
33.

Steering organizational and conformational surface chirality by controlling molecular chemical functionality.

Bombis C, Weigelt S, Knudsen MM, Nørgaard M, Busse C, Laegsgaard E, Besenbacher F, Gothelf KV, Linderoth TR.

ACS Nano. 2010 Jan 26;4(1):297-311. doi: 10.1021/nn9012803.

PMID:
20000754
34.

Hydrogen-bonded molecular networks of melamine and cyanuric acid on thin films of NaCl on Au(111).

Bombis C, Kalashnyk N, Xu W, Laegsgaard E, Besenbacher F, Linderoth TR.

Small. 2009 Oct;5(19):2177-82. doi: 10.1002/smll.200900301.

PMID:
19517481
35.

Molecular self-assembly from building blocks synthesized on a surface in ultrahigh vacuum: kinetic control and topo-chemical reactions.

Weigelt S, Bombis C, Busse C, Knudsen MM, Gothelf KV, Laegsgaard E, Besenbacher F, Linderoth TR.

ACS Nano. 2008 Apr;2(4):651-60. doi: 10.1021/nn7004365.

PMID:
19206595
36.

Influence of alkyl side chains on hydrogen-bonded molecular surface nanostructures.

Xu W, Dong M, Gersen H, Rauls E, Vázquez-Campos S, Crego-Calama M, Reinhoudt DN, Laegsgaard E, Stensgaard I, Linderoth TR, Besenbacher F.

Small. 2008 Oct;4(10):1620-3. doi: 10.1002/smll.200800377. No abstract available.

PMID:
18651628
37.

Surface synthesis of 2D branched polymer nanostructures.

Weigelt S, Busse C, Bombis C, Knudsen MM, Gothelf KV, Laegsgaard E, Besenbacher F, Linderoth TR.

Angew Chem Int Ed Engl. 2008;47(23):4406-10. doi: 10.1002/anie.200705079. No abstract available.

PMID:
18442149
38.

Formation of trioctylamine from octylamine on Au(111).

Weigelt S, Schnadt J, Tuxen AK, Masini F, Bombis C, Busse C, Isvoranu C, Ataman E, Laegsgaard E, Besenbacher F, Linderoth TR.

J Am Chem Soc. 2008 Apr 23;130(16):5388-9. doi: 10.1021/ja710227g. Epub 2008 Apr 2.

PMID:
18380433
39.

Covalent interlinking of an aldehyde and an amine on a Au(111) surface in ultrahigh vacuum.

Weigelt S, Busse C, Bombis C, Knudsen MM, Gothelf KV, Strunskus T, Wöll C, Dahlbom M, Hammer B, Laegsgaard E, Besenbacher F, Linderoth TR.

Angew Chem Int Ed Engl. 2007;46(48):9227-30. No abstract available.

PMID:
17968866
40.

Influence of molecular geometry on the adsorption orientation for oligophenylene-ethynylenes on Au(111).

Weigelt S, Busse C, Nielsen M, Gothelf KV, Laegsgaard E, Besenbacher F, Linderoth TR.

J Phys Chem B. 2007 Oct 4;111(39):11342-5. Epub 2007 Sep 13.

PMID:
17850138
41.

Self-organization of gold-containing hydrogen-bonded rosette assemblies on graphite surface.

Vázquez-Campos S, Péter M, Dong M, Xu S, Xu W, Gersen H, Linderoth TR, Schönherr H, Besenbacher F, Crego-Calama M, Reinhoudt DN.

Langmuir. 2007 Sep 25;23(20):10294-8. Epub 2007 Aug 28.

PMID:
17722940
42.

Enhanced stability of large molecules vacuum-sublimated onto Au(111) achieved by incorporation of coordinated Au-atoms.

Xu W, Dong M, Vázquez-Campos S, Gersen H, Laegsgaard E, Stensgaard I, Crego-Calama M, Reinhoudt DN, Linderoth TR, Besenbacher F.

J Am Chem Soc. 2007 Sep 5;129(35):10624-5. Epub 2007 Aug 10. No abstract available.

PMID:
17691733
43.

Chiral ordering and conformational dynamics for a class of oligo-phenylene-ethynylenes on Au(111).

Busse C, Weigelt S, Petersen L, Laegsgaard E, Besenbacher F, Linderoth TR, Thomsen AH, Nielsen M, Gothelf KV.

J Phys Chem B. 2007 May 31;111(21):5850-60. Epub 2007 May 9.

PMID:
17488115
44.

Cyanuric acid and melamine on Au111: structure and energetics of hydrogen-bonded networks.

Xu W, Dong M, Gersen H, Rauls E, Vázquez-Campos S, Crego-Calama M, Reinhoudt DN, Stensgaard I, Laegsgaard E, Linderoth TR, Besenbacher F.

Small. 2007 May;3(5):854-8. No abstract available.

PMID:
17393548
45.

Coadsorption of guanine and cytosine on graphite: ordered structure based on GC pairing.

Xu S, Dong M, Rauls E, Otero R, Linderoth TR, Besenbacher F.

Nano Lett. 2006 Jul;6(7):1434-8.

PMID:
16834424
46.

Azobenzene on Cu(110): adsorption site-dependent diffusion.

Miwa JA, Weigelt S, Gersen H, Besenbacher F, Rosei F, Linderoth TR.

J Am Chem Soc. 2006 Mar 15;128(10):3164-5.

PMID:
16522095
47.

L-cysteine adsorption structures on Au(111) investigated by scanning tunneling microscopy under ultrahigh vacuum conditions.

Kühnle A, Linderoth TR, Schunack M, Besenbacher F.

Langmuir. 2006 Feb 28;22(5):2156-60.

PMID:
16489802
48.

Enantiospecific adsorption of cysteine at chiral kink sites on Au(110)-(1 x 2).

Kühnle A, Linderoth TR, Besenbacher F.

J Am Chem Soc. 2006 Feb 1;128(4):1076-7.

PMID:
16433514
49.

Chiral switching by spontaneous conformational change in adsorbed organic molecules.

Weigelt S, Busse C, Petersen L, Rauls E, Hammer B, Gothelf KV, Besenbacher F, Linderoth TR.

Nat Mater. 2006 Feb;5(2):112-7. Epub 2006 Jan 15.

PMID:
16415876
50.

Growth of unidirectional molecular rows of cysteine on Au(110)-(1 x 2) driven by adsorbate-induced surface rearrangements.

Kühnle A, Molina LM, Linderoth TR, Hammer B, Besenbacher F.

Phys Rev Lett. 2004 Aug 20;93(8):086101. Epub 2004 Aug 16.

PMID:
15447200

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