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Items: 1 to 50 of 140

1.

eBDIMS server: protein transition pathways with ensemble analysis in 2D-motion spaces.

Orellana L, Gustavsson J, Bergh C, Yoluk O, Lindahl E.

Bioinformatics. 2019 Feb 19. pii: btz104. doi: 10.1093/bioinformatics/btz104. [Epub ahead of print]

PMID:
30838394
2.

Inhibition of Nuclear PTEN Tyrosine Phosphorylation Enhances Glioma Radiation Sensitivity through Attenuated DNA Repair.

Ma J, Benitez JA, Li J, Miki S, Ponte de Albuquerque C, Galatro T, Orellana L, Zanca C, Reed R, Boyer A, Koga T, Varki NM, Fenton TR, Nagahashi Marie SK, Lindahl E, Gahman TC, Shiau AK, Zhou H, DeGroot J, Sulman EP, Cavenee WK, Kolodner RD, Chen CC, Furnari FB.

Cancer Cell. 2019 Mar 18;35(3):504-518.e7. doi: 10.1016/j.ccell.2019.01.020. Epub 2019 Feb 28.

PMID:
30827889
3.

Regulating gabapentin as a drug of abuse: A survey study of Kentucky community pharmacists.

Blackmer J, Lindahl E, Strahl A, Schadler A, Freeman PR.

J Am Pharm Assoc (2003). 2019 Feb 18. pii: S1544-3191(18)30585-5. doi: 10.1016/j.japh.2018.12.018. [Epub ahead of print]

PMID:
30786971
4.

Structure of the DP1-DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases.

Raia P, Carroni M, Henry E, Pehau-Arnaudet G, Brûlé S, Béguin P, Henneke G, Lindahl E, Delarue M, Sauguet L.

PLoS Biol. 2019 Jan 18;17(1):e3000122. doi: 10.1371/journal.pbio.3000122. eCollection 2019 Jan.

5.

Ten simple rules on how to create open access and reproducible molecular simulations of biological systems.

Elofsson A, Hess B, Lindahl E, Onufriev A, van der Spoel D, Wallqvist A.

PLoS Comput Biol. 2019 Jan 17;15(1):e1006649. doi: 10.1371/journal.pcbi.1006649. eCollection 2019 Jan. No abstract available.

6.

New tools for automated high-resolution cryo-EM structure determination in RELION-3.

Zivanov J, Nakane T, Forsberg BO, Kimanius D, Hagen WJ, Lindahl E, Scheres SH.

Elife. 2018 Nov 9;7. pii: e42166. doi: 10.7554/eLife.42166.

7.

Using Scipion for stream image processing at Cryo-EM facilities.

Gómez-Blanco J, de la Rosa-Trevín JM, Marabini R, Del Cano L, Jiménez A, Martínez M, Melero R, Majtner T, Maluenda D, Mota J, Rancel Y, Ramírez-Aportela E, Vilas JL, Carroni M, Fleischmann S, Lindahl E, Ashton AW, Basham M, Clare DK, Savage K, Siebert CA, Sharov GG, Sorzano COS, Conesa P, Carazo JM.

J Struct Biol. 2018 Dec;204(3):457-463. doi: 10.1016/j.jsb.2018.10.001. Epub 2018 Oct 5.

8.

Allosteric potentiation of a ligand-gated ion channel is mediated by access to a deep membrane-facing cavity.

Heusser SA, Lycksell M, Wang X, McComas SE, Howard RJ, Lindahl E.

Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):10672-10677. doi: 10.1073/pnas.1809650115. Epub 2018 Oct 1.

9.

Uptake dynamics in the Lactose permease (LacY) membrane protein transporter.

Kimanius D, Lindahl E, Andersson M.

Sci Rep. 2018 Sep 25;8(1):14324. doi: 10.1038/s41598-018-32624-7.

10.

Determining the molecular basis of voltage sensitivity in membrane proteins.

Kasimova MA, Lindahl E, Delemotte L.

J Gen Physiol. 2018 Oct 1;150(10):1444-1458. doi: 10.1085/jgp.201812086. Epub 2018 Aug 27.

PMID:
30150239
11.

Publisher Correction: Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor.

Perez Boerema A, Aibara S, Paul B, Tobiasson V, Kimanius D, Forsberg BO, Wallden K, Lindahl E, Amunts A.

Nat Plants. 2018 Aug;4(8):615. doi: 10.1038/s41477-018-0203-0.

PMID:
30038411
12.

PAN-AMPK activator O304 improves glucose homeostasis and microvascular perfusion in mice and type 2 diabetes patients.

Steneberg P, Lindahl E, Dahl U, Lidh E, Straseviciene J, Backlund F, Kjellkvist E, Berggren E, Lundberg I, Bergqvist I, Ericsson M, Eriksson B, Linde K, Westman J, Edlund T, Edlund H.

JCI Insight. 2018 Jun 21;3(12). pii: 99114. doi: 10.1172/jci.insight.99114. eCollection 2018 Jun 21.

13.

Predicting drug permeability through skin using molecular dynamics simulation.

Lundborg M, Wennberg CL, Narangifard A, Lindahl E, Norlén L.

J Control Release. 2018 Aug 10;283:269-279. doi: 10.1016/j.jconrel.2018.05.026. Epub 2018 Jun 1.

14.

Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION.

Nakane T, Kimanius D, Lindahl E, Scheres SH.

Elife. 2018 Jun 1;7. pii: e36861. doi: 10.7554/eLife.36861.

15.

Human skin barrier structure and function analyzed by cryo-EM and molecular dynamics simulation.

Lundborg M, Narangifard A, Wennberg CL, Lindahl E, Daneholt B, Norlén L.

J Struct Biol. 2018 Aug;203(2):149-161. doi: 10.1016/j.jsb.2018.04.005. Epub 2018 Apr 24.

16.

Structural Basis for a Bimodal Allosteric Mechanism of General Anesthetic Modulation in Pentameric Ligand-Gated Ion Channels.

Fourati Z, Howard RJ, Heusser SA, Hu H, Ruza RR, Sauguet L, Lindahl E, Delarue M.

Cell Rep. 2018 Apr 24;23(4):993-1004. doi: 10.1016/j.celrep.2018.03.108.

17.

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor.

Perez Boerema A, Aibara S, Paul B, Tobiasson V, Kimanius D, Forsberg BO, Wallden K, Lindahl E, Amunts A.

Nat Plants. 2018 Apr;4(4):212-217. doi: 10.1038/s41477-018-0129-6. Epub 2018 Apr 2. Erratum in: Nat Plants. 2018 Aug;4(8):615.

PMID:
29610536
18.

Human skin barrier formation takes place via a cubic to lamellar lipid phase transition as analyzed by cryo-electron microscopy and EM-simulation.

Narangifard A, den Hollander L, Wennberg CL, Lundborg M, Lindahl E, Iwai I, Han H, Masich S, Daneholt B, Norlén L.

Exp Cell Res. 2018 May 15;366(2):139-151. doi: 10.1016/j.yexcr.2018.03.010. Epub 2018 Mar 19.

19.

Structural Transitions in Ceramide Cubic Phases during Formation of the Human Skin Barrier.

Wennberg CL, Narangifard A, Lundborg M, Norlén L, Lindahl E.

Biophys J. 2018 Mar 13;114(5):1116-1127. doi: 10.1016/j.bpj.2017.12.039.

20.

Cryo-EM reconstruction of the chlororibosome to 3.2 Å resolution within 24 h.

Forsberg BO, Aibara S, Kimanius D, Paul B, Lindahl E, Amunts A.

IUCrJ. 2017 Sep 22;4(Pt 6):723-727. doi: 10.1107/S205225251701226X. eCollection 2017 Nov 1.

21.

Illness-related absence among preschool children: Insights from a health intervention in Swedish preschools.

Hall C, Lindahl E.

J Health Econ. 2017 Dec;56:191-200. doi: 10.1016/j.jhealeco.2017.10.004. Epub 2017 Oct 18.

PMID:
29111499
22.

A drug pocket at the lipid bilayer-potassium channel interface.

Ottosson NE, Silverå Ejneby M, Wu X, Yazdi S, Konradsson P, Lindahl E, Elinder F.

Sci Adv. 2017 Oct 25;3(10):e1701099. doi: 10.1126/sciadv.1701099. eCollection 2017 Oct.

23.

Erratum: Reduced Limit on the Permanent Electric Dipole Moment of ^{199}Hg [Phys. Rev. Lett. 116, 161601 (2016)].

Graner B, Chen Y, Lindahl EG, Heckel BR.

Phys Rev Lett. 2017 Sep 15;119(11):119901. doi: 10.1103/PhysRevLett.119.119901. Epub 2017 Sep 12.

PMID:
28949237
24.

Preoperative Cognitive Performance and Postoperative Delirium Are Independently Associated With Future Dementia in Older People Who Have Undergone Cardiac Surgery: A Longitudinal Cohort Study.

Lingehall HC, Smulter NS, Lindahl E, Lindkvist M, Engström KG, Gustafson YG, Olofsson B.

Crit Care Med. 2017 Aug;45(8):1295-1303. doi: 10.1097/CCM.0000000000002483.

25.

Proinsulin C-peptide regulates ribosomal RNA expression.

Lindahl E, Nyman U, Zaman F, Palmberg C, Cascante A, Shafqat J, Takigawa M, Sävendahl L, Jörnvall H, Joseph B.

J Biol Chem. 2017 Mar 10;292(10):4382. doi: 10.1074/jbc.A109.053587. No abstract available.

26.

Membrane Anchoring and Ion-Entry Dynamics in P-type ATPase Copper Transport.

Grønberg C, Sitsel O, Lindahl E, Gourdon P, Andersson M.

Biophys J. 2016 Dec 6;111(11):2417-2429. doi: 10.1016/j.bpj.2016.10.020.

27.

Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2.

Kimanius D, Forsberg BO, Scheres SH, Lindahl E.

Elife. 2016 Nov 15;5. pii: e18722. doi: 10.7554/eLife.18722.

28.

Allosteric binding site in a Cys-loop receptor ligand-binding domain unveiled in the crystal structure of ELIC in complex with chlorpromazine.

Nys M, Wijckmans E, Farinha A, Yoluk Ö, Andersson M, Brams M, Spurny R, Peigneur S, Tytgat J, Lindahl E, Ulens C.

Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):E6696-E6703. Epub 2016 Oct 10.

29.

Energetics of side-chain snorkeling in transmembrane helices probed by nonproteinogenic amino acids.

Öjemalm K, Higuchi T, Lara P, Lindahl E, Suga H, von Heijne G.

Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):10559-64. doi: 10.1073/pnas.1606776113. Epub 2016 Sep 6.

30.

Prediction and validation of protein intermediate states from structurally rich ensembles and coarse-grained simulations.

Orellana L, Yoluk O, Carrillo O, Orozco M, Lindahl E.

Nat Commun. 2016 Aug 31;7:12575. doi: 10.1038/ncomms12575.

31.

Yoga reduces perceived stress and exhaustion levels in healthy elderly individuals.

Lindahl E, Tilton K, Eickholt N, Ferguson-Stegall L.

Complement Ther Clin Pract. 2016 Aug;24:50-6. doi: 10.1016/j.ctcp.2016.05.007. Epub 2016 May 7.

PMID:
27502801
32.

Reciprocal voltage sensor-to-pore coupling leads to potassium channel C-type inactivation.

Conti L, Renhorn J, Gabrielsson A, Turesson F, Liin SI, Lindahl E, Elinder F.

Sci Rep. 2016 Jun 9;6:27562. doi: 10.1038/srep27562.

33.

Reduced Limit on the Permanent Electric Dipole Moment of ^{199}Hg.

Graner B, Chen Y, Lindahl EG, Heckel BR.

Phys Rev Lett. 2016 Apr 22;116(16):161601. doi: 10.1103/PhysRevLett.116.161601. Epub 2016 Apr 18. Erratum in: Phys Rev Lett. 2017 Sep 15;119(11):119901.

PMID:
27152789
34.

Functional characterization of neurotransmitter activation and modulation in a nematode model ligand-gated ion channel.

Heusser SA, Yoluk Ö, Klement G, Riederer EA, Lindahl E, Howard RJ.

J Neurochem. 2016 Jul;138(2):243-53. doi: 10.1111/jnc.13644. Epub 2016 May 25.

35.

The Molecular Basis of Polyunsaturated Fatty Acid Interactions with the Shaker Voltage-Gated Potassium Channel.

Yazdi S, Stein M, Elinder F, Andersson M, Lindahl E.

PLoS Comput Biol. 2016 Jan 11;12(1):e1004704. doi: 10.1371/journal.pcbi.1004704. eCollection 2016 Jan.

36.

Direct-Space Corrections Enable Fast and Accurate Lorentz-Berthelot Combination Rule Lennard-Jones Lattice Summation.

Wennberg CL, Murtola T, Páll S, Abraham MJ, Hess B, Lindahl E.

J Chem Theory Comput. 2015 Dec 8;11(12):5737-46. doi: 10.1021/acs.jctc.5b00726. Epub 2015 Nov 20.

PMID:
26587968
37.

SAXS-Guided Metadynamics.

Kimanius D, Pettersson I, Schluckebier G, Lindahl E, Andersson M.

J Chem Theory Comput. 2015 Jul 14;11(7):3491-8. doi: 10.1021/acs.jctc.5b00299.

PMID:
26575782
38.

Molecular simulation workflows as parallel algorithms: the execution engine of Copernicus, a distributed high-performance computing platform.

Pronk S, Pouya I, Lundborg M, Rotskoff G, Wesén B, Kasson PM, Lindahl E.

J Chem Theory Comput. 2015 Jun 9;11(6):2600-8. doi: 10.1021/acs.jctc.5b00234.

PMID:
26575558
39.

Conformational gating dynamics in the GluCl anion-selective chloride channel.

Yoluk Ö, Lindahl E, Andersson M.

ACS Chem Neurosci. 2015 Aug 19;6(8):1459-67. doi: 10.1021/acschemneuro.5b00111. Epub 2015 Jun 2.

PMID:
25992588
40.

Experiences of undergoing cardiac surgery among older people diagnosed with postoperative delirium: one year follow-up.

Claesson Lingehall H, Smulter N, Olofsson B, Lindahl E.

BMC Nurs. 2015 Mar 30;14:17. doi: 10.1186/s12912-015-0069-7. eCollection 2015.

41.

Prevalence of and factors associated with Brucella sero-positivity in cattle in urban and peri-urban Gulu and Soroti towns of Uganda.

Mugizi DR, Boqvist S, Nasinyama GW, Waiswa C, Ikwap K, Rock K, Lindahl E, Magnusson U, Erume J.

J Vet Med Sci. 2015 May;77(5):557-64. doi: 10.1292/jvms.14-0452. Epub 2015 Feb 14.

42.

A study of knowledge, attitudes and practices relating to brucellosis among small-scale dairy farmers in an urban and peri-urban area of Tajikistan.

Lindahl E, Sattorov N, Boqvist S, Magnusson U.

PLoS One. 2015 Feb 10;10(2):e0117318. doi: 10.1371/journal.pone.0117318. eCollection 2015.

43.

Coupled diffusion in lipid bilayers upon close approach.

Pronk S, Lindahl E, Kasson PM.

J Am Chem Soc. 2015 Jan 21;137(2):708-14. doi: 10.1021/ja508803d. Epub 2015 Jan 6.

44.

Automatic GROMACS topology generation and comparisons of force fields for solvation free energy calculations.

Lundborg M, Lindahl E.

J Phys Chem B. 2015 Jan 22;119(3):810-23. doi: 10.1021/jp505332p. Epub 2014 Nov 7.

PMID:
25343332
45.

Molecular dynamics simulations.

Lindahl E.

Methods Mol Biol. 2015;1215:3-26. doi: 10.1007/978-1-4939-1465-4_1.

PMID:
25330956
46.

Seropositivity and risk factors for Brucella in dairy cows in urban and peri-urban small-scale farming in Tajikistan.

Lindahl E, Sattorov N, Boqvist S, Sattori I, Magnusson U.

Trop Anim Health Prod. 2014 Mar;46(3):563-9. doi: 10.1007/s11250-013-0534-9. Epub 2014 Jan 12.

47.

Dynamic heterogeneity controls diffusion and viscosity near biological interfaces.

Pronk S, Lindahl E, Kasson PM.

Nat Commun. 2014;5:3034. doi: 10.1038/ncomms4034.

48.

An efficient and extensible format, library, and API for binary trajectory data from molecular simulations.

Lundborg M, Apostolov R, Spångberg D, Gärdenäs A, van der Spoel D, Lindahl E.

J Comput Chem. 2014 Jan 30;35(3):260-9. doi: 10.1002/jcc.23495. Epub 2013 Nov 20.

PMID:
24258850
49.

Structural models of ligand-gated ion channels: sites of action for anesthetics and ethanol.

Olsen RW, Li GD, Wallner M, Trudell JR, Bertaccini EJ, Lindahl E, Miller KW, Alkana RL, Davies DL.

Alcohol Clin Exp Res. 2014 Mar;38(3):595-603. doi: 10.1111/acer.12283. Epub 2013 Oct 24. Review.

50.

First-time decisions regarding work injury annuity due to occupational disease: a gender perspective.

Leijon O, Lindahl E, Torén K, Vingård E, Josephson M.

Occup Environ Med. 2014 Feb;71(2):147-53. doi: 10.1136/oemed-2013-101489. Epub 2013 Oct 18.

PMID:
24142986

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