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Items: 1 to 50 of 118

1.

A platform for extracellular interactome discovery identifies novel functional binding partners for the immune receptors B7-H3/CD276 and PVR/CD155.

Husain B, Ramani SR, Chiang E, Lehoux I, Paduchuri S, Arena TA, Patel A, Wilson B, Chan P, Franke Y, Wong AW, Lill JR, Turley SJ, Gonzalez LC, Grogan JL, Martinez-Martin N.

Mol Cell Proteomics. 2019 Jul 15. pii: mcp.TIR119.001433. doi: 10.1074/mcp.TIR119.001433. [Epub ahead of print]

2.

Hippo Pathway in Cancer: Aberrant Regulation and Therapeutic Opportunities.

Calses PC, Crawford JJ, Lill JR, Dey A.

Trends Cancer. 2019 May;5(5):297-307. doi: 10.1016/j.trecan.2019.04.001. Epub 2019 May 16. Review.

PMID:
31174842
3.

Discovery and Qualification of Candidate Urinary Biomarkers of Disease Activity in Lupus Nephritis.

Anania VG, Yu K, Pingitore F, Li Q, Rose CM, Liu P, Sandoval W, Herman AE, Lill JR, Mathews WR.

J Proteome Res. 2019 Mar 1;18(3):1264-1277. doi: 10.1021/acs.jproteome.8b00874. Epub 2019 Jan 3.

PMID:
30525646
4.

MAPPs for the identification of immunogenic hotspots of biotherapeutics; an overview of the technology and its application to the biopharmaceutical arena.

Quarmby V, Phung QT, Lill JR.

Expert Rev Proteomics. 2018 Sep;15(9):733-748. doi: 10.1080/14789450.2018.1521279. Epub 2018 Sep 17. Review.

PMID:
30198337
5.

The tumor suppressor BAP1 cooperates with BRAFV600E to promote tumor formation in cutaneous melanoma.

Webster JD, Pham TH, Wu X, Hughes NW, Li Z, Totpal K, Lee HJ, Calses PC, Chaurushiya MS, Stawiski EW, Modrusan Z, Chang MT, Tran C, Lee WP, Chalasani S, Hung J, Sharma N, Chan S, Hotzel K, Talevich E, Shain A, Xu M, Lill J, Dixit VM, Bastian BC, Dey A.

Pigment Cell Melanoma Res. 2019 Mar;32(2):269-279. doi: 10.1111/pcmr.12735. Epub 2018 Sep 24.

PMID:
30156010
6.

Microwave-Assisted Protein Staining, Destaining, and In-Gel/In-Solution Digestion of Proteins.

Lill JR, Nesatyy VJ.

Methods Mol Biol. 2018;1853:75-86. doi: 10.1007/978-1-4939-8745-0_10.

PMID:
30097932
7.

Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE).

Lill JR, van Veelen PA, Tenzer S, Admon A, Caron E, Elias JE, Heck AJR, Marcilla M, Marino F, Müller M, Peters B, Purcell A, Sette A, Sturm T, Ternette N, Vizcaíno JA, Bassani-Sternberg M.

Proteomics. 2018 Jun;18(12):e1800110. doi: 10.1002/pmic.201800110.

8.

MHC class I presented antigens from malignancies: A perspective on analytical characterization & immunogenicity.

Schmidt M, Lill JR.

J Proteomics. 2019 Jan 16;191:48-57. doi: 10.1016/j.jprot.2018.04.021. Epub 2018 Apr 24.

PMID:
29698800
9.

Tumor suppressor BAP1 is essential for thymic development and proliferative responses of T lymphocytes.

Arenzana TL, Lianoglou S, Seki A, Eidenschenk C, Cheung T, Seshasayee D, Hagenbeek T, Sambandam A, Noubade R, Peng I, Lesch J, DeVoss J, Wu X, Lee WP, Caplazi P, Webster J, Liu J, Pham VC, Arnott D, Lill JR, Modrusan Z, Dey A, Rutz S.

Sci Immunol. 2018 Apr 20;3(22). pii: eaal1953. doi: 10.1126/sciimmunol.aal1953.

PMID:
29678836
10.

Latitudinal variation in responses of a forest herbivore and its egg parasitoids to experimental warming.

Abarca M, Lill JT, Frank-Bolton P.

Oecologia. 2018 Mar;186(3):869-881. doi: 10.1007/s00442-017-4052-8. Epub 2017 Dec 28.

PMID:
29285561
11.

Spatial modeling of sediment transfer and identification of sediment sources during snowmelt in an agricultural watershed in boreal climate.

Gonzales-Inca C, Valkama P, Lill JO, Slotte J, Hietaharju E, Uusitalo R.

Sci Total Environ. 2018 Jan 15;612:303-312. doi: 10.1016/j.scitotenv.2017.08.142. Epub 2017 Sep 1.

PMID:
28850850
12.

An evaluation of social work services in a cancer accommodation facility for rural South Australians.

Wiggins B, Corsini N, Ramsey I, Edwards S, Ball D, Cocks L, Lill J, Sharplin G, Wilson C.

Support Care Cancer. 2018 Jan;26(1):147-154. doi: 10.1007/s00520-017-3828-z. Epub 2017 Jul 31.

PMID:
28762008
13.

The kinase TPL2 activates ERK and p38 signaling to promote neutrophilic inflammation.

Senger K, Pham VC, Varfolomeev E, Hackney JA, Corzo CA, Collier J, Lau VWC, Huang Z, Hamidzhadeh K, Caplazi P, Peng I, Setiadi AF, Francis R, Paler-Martinez A, Kwon YC, Ramirez-Carrozzi V, Sun Y, Grigg PW, Roose-Girma M, Jeet S, Barck KH, Pham A, Ota N, Ha C, Stinson J, Guillory J, Tam L, Modrusan Z, Emson C, McKenzie BS, Townsend MJ, Carano RAD, Warming S, Vucic D, DeVoss J, Lee WP, Lill JR, Zarrin AA.

Sci Signal. 2017 Apr 18;10(475). pii: eaah4273. doi: 10.1126/scisignal.aah4273.

PMID:
28420753
14.

Characterization of Chain Pairing Variants of Bispecific IgG Expressed in a Single Host Cell by High-Resolution Native and Denaturing Mass Spectrometry.

Schachner L, Han G, Dillon M, Zhou J, McCarty L, Ellerman D, Yin Y, Spiess C, Lill JR, Carter PJ, Sandoval W.

Anal Chem. 2016 Dec 20;88(24):12122-12127. doi: 10.1021/acs.analchem.6b02866. Epub 2016 Dec 8.

PMID:
28193052
15.

A Common Variant of IL-6R is Associated with Elevated IL-6 Pathway Activity in Alzheimer's Disease Brains.

Haddick PC, Larson JL, Rathore N, Bhangale TR, Phung QT, Srinivasan K, Hansen DV, Lill JR; Alzheimer’s Disease Genetic Consortium (ADGC), Alzheimer’s Disease Neuroimaging Initiative (ADNI), Pericak-Vance MA, Haines J, Farrer LA, Kauwe JS, Schellenberg GD, Cruchaga C, Goate AM, Behrens TW, Watts RJ, Graham RR, Kaminker JS, van der Brug M.

J Alzheimers Dis. 2017;56(3):1037-1054. doi: 10.3233/JAD-160524.

16.

Building proteomic tool boxes to monitor MHC class I and class II peptides.

Schumacher FR, Delamarre L, Jhunjhunwala S, Modrusan Z, Phung QT, Elias JE, Lill JR.

Proteomics. 2017 Jan;17(1-2). doi: 10.1002/pmic.201600061. Review.

PMID:
27928884
17.

RIPK1 inhibits ZBP1-driven necroptosis during development.

Newton K, Wickliffe KE, Maltzman A, Dugger DL, Strasser A, Pham VC, Lill JR, Roose-Girma M, Warming S, Solon M, Ngu H, Webster JD, Dixit VM.

Nature. 2016 Dec 1;540(7631):129-133. doi: 10.1038/nature20559. Epub 2016 Nov 7.

PMID:
27819682
18.

De Novo MS/MS Sequencing of Native Human Antibodies.

Guthals A, Gan Y, Murray L, Chen Y, Stinson J, Nakamura G, Lill JR, Sandoval W, Bandeira N.

J Proteome Res. 2017 Jan 6;16(1):45-54. doi: 10.1021/acs.jproteome.6b00608. Epub 2016 Nov 2.

19.

Response to Comment on "SUMO deconjugation is required for arsenic-triggered ubiquitylation of PML".

Fasci D, Anania V, Lill J, Salvesen G.

Sci Signal. 2016 Aug 9;9(440):tc2. doi: 10.1126/scisignal.aad9777.

PMID:
27507652
20.

Rapid, semi-automated protein terminal characterization using ISDetect.

Bakalarski CE, Gan Y, Wertz I, Lill JR, Sandoval W.

Nat Biotechnol. 2016 Aug 9;34(8):811-3. doi: 10.1038/nbt.3621. No abstract available.

PMID:
27504771
21.

Uncovering a Dual Regulatory Role for Caspases During Endoplasmic Reticulum Stress-induced Cell Death.

Anania VG, Yu K, Gnad F, Pferdehirt RR, Li H, Ma TP, Jeon D, Fortelny N, Forrest W, Ashkenazi A, Overall CM, Lill JR.

Mol Cell Proteomics. 2016 Jul;15(7):2293-307. doi: 10.1074/mcp.M115.055376. Epub 2016 Apr 28.

22.
23.

Caspase-11 cleaves gasdermin D for non-canonical inflammasome signalling.

Kayagaki N, Stowe IB, Lee BL, O'Rourke K, Anderson K, Warming S, Cuellar T, Haley B, Roose-Girma M, Phung QT, Liu PS, Lill JR, Li H, Wu J, Kummerfeld S, Zhang J, Lee WP, Snipas SJ, Salvesen GS, Morris LX, Fitzgerald L, Zhang Y, Bertram EM, Goodnow CC, Dixit VM.

Nature. 2015 Oct 29;526(7575):666-71. doi: 10.1038/nature15541. Epub 2015 Sep 16.

PMID:
26375259
24.

Warming affects hatching time and early season survival of eastern tent caterpillars.

Abarca M, Lill JT.

Oecologia. 2015 Nov;179(3):901-12. doi: 10.1007/s00442-015-3371-x. Epub 2015 Jun 21.

PMID:
26093630
25.

Transcription Factor ATF4 Induces NLRP1 Inflammasome Expression during Endoplasmic Reticulum Stress.

D'Osualdo A, Anania VG, Yu K, Lill JR, Kaufman RJ, Matsuzawa S, Reed JC.

PLoS One. 2015 Jun 18;10(6):e0130635. doi: 10.1371/journal.pone.0130635. eCollection 2015.

26.

IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis.

Safonova Y, Bonissone S, Kurpilyansky E, Starostina E, Lapidus A, Stinson J, DePalatis L, Sandoval W, Lill J, Pevzner PA.

Bioinformatics. 2015 Jun 15;31(12):i53-61. doi: 10.1093/bioinformatics/btv238.

27.

SUMO deconjugation is required for arsenic-triggered ubiquitylation of PML.

Fasci D, Anania VG, Lill JR, Salvesen GS.

Sci Signal. 2015 Jun 9;8(380):ra56. doi: 10.1126/scisignal.aaa3929.

28.

IgSimulator: a versatile immunosequencing simulator.

Safonova Y, Lapidus A, Lill J.

Bioinformatics. 2015 Oct 1;31(19):3213-5. doi: 10.1093/bioinformatics/btv326. Epub 2015 May 25.

PMID:
26007226
29.

Proteomic tools for the characterization of cell death mechanisms in drug discovery.

Anania VG, Lill JR.

Proteomics Clin Appl. 2015 Aug;9(7-8):671-83. doi: 10.1002/prca.201400151. Epub 2015 May 3. Review.

PMID:
25708855
30.

HSP105 recruits protein phosphatase 2A to dephosphorylate β-catenin.

Yu N, Kakunda M, Pham V, Lill JR, Du P, Wongchenko M, Yan Y, Firestein R, Huang X.

Mol Cell Biol. 2015 Apr;35(8):1390-400. doi: 10.1128/MCB.01307-14. Epub 2015 Feb 2.

31.

The global distribution of diet breadth in insect herbivores.

Forister ML, Novotny V, Panorska AK, Baje L, Basset Y, Butterill PT, Cizek L, Coley PD, Dem F, Diniz IR, Drozd P, Fox M, Glassmire AE, Hazen R, Hrcek J, Jahner JP, Kaman O, Kozubowski TJ, Kursar TA, Lewis OT, Lill J, Marquis RJ, Miller SE, Morais HC, Murakami M, Nickel H, Pardikes NA, Ricklefs RE, Singer MS, Smilanich AM, Stireman JO, Villamarín-Cortez S, Vodka S, Volf M, Wagner DL, Walla T, Weiblen GD, Dyer LA.

Proc Natl Acad Sci U S A. 2015 Jan 13;112(2):442-7. doi: 10.1073/pnas.1423042112. Epub 2014 Dec 29.

32.

Enemy-free space for parasitoids.

Murphy SM, Lill JT, Bowers MD, Singer MS.

Environ Entomol. 2014 Dec;43(6):1465-74. doi: 10.1603/EN13201.

PMID:
25479197
33.

Deubiquitinase DUBA is a post-translational brake on interleukin-17 production in T cells.

Rutz S, Kayagaki N, Phung QT, Eidenschenk C, Noubade R, Wang X, Lesch J, Lu R, Newton K, Huang OW, Cochran AG, Vasser M, Fauber BP, DeVoss J, Webster J, Diehl L, Modrusan Z, Kirkpatrick DS, Lill JR, Ouyang W, Dixit VM.

Nature. 2015 Feb 19;518(7539):417-21. doi: 10.1038/nature13979. Epub 2014 Dec 3.

PMID:
25470037
34.

Predicting immunogenic tumour mutations by combining mass spectrometry and exome sequencing.

Yadav M, Jhunjhunwala S, Phung QT, Lupardus P, Tanguay J, Bumbaca S, Franci C, Cheung TK, Fritsche J, Weinschenk T, Modrusan Z, Mellman I, Lill JR, Delamarre L.

Nature. 2014 Nov 27;515(7528):572-6. doi: 10.1038/nature14001.

PMID:
25428506
35.

Intraplant movement of generalist slug caterpillars (Limacodidae: Lepidoptera): effects of host plant and light environment.

Stoepler TM, Lill JT, Murphy SM.

Environ Entomol. 2014 Dec;43(6):1561-73. doi: 10.1603/EN14128. Epub 2014 Oct 7.

PMID:
25290903
36.

Evolutionary divergence in the catalytic activity of the CAM-1, ROR1 and ROR2 kinase domains.

Bainbridge TW, DeAlmeida VI, Izrael-Tomasevic A, Chalouni C, Pan B, Goldsmith J, Schoen AP, Quiñones GA, Kelly R, Lill JR, Sandoval W, Costa M, Polakis P, Arnott D, Rubinfeld B, Ernst JA.

PLoS One. 2014 Jul 16;9(7):e102695. doi: 10.1371/journal.pone.0102695. eCollection 2014.

37.

Stable-isotope-labeled histone peptide library for histone post-translational modification and variant quantification by mass spectrometry.

Lin S, Wein S, Gonzales-Cope M, Otte GL, Yuan ZF, Afjehi-Sadat L, Maile T, Berger SL, Rush J, Lill JR, Arnott D, Garcia BA.

Mol Cell Proteomics. 2014 Sep;13(9):2450-66. doi: 10.1074/mcp.O113.036459. Epub 2014 Jul 7.

38.

Complementary methods for the identification of substrates of proteolysis.

Pham VC, Anania VG, Phung QT, Lill JR.

Methods Enzymol. 2014;544:359-80. doi: 10.1016/B978-0-12-417158-9.00014-5.

PMID:
24974297
39.

Toward understanding ubiquitin-modifying enzymes: from pharmacological targeting to proteomics.

Lill JR, Wertz IE.

Trends Pharmacol Sci. 2014 Apr;35(4):187-207. doi: 10.1016/j.tips.2014.01.005. Epub 2014 Apr 6. Review.

PMID:
24717260
40.

Endosomes are specialized platforms for bacterial sensing and NOD2 signalling.

Nakamura N, Lill JR, Phung Q, Jiang Z, Bakalarski C, de Mazière A, Klumperman J, Schlatter M, Delamarre L, Mellman I.

Nature. 2014 May 8;509(7499):240-4. doi: 10.1038/nature13133. Epub 2014 Mar 30.

PMID:
24695226
41.

Combinatorial approach for large-scale identification of linked peptides from tandem mass spectrometry spectra.

Wang J, Anania VG, Knott J, Rush J, Lill JR, Bourne PE, Bandeira N.

Mol Cell Proteomics. 2014 Apr;13(4):1128-36. doi: 10.1074/mcp.M113.035758. Epub 2014 Feb 3.

42.

Facilitative effects of group feeding on performance of the saddleback caterpillar (Lepidoptera: Limacodidae).

Fiorentino VL, Murphy SM, Stoepler TM, Lill JT.

Environ Entomol. 2014 Feb;43(1):131-8. doi: 10.1603/EN13144.

PMID:
24472205
43.

A turn-key approach for large-scale identification of complex posttranslational modifications.

Wang J, Anania VG, Knott J, Rush J, Lill JR, Bourne PE, Bandeira N.

J Proteome Res. 2014 Mar 7;13(3):1190-9. doi: 10.1021/pr400368u. Epub 2014 Jan 29.

44.
45.

Peptide level immunoaffinity enrichment enhances ubiquitination site identification on individual proteins.

Anania VG, Pham VC, Huang X, Masselot A, Lill JR, Kirkpatrick DS.

Mol Cell Proteomics. 2014 Jan;13(1):145-56. doi: 10.1074/mcp.M113.031062. Epub 2013 Oct 18.

46.

Hemocyte density increases with developmental stage in an immune-challenged forest caterpillar.

Stoepler TM, Castillo JC, Lill JT, Eleftherianos I.

PLoS One. 2013 Aug 6;8(8):e70978. doi: 10.1371/journal.pone.0070978. Print 2013.

47.

Phosphoproteomic analysis implicates the mTORC2-FoxO1 axis in VEGF signaling and feedback activation of receptor tyrosine kinases.

Zhuang G, Yu K, Jiang Z, Chung A, Yao J, Ha C, Toy K, Soriano R, Haley B, Blackwood E, Sampath D, Bais C, Lill JR, Ferrara N.

Sci Signal. 2013 Apr 16;6(271):ra25. doi: 10.1126/scisignal.2003572.

PMID:
23592840
48.

A Novel Peptide-Based SILAC Method to Identify the Posttranslational Modifications Provides Evidence for Unconventional Ubiquitination in the ER-Associated Degradation Pathway.

Anania VG, Bustos DJ, Lill JR, Kirkpatrick DS, Coscoy L.

Int J Proteomics. 2013;2013:857918. doi: 10.1155/2013/857918. Epub 2013 Feb 3.

49.

Phosphorylation of Dishevelled by protein kinase RIPK4 regulates Wnt signaling.

Huang X, McGann JC, Liu BY, Hannoush RN, Lill JR, Pham V, Newton K, Kakunda M, Liu J, Yu C, Hymowitz SG, Hongo JA, Wynshaw-Boris A, Polakis P, Harland RM, Dixit VM.

Science. 2013 Mar 22;339(6126):1441-5. doi: 10.1126/science.1232253. Epub 2013 Jan 31.

50.

Phenological variation in the composition of a temperate forest leaf tie community.

Sigmon E, Lill JT.

Environ Entomol. 2013 Feb;42(1):29-37. doi: 10.1603/EN12064.

PMID:
23339783

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