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A genomic island in a plant beneficial rhizobacterium encodes novel antimicrobial fatty acids and a self-protection shield to enhance its competition.

Wang D, Xu Z, Zhang G, Xia L, Dong X, Li Q, Liles MR, Shao J, Shen Q, Zhang R.

Environ Microbiol. 2019 May 20. doi: 10.1111/1462-2920.14683. [Epub ahead of print]


Pectin-Rich Amendment Enhances Soybean Growth Promotion and Nodulation Mediated by Bacillus Velezensis Strains.

Hassan MK, McInroy JA, Jones J, Shantharaj D, Liles MR, Kloepper JW.

Plants (Basel). 2019 May 9;8(5). pii: E120. doi: 10.3390/plants8050120.


Aeromonas veronii and aerolysin are important for the pathogenesis of motile aeromonad septicemia in cyprinid fish.

Ran C, Qin C, Xie M, Zhang J, Li J, Xie Y, Wang Y, Li S, Liu L, Fu X, Lin Q, Li N, Liles MR, Zhou Z.

Environ Microbiol. 2018 Sep;20(9):3442-3456. doi: 10.1111/1462-2920.14390. Epub 2018 Sep 20.


Endosymbiont genomes yield clues of tubeworm success.

Li Y, Liles MR, Halanych KM.

ISME J. 2018 Nov;12(11):2785-2795. doi: 10.1038/s41396-018-0220-z. Epub 2018 Jul 18.


Draft Genome Sequence of Fish Pathogen Aeromonas bestiarum GA97-22.

Kumru S, Tekedar HC, Griffin MJ, Waldbieser GC, Liles MR, Sonstegard T, Schroeder SG, Lawrence ML, Karsi A.

Genome Announc. 2018 Jun 14;6(24). pii: e00524-18. doi: 10.1128/genomeA.00524-18.


Chloramphenicol Derivatives with Antibacterial Activity Identified by Functional Metagenomics.

Nasrin S, Ganji S, Kakirde KS, Jacob MR, Wang M, Ravu RR, Cobine PA, Khan IA, Wu CC, Mead DA, Li XC, Liles MR.

J Nat Prod. 2018 Jun 22;81(6):1321-1332. doi: 10.1021/acs.jnatprod.7b00903. Epub 2018 Jun 13.


Diverse roles of Hcp family proteins in the environmental fitness and pathogenicity of Aeromonas hydrophila Chinese epidemic strain NJ-35.

Wang N, Liu J, Pang M, Wu Y, Awan F, Liles MR, Lu C, Liu Y.

Appl Microbiol Biotechnol. 2018 Aug;102(16):7083-7095. doi: 10.1007/s00253-018-9116-0. Epub 2018 Jun 3.


Identification of Four Distinct Phylogenetic Groups in Flavobacterium columnare With Fish Host Associations.

LaFrentz BR, García JC, Waldbieser GC, Evenhuis JP, Loch TP, Liles MR, Wong FS, Chang SF.

Front Microbiol. 2018 Mar 13;9:452. doi: 10.3389/fmicb.2018.00452. eCollection 2018.


Novel archaeal thermostable cellulases from an oil reservoir metagenome.

Lewin A, Zhou J, Pham VTT, Haugen T, Zeiny ME, Aarstad O, Liebl W, Wentzel A, Liles MR.

AMB Express. 2017 Sep 29;7(1):183. doi: 10.1186/s13568-017-0485-z.


Draft Genome Sequences of Three Aeromonas hydrophila Isolates from Catfish and Tilapia.

Tekedar HC, Kumru S, Kalindamar S, Karsi A, Waldbieser GC, Sonstegard T, Schroeder SG, Liles MR, Griffin MJ, Lawrence ML.

Genome Announc. 2017 Jan 19;5(3). pii: e01509-16. doi: 10.1128/genomeA.01509-16.


'Aeromonas intestinalis' and 'Aeromonas enterica' isolated from human faeces, 'Aeromonas crassostreae' from oyster and 'Aeromonas aquatilis' isolated from lake water represent novel species.

Figueras MJ, Latif-Eugenín F, Ballester F, Pujol I, Tena D, Berg K, Hossain MJ, Beaz-Hidalgo R, Liles MR.

New Microbes New Infect. 2016 Nov 24;15:74-76. doi: 10.1016/j.nmni.2016.11.019. eCollection 2017 Jan.


Chitin degradation and utilization by virulent Aeromonas hydrophila strain ML10-51K.

Zhang D, Xu DH, Qiu J, Rasmussen-Ivey CR, Liles MR, Beck BH.

Arch Microbiol. 2017 May;199(4):573-579. doi: 10.1007/s00203-016-1326-1. Epub 2016 Dec 28.


Draft Genome Sequence of Pseudomonas mosselii Gil3, Isolated from Catfish and Antagonistic against Hypervirulent Aeromonas hydrophila.

Zhang D, Xu DH, Qiu J, Rasmussen-Ivey CR, Liles MR, Beck BH.

Genome Announc. 2016 Nov 17;4(6). pii: e01305-16. doi: 10.1128/genomeA.01305-16.


Classification of a Hypervirulent Aeromonas hydrophila Pathotype Responsible for Epidemic Outbreaks in Warm-Water Fishes.

Rasmussen-Ivey CR, Hossain MJ, Odom SE, Terhune JS, Hemstreet WG, Shoemaker CA, Zhang D, Xu DH, Griffin MJ, Liu YJ, Figueras MJ, Santos SR, Newton JC, Liles MR.

Front Microbiol. 2016 Oct 18;7:1615. eCollection 2016.


Identification of novel toluene monooxygenase genes in a hydrocarbon-polluted sediment using sequence- and function-based screening of metagenomic libraries.

Bouhajja E, McGuire M, Liles MR, Bataille G, Agathos SN, George IF.

Appl Microbiol Biotechnol. 2017 Jan;101(2):797-808. doi: 10.1007/s00253-016-7934-5. Epub 2016 Oct 26.


Virulence Factors of Aeromonas hydrophila: In the Wake of Reclassification.

Rasmussen-Ivey CR, Figueras MJ, McGarey D, Liles MR.

Front Microbiol. 2016 Aug 25;7:1337. doi: 10.3389/fmicb.2016.01337. eCollection 2016. Review.


Draft Genome Sequences of Four Virulent Aeromonas hydrophila Strains from Catfish Aquaculture.

Tekedar HC, Kumru S, Karsi A, Waldbieser GC, Sonstegard T, Schroeder SG, Liles MR, Griffin MJ, Lawrence ML.

Genome Announc. 2016 Aug 18;4(4). pii: e00860-16. doi: 10.1128/genomeA.00860-16.


Draft Genome Sequence of Aeromonas hydrophila TN97-08.

Tekedar HC, Kumru S, Karsi A, Waldbieser GC, Sonstegard T, Schroeder SG, Liles MR, Griffin MJ, Lawrence ML.

Genome Announc. 2016 May 26;4(3). pii: e00436-16. doi: 10.1128/genomeA.00436-16.


Complete genome of Staphylococcus aureus Tager 104 provides evidence of its relation to modern systemic hospital-acquired strains.

Davis RW 4th, Brannen AD, Hossain MJ, Monsma S, Bock PE, Nahrendorf M, Mead D, Lodes M, Liles MR, Panizzi P.

BMC Genomics. 2016 Mar 3;17:179. doi: 10.1186/s12864-016-2433-8.


Changes in rhizosphere bacterial gene expression following glyphosate treatment.

Newman MM, Lorenz N, Hoilett N, Lee NR, Dick RP, Liles MR, Ramsier C, Kloepper JW.

Sci Total Environ. 2016 May 15;553:32-41. doi: 10.1016/j.scitotenv.2016.02.078. Epub 2016 Feb 21.


Complete Genome Sequence of Streptomyces sp. Strain CCM_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts.

Mariita RM, Bhatnagar S, Hanselmann K, Hossain MJ, Korlach J, Boitano M, Roberts RJ, Liles MR, Moss AG, Leadbetter JR, Newman DK, Dawson SC.

Genome Announc. 2015 Dec 31;3(6). pii: e01506-15. doi: 10.1128/genomeA.01506-15.


Complete Genome Sequence of Curtobacterium sp. Strain MR_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts.

Mariita RM, Bhatnagar S, Hanselmann K, Hossain MJ, Korlach J, Boitano M, Roberts RJ, Liles MR, Moss AG, Leadbetter JR, Newman DK, Dawson SC.

Genome Announc. 2015 Dec 31;3(6). pii: e01504-15. doi: 10.1128/genomeA.01504-15.


Glyphosate effects on soil rhizosphere-associated bacterial communities.

Newman MM, Hoilett N, Lorenz N, Dick RP, Liles MR, Ramsier C, Kloepper JW.

Sci Total Environ. 2016 Feb 1;543(Pt A):155-160. doi: 10.1016/j.scitotenv.2015.11.008. Epub 2015 Nov 12.


Effect of Clostridium perfringens infection and antibiotic administration on microbiota in the small intestine of broiler chickens.

Fasina YO, Newman MM, Stough JM, Liles MR.

Poult Sci. 2016 Feb;95(2):247-60. doi: 10.3382/ps/pev329. Epub 2015 Nov 13.


Deciphering the conserved genetic loci implicated in plant disease control through comparative genomics of Bacillus amyloliquefaciens subsp. plantarum.

Hossain MJ, Ran C, Liu K, Ryu CM, Rasmussen-Ivey CR, Williams MA, Hassan MK, Choi SK, Jeong H, Newman M, Kloepper JW, Liles MR.

Front Plant Sci. 2015 Aug 17;6:631. doi: 10.3389/fpls.2015.00631. eCollection 2015.


Genome modifications and cloning using a conjugally transferable recombineering system.

Hossain MJ, Thurlow CM, Sun D, Nasrin S, Liles MR.

Biotechnol Rep (Amst). 2015 Aug 28;8:24-35. doi: 10.1016/j.btre.2015.08.005. eCollection 2015 Dec.


Litter Breakdown and Microbial Succession on Two Submerged Leaf Species in a Small Forested Stream.

Newman MM, Liles MR, Feminella JW.

PLoS One. 2015 Jun 22;10(6):e0130801. doi: 10.1371/journal.pone.0130801. eCollection 2015.


Draft Genome Sequence of Bacillus amyloliquefaciens AP183 with Antibacterial Activity against Methicillin-Resistant Staphylococcus aureus.

Nasrin S, Hossain MJ, Liles MR.

Genome Announc. 2015 Apr 16;3(2). pii: e00162-15. doi: 10.1128/genomeA.00162-15.


Aeromonas aquatica sp. nov., Aeromonas finlandiensis sp. nov. and Aeromonas lacus sp. nov. isolated from Finnish waters associated with cyanobacterial blooms.

Beaz-Hidalgo R, Latif-Eugenín F, Hossain MJ, Berg K, Niemi RM, Rapala J, Lyra C, Liles MR, Figueras MJ.

Syst Appl Microbiol. 2015 May;38(3):161-8. doi: 10.1016/j.syapm.2015.02.005. Epub 2015 Mar 20.


Bacillusin A, an Antibacterial Macrodiolide from Bacillus amyloliquefaciens AP183.

Ravu RR, Jacob MR, Chen X, Wang M, Nasrin S, Kloepper JW, Liles MR, Mead DA, Khan IA, Li XC.

J Nat Prod. 2015 Apr 24;78(4):924-8. doi: 10.1021/np500911k. Epub 2015 Mar 10.


Strategies to avoid wrongly labelled genomes using as example the detected wrong taxonomic affiliation for aeromonas genomes in the GenBank database.

Beaz-Hidalgo R, Hossain MJ, Liles MR, Figueras MJ.

PLoS One. 2015 Jan 21;10(1):e0115813. doi: 10.1371/journal.pone.0115813. eCollection 2015.


Taxonomic affiliation of new genomes should be verified using average nucleotide identity and multilocus phylogenetic analysis.

Figueras MJ, Beaz-Hidalgo R, Hossain MJ, Liles MR.

Genome Announc. 2014 Dec 4;2(6). pii: e00927-14. doi: 10.1128/genomeA.00927-14.


Draft genome sequences of two novel Aeromonas species recovered in association with cyanobacterial blooms.

Hossain MJ, Beaz-Hidalgo R, Figueras MJ, Liles MR.

Genome Announc. 2014 Nov 20;2(6). pii: e01181-14. doi: 10.1128/genomeA.01181-14.


Three novel virophage genomes discovered from Yellowstone Lake metagenomes.

Zhou J, Sun D, Childers A, McDermott TR, Wang Y, Liles MR.

J Virol. 2015 Jan 15;89(2):1278-85. doi: 10.1128/JVI.03039-14. Epub 2014 Nov 12.


A novel thermostable polymerase for RNA and DNA loop-mediated isothermal amplification (LAMP).

Chander Y, Koelbl J, Puckett J, Moser MJ, Klingele AJ, Liles MR, Carrias A, Mead DA, Schoenfeld TW.

Front Microbiol. 2014 Aug 1;5:395. doi: 10.3389/fmicb.2014.00395. eCollection 2014.


An Asian origin of virulent Aeromonas hydrophila responsible for disease epidemics in United States-farmed catfish.

Hossain MJ, Sun D, McGarey DJ, Wrenn S, Alexander LM, Martino ME, Xing Y, Terhune JS, Liles MR.

MBio. 2014 Jun 3;5(3):e00848-14. doi: 10.1128/mBio.00848-14.


Implication of lateral genetic transfer in the emergence of Aeromonas hydrophila isolates of epidemic outbreaks in channel catfish.

Hossain MJ, Waldbieser GC, Sun D, Capps NK, Hemstreet WB, Carlisle K, Griffin MJ, Khoo L, Goodwin AE, Sonstegard TS, Schroeder S, Hayden K, Newton JC, Terhune JS, Liles MR.

PLoS One. 2013 Nov 20;8(11):e80943. doi: 10.1371/journal.pone.0080943. eCollection 2013.


Microbial community analysis of Deepwater Horizon oil-spill impacted sites along the Gulf coast using functional and phylogenetic markers.

Looper JK, Cotto A, Kim BY, Lee MK, Liles MR, Ní Chadhain SM, Son A.

Environ Sci Process Impacts. 2013 Oct;15(11):2068-79. doi: 10.1039/c3em00200d.


Complete Genome Sequence of a Channel Catfish Epidemic Isolate, Aeromonas hydrophila Strain ML09-119.

Tekedar HC, Waldbieser GC, Karsi A, Liles MR, Griffin MJ, Vamenta S, Sonstegard T, Hossain M, Schroeder SG, Khoo L, Lawrence ML.

Genome Announc. 2013 Sep 19;1(5). pii: e00755-13. doi: 10.1128/genomeA.00755-13.


Complete Genome Sequence of Staphylococcus aureus Tager 104, a Sequence Type 49 Ancestor.

Davis R, Hossain MJ, Liles MR, Panizzi P.

Genome Announc. 2013 Sep 12;1(5). pii: e00706-13. doi: 10.1128/genomeA.00706-13.


Secreted pyomelanin of Legionella pneumophila promotes bacterial iron uptake and growth under iron-limiting conditions.

Zheng H, Chatfield CH, Liles MR, Cianciotto NP.

Infect Immun. 2013 Nov;81(11):4182-91. doi: 10.1128/IAI.00858-13. Epub 2013 Aug 26.


Meeting report: 1st international functional metagenomics workshop may 7-8, 2012, st. Jacobs, ontario, Canada.

Engel K, Ashby D, Brady SF, Cowan DA, Doemer J, Edwards EA, Fiebig K, Martens EC, McCormac D, Mead DA, Miyazaki K, Moreno-Hagelsieb G, O'Gara F, Reid A, Rose DR, Simonet P, Sjöling S, Smalla K, Streit WR, Tedman-Jones J, Valla S, Wellington EM, Wu CC, Liles MR, Neufeld JD, Sessitsch A, Charles TC.

Stand Genomic Sci. 2013 Apr 15;8(1):106-11. doi: 10.4056/sigs.3406845. eCollection 2013 Apr 15.


Rapid quantitative detection of Aeromonas hydrophila strains associated with disease outbreaks in catfish aquaculture.

Griffin MJ, Goodwin AE, Merry GE, Liles MR, Williams MA, Ware C, Waldbieser GC.

J Vet Diagn Invest. 2013 Jul;25(4):473-81. doi: 10.1177/1040638713494210.


Identification of Bacillus strains for biological control of catfish pathogens.

Ran C, Carrias A, Williams MA, Capps N, Dan BC, Newton JC, Kloepper JW, Ooi EL, Browdy CL, Terhune JS, Liles MR.

PLoS One. 2012;7(9):e45793. doi: 10.1371/journal.pone.0045793. Epub 2012 Sep 21.


Macroalgal extracts induce bacterial assemblage shifts and sublethal tissue stress in Caribbean corals.

Morrow KM, Ritson-Williams R, Ross C, Liles MR, Paul VJ.

PLoS One. 2012;7(9):e44859. doi: 10.1371/journal.pone.0044859. Epub 2012 Sep 13.


Bacterial associates of two Caribbean coral species reveal species-specific distribution and geographic variability.

Morrow KM, Moss AG, Chadwick NE, Liles MR.

Appl Environ Microbiol. 2012 Sep;78(18):6438-49. doi: 10.1128/AEM.01162-12. Epub 2012 Jul 6.


An outer membrane porin protein modulates phage susceptibility in Edwardsiella ictaluri.

Hossain MJ, Rahman KhS, Terhune JS, Liles MR.

Microbiology. 2012 Feb;158(Pt 2):474-87. doi: 10.1099/mic.0.054866-0. Epub 2011 Dec 1.


Recovery of as-yet-uncultured soil acidobacteria on dilute solid media.

George IF, Hartmann M, Liles MR, Agathos SN.

Appl Environ Microbiol. 2011 Nov;77(22):8184-8. doi: 10.1128/AEM.05956-11. Epub 2011 Sep 23.


A simplified and cost-effective enrichment protocol for the isolation of Campylobacter spp. from retail broiler meat without microaerobic incubation.

Zhou P, Hussain SK, Liles MR, Arias CR, Backert S, Kieninger J, Oyarzabal OA.

BMC Microbiol. 2011 Aug 3;11:175. doi: 10.1186/1471-2180-11-175.


Polyketide synthase pathways identified from a metagenomic library are derived from soil Acidobacteria.

Parsley LC, Linneman J, Goode AM, Becklund K, George I, Goodman RM, Lopanik NB, Liles MR.

FEMS Microbiol Ecol. 2011 Oct;78(1):176-87. doi: 10.1111/j.1574-6941.2011.01122.x. Epub 2011 May 23.

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