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Items: 33

1.

A mutational comparison of adult and adolescent and young adult (AYA) colon cancer.

Tricoli JV, Boardman LA, Patidar R, Sindiri S, Jang JS, Walsh WD, McGregor PM 3rd, Camalier CE, Mehaffey MG, Furman WL, Bahrami A, Williams PM, Lih CJ, Conley BA, Khan J.

Cancer. 2018 Mar 1;124(5):1070-1082. doi: 10.1002/cncr.31136. Epub 2017 Nov 30.

PMID:
29194591
2.

Considerations of developing an NGS assay for clinical applications in precision oncology: The NCI-MATCH NGS assay experience.

Lih CJ, Takebe N.

Curr Probl Cancer. 2017 May - Jun;41(3):201-211. doi: 10.1016/j.currproblcancer.2017.05.003.

PMID:
28625332
3.

A Phase 2/3 Multicenter, Randomized, Open-Label Study to Compare the Efficacy and Safety of Lenalidomide Versus Investigator's Choice in Patients with Relapsed or Refractory Diffuse Large B-Cell Lymphoma.

Czuczman MS, Trněný M, Davies A, Rule S, Linton KM, Wagner-Johnston N, Gascoyne RD, Slack GW, Brousset P, Eberhard DA, Hernandez-Ilizaliturri FJ, Salles G, Witzig TE, Zinzani PL, Wright GW, Staudt LM, Yang Y, Williams PM, Lih CJ, Russo J, Thakurta A, Hagner P, Fustier P, Song D, Lewis ID.

Clin Cancer Res. 2017 Aug 1;23(15):4127-4137. doi: 10.1158/1078-0432.CCR-16-2818. Epub 2017 Apr 5.

PMID:
28381416
4.

Analytical Validation of the Next-Generation Sequencing Assay for a Nationwide Signal-Finding Clinical Trial: Molecular Analysis for Therapy Choice Clinical Trial.

Lih CJ, Harrington RD, Sims DJ, Harper KN, Bouk CH, Datta V, Yau J, Singh RR, Routbort MJ, Luthra R, Patel KP, Mantha GS, Krishnamurthy S, Ronski K, Walther Z, Finberg KE, Canosa S, Robinson H, Raymond A, Le LP, McShane LM, Polley EC, Conley BA, Doroshow JH, Iafrate AJ, Sklar JL, Hamilton SR, Williams PM.

J Mol Diagn. 2017 Mar;19(2):313-327. doi: 10.1016/j.jmoldx.2016.10.007. Epub 2017 Feb 7.

5.

Certified DNA Reference Materials to Compare HER2 Gene Amplification Measurements Using Next-Generation Sequencing Methods.

Lih CJ, Si H, Das B, Harrington RD, Harper KN, Sims DJ, McGregor PM, Camalier CE, Kayserian AY, Williams PM, He HJ, Almeida JL, Lund SP, Choquette S, Cole KD.

J Mol Diagn. 2016 Sep;18(5):753-761. doi: 10.1016/j.jmoldx.2016.05.008. Epub 2016 Jul 25.

6.

RefCNV: Identification of Gene-Based Copy Number Variants Using Whole Exome Sequencing.

Chang LC, Das B, Lih CJ, Si H, Camalier CE, McGregor PM 3rd, Polley E.

Cancer Inform. 2016 Apr 27;15:65-71. doi: 10.4137/CIN.S36612. eCollection 2016.

7.

Plasmid-Based Materials as Multiplex Quality Controls and Calibrators for Clinical Next-Generation Sequencing Assays.

Sims DJ, Harrington RD, Polley EC, Forbes TD, Mehaffey MG, McGregor PM 3rd, Camalier CE, Harper KN, Bouk CH, Das B, Conley BA, Doroshow JH, Williams PM, Lih CJ.

J Mol Diagn. 2016 May;18(3):336-349. doi: 10.1016/j.jmoldx.2015.11.008.

8.

Analytical Validation and Application of a Targeted Next-Generation Sequencing Mutation-Detection Assay for Use in Treatment Assignment in the NCI-MPACT Trial.

Lih CJ, Sims DJ, Harrington RD, Polley EC, Zhao Y, Mehaffey MG, Forbes TD, Das B, Walsh WD, Datta V, Harper KN, Bouk CH, Rubinstein LV, Simon RM, Conley BA, Chen AP, Kummar S, Doroshow JH, Williams PM.

J Mol Diagn. 2016 Jan;18(1):51-67. doi: 10.1016/j.jmoldx.2015.07.006. Epub 2015 Nov 18.

9.

N of 2 Responders with LMNA-NTRK1.

Lih CJ, Chen AP.

J Natl Cancer Inst. 2015 Nov 12;108(1). pii: djv376. doi: 10.1093/jnci/djv376. Print 2016 Jan. No abstract available.

PMID:
26563357
10.

Expression array analysis of the hepatocyte growth factor invasive program.

Cecchi F, Lih CJ, Lee YH, Walsh W, Rabe DC, Williams PM, Bottaro DP.

Clin Exp Metastasis. 2015 Oct;32(7):659-76. doi: 10.1007/s10585-015-9735-0. Epub 2015 Aug 1.

PMID:
26231668
11.

Robustness of Next Generation Sequencing on Older Formalin-Fixed Paraffin-Embedded Tissue.

Carrick DM, Mehaffey MG, Sachs MC, Altekruse S, Camalier C, Chuaqui R, Cozen W, Das B, Hernandez BY, Lih CJ, Lynch CF, Makhlouf H, McGregor P, McShane LM, Phillips Rohan J, Walsh WD, Williams PM, Gillanders EM, Mechanic LE, Schully SD.

PLoS One. 2015 Jul 29;10(7):e0127353. doi: 10.1371/journal.pone.0127353. eCollection 2015.

12.

Targeting B cell receptor signaling with ibrutinib in diffuse large B cell lymphoma.

Wilson WH, Young RM, Schmitz R, Yang Y, Pittaluga S, Wright G, Lih CJ, Williams PM, Shaffer AL, Gerecitano J, de Vos S, Goy A, Kenkre VP, Barr PM, Blum KA, Shustov A, Advani R, Fowler NH, Vose JM, Elstrom RL, Habermann TM, Barrientos JC, McGreivy J, Fardis M, Chang BY, Clow F, Munneke B, Moussa D, Beaupre DM, Staudt LM.

Nat Med. 2015 Aug;21(8):922-6. doi: 10.1038/nm.3884. Epub 2015 Jul 20.

PMID:
26193343
13.

GeneMed: An Informatics Hub for the Coordination of Next-Generation Sequencing Studies that Support Precision Oncology Clinical Trials.

Zhao Y, Polley EC, Li MC, Lih CJ, Palmisano A, Sims DJ, Rubinstein LV, Conley BA, Chen AP, Williams PM, Kummar S, Doroshow JH, Simon RM.

Cancer Inform. 2015 Mar 19;14(Suppl 2):45-55. doi: 10.4137/CIN.S17282. eCollection 2015. Review.

14.

Application of molecular profiling in clinical trials for advanced metastatic cancers.

Kummar S, Williams PM, Lih CJ, Polley EC, Chen AP, Rubinstein LV, Zhao Y, Simon RM, Conley BA, Doroshow JH.

J Natl Cancer Inst. 2015 Feb 6;107(4). pii: djv003. doi: 10.1093/jnci/djv003. Print 2015 Apr.

15.

Randomized Trial of Oral Cyclophosphamide and Veliparib in High-Grade Serous Ovarian, Primary Peritoneal, or Fallopian Tube Cancers, or BRCA-Mutant Ovarian Cancer.

Kummar S, Oza AM, Fleming GF, Sullivan DM, Gandara DR, Naughton MJ, Villalona-Calero MA, Morgan RJ Jr, Szabo PM, Youn A, Chen AP, Ji J, Allen DE, Lih CJ, Mehaffey MG, Walsh WD, McGregor PM 3rd, Steinberg SM, Williams PM, Kinders RJ, Conley BA, Simon RM, Doroshow JH.

Clin Cancer Res. 2015 Apr 1;21(7):1574-82. doi: 10.1158/1078-0432.CCR-14-2565. Epub 2015 Jan 14.

16.

Determining cell-of-origin subtypes of diffuse large B-cell lymphoma using gene expression in formalin-fixed paraffin-embedded tissue.

Scott DW, Wright GW, Williams PM, Lih CJ, Walsh W, Jaffe ES, Rosenwald A, Campo E, Chan WC, Connors JM, Smeland EB, Mottok A, Braziel RM, Ott G, Delabie J, Tubbs RR, Cook JR, Weisenburger DD, Greiner TC, Glinsmann-Gibson BJ, Fu K, Staudt LM, Gascoyne RD, Rimsza LM.

Blood. 2014 Feb 20;123(8):1214-7. doi: 10.1182/blood-2013-11-536433. Epub 2014 Jan 7.

17.

Correlation analyses of clinical and molecular findings identify candidate biological pathways in systemic juvenile idiopathic arthritis.

Ling XB, Macaubas C, Alexander HC, Wen Q, Chen E, Peng S, Sun Y, Deshpande C, Pan KH, Lin R, Lih CJ, Chang SY, Lee T, Sandborg C, Begovich AB, Cohen SN, Mellins ED.

BMC Med. 2012 Oct 23;10:125. doi: 10.1186/1741-7015-10-125.

18.

Alternative activation in systemic juvenile idiopathic arthritis monocytes.

Macaubas C, Nguyen KD, Peck A, Buckingham J, Deshpande C, Wong E, Alexander HC, Chang SY, Begovich A, Sun Y, Park JL, Pan KH, Lin R, Lih CJ, Augustine EM, Phillips C, Hadjinicolaou AV, Lee T, Mellins ED.

Clin Immunol. 2012 Mar;142(3):362-72. doi: 10.1016/j.clim.2011.12.008. Epub 2011 Dec 28.

19.

Genomic expression profiling of TNF-alpha-treated BDC2.5 diabetogenic CD4+ T cells.

Lee LF, Lih CJ, Huang CJ, Cao T, Cohen SN, McDevitt HO.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):10107-12. doi: 10.1073/pnas.0803336105. Epub 2008 Jul 15.

20.

Glioma cells on the run - the migratory transcriptome of 10 human glioma cell lines.

Demuth T, Rennert JL, Hoelzinger DB, Reavie LB, Nakada M, Beaudry C, Nakada S, Anderson EM, Henrichs AN, McDonough WS, Holz D, Joy A, Lin R, Pan KH, Lih CJ, Cohen SN, Berens ME.

BMC Genomics. 2008 Jan 29;9:54. doi: 10.1186/1471-2164-9-54.

21.

Txr1: a transcriptional regulator of thrombospondin-1 that modulates cellular sensitivity to taxanes.

Lih CJ, Wei W, Cohen SN.

Genes Dev. 2006 Aug 1;20(15):2082-95. Epub 2006 Jul 17.

22.

Cross-regulation among disparate antibiotic biosynthetic pathways of Streptomyces coelicolor.

Huang J, Shi J, Molle V, Sohlberg B, Weaver D, Bibb MJ, Karoonuthaisiri N, Lih CJ, Kao CM, Buttner MJ, Cohen SN.

Mol Microbiol. 2005 Dec;58(5):1276-87.

23.

Effects of threshold choice on biological conclusions reached during analysis of gene expression by DNA microarrays.

Pan KH, Lih CJ, Cohen SN.

Proc Natl Acad Sci U S A. 2005 Jun 21;102(25):8961-5. Epub 2005 Jun 10.

24.

An integrated data analysis approach to characterize genes highly expressed in hepatocellular carcinoma.

Patil MA, Chua MS, Pan KH, Lin R, Lih CJ, Cheung ST, Ho C, Li R, Fan ST, Cohen SN, Chen X, So S.

Oncogene. 2005 May 26;24(23):3737-47.

PMID:
15735714
25.

Analysis of DNA microarrays using algorithms that employ rule-based expert knowledge.

Pan KH, Lih CJ, Cohen SN.

Proc Natl Acad Sci U S A. 2002 Feb 19;99(4):2118-23.

27.
28.

Development of a microchamber which spontaneously selects high-quality sperm for use in in vitro fertilization or micromanipulation.

Lih CH, Obasaju M, McCaffrey C, Gordon JW.

J Assist Reprod Genet. 1996 Sep;13(8):657-62.

PMID:
8897126
29.

The platelet-derived growth factor alpha-receptor is encoded by a growth-arrest-specific (gas) gene.

Lih CJ, Cohen SN, Wang C, Lin-Chao S.

Proc Natl Acad Sci U S A. 1996 May 14;93(10):4617-22.

30.

Rapid identification and isolation of transcriptionally active regions from mouse genomes.

Lih CJ, Wu SM, Lin-Chao S.

Gene. 1995 Oct 27;164(2):289-94.

PMID:
7590345
31.

Infertile couples with normal counts who require subzonal sperm insertion possess a fertility defect that affects zona pellucida penetration.

Lih CH, Grunfeld L, Sandler B, Drews MR, Navot D, Gordon JW.

Hum Reprod. 1994 Dec;9(12):2335-8.

PMID:
7714153
32.

Analysis of the Drosophila gene for the laminin B1 chain.

Gow CH, Chang HY, Lih CJ, Chang TW, Hui CF.

DNA Cell Biol. 1993 Sep;12(7):573-87.

PMID:
8397815
33.

A new rapid method of producing microneedles for subzonal sperm insertion.

Gordon JW, Lih CH, Navot D, Zetner BS, Laufer N.

J Assist Reprod Genet. 1993 Aug;10(6):444-8. No abstract available.

PMID:
8019096

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