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The interaction between genotype and maternal nutritional environments affects tomato seed and seedling quality.

Geshnizjani N, Sarikhani Khorami S, Willems LAJ, Snoek BL, Hilhorst HWM, Ligterink W.

J Exp Bot. 2019 May 9;70(10):2905-2918. doi: 10.1093/jxb/erz101.


Induction of desiccation tolerance in desiccation sensitive Citrus limon seeds.

Marques A, Nijveen H, Somi C, Ligterink W, Hilhorst H.

J Integr Plant Biol. 2019 May;61(5):624-638. doi: 10.1111/jipb.12788. Epub 2019 Mar 28.


Role for Arabidopsis PLC7 in Stomatal Movement, Seed Mucilage Attachment, and Leaf Serration.

van Wijk R, Zhang Q, Zarza X, Lamers M, Marquez FR, Guardia A, Scuffi D, García-Mata C, Ligterink W, Haring MA, Laxalt AM, Munnik T.

Front Plant Sci. 2018 Nov 27;9:1721. doi: 10.3389/fpls.2018.01721. eCollection 2018.


Dissecting the Genomic Diversification of Late Embryogenesis Abundant (LEA) Protein Gene Families in Plants.

Artur MAS, Zhao T, Ligterink W, Schranz E, Hilhorst HWM.

Genome Biol Evol. 2019 Feb 1;11(2):459-471. doi: 10.1093/gbe/evy248.


Characterization of and genetic variation for tomato seed thermo-inhibition and thermo-dormancy.

Geshnizjani N, Ghaderi-Far F, Willems LAJ, Hilhorst HWM, Ligterink W.

BMC Plant Biol. 2018 Oct 11;18(1):229. doi: 10.1186/s12870-018-1455-6.


A disturbed auxin signaling affects adventitious root outgrowth in Solanum dulcamara under complete submergence.

Yang X, Jansen MJ, Zhang Q, Sergeeva L, Ligterink W, Mariani C, Rieu I, Visser EJW.

J Plant Physiol. 2018 May - Jun;224-225:11-18. doi: 10.1016/j.jplph.2018.03.006. Epub 2018 Mar 19.


Arabidopsis Phospholipase C3 is Involved in Lateral Root Initiation and ABA Responses in Seed Germination and Stomatal Closure.

Zhang Q, van Wijk R, Shahbaz M, Roels W, Schooten BV, Vermeer JEM, Zarza X, Guardia A, Scuffi D, García-Mata C, Laha D, Williams P, Willems LAJ, Ligterink W, Hoffmann-Benning S, Gillaspy G, Schaaf G, Haring MA, Laxalt AM, Munnik T.

Plant Cell Physiol. 2018 Mar 1;59(3):469-486. doi: 10.1093/pcp/pcx194.


Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 × Shahdara RIL Population.

Serin EAR, Snoek LB, Nijveen H, Willems LAJ, Jiménez-Gómez JM, Hilhorst HWM, Ligterink W.

Front Genet. 2017 Dec 5;8:201. doi: 10.3389/fgene.2017.00201. eCollection 2017.


Metabolomic analysis of tomato seed germination.

Kazmi RH, Willems LAJ, Joosen RVL, Khan N, Ligterink W, Hilhorst HWM.

Metabolomics. 2017;13(12):145. doi: 10.1007/s11306-017-1284-x. Epub 2017 Oct 23.


Metabolite profiling and associated gene expression reveal two metabolic shifts during the seed-to-seedling transition in Arabidopsis thaliana.

Silva AT, Ligterink W, Hilhorst HWM.

Plant Mol Biol. 2017 Nov;95(4-5):481-496. doi: 10.1007/s11103-017-0665-x. Epub 2017 Oct 18.


Estimation of metabolite networks with regard to a specific covariable: applications to plant and human data.

Bartzis G, Deelen J, Maia J, Ligterink W, Hilhorst HWM, Houwing-Duistermaat JJ, van Eeuwijk F, Uh HW.

Metabolomics. 2017;13(11):129. doi: 10.1007/s11306-017-1263-2. Epub 2017 Sep 22.


A footprint of desiccation tolerance in the genome of Xerophyta viscosa.

Costa MD, Artur MA, Maia J, Jonkheer E, Derks MF, Nijveen H, Williams B, Mundree SG, Jiménez-Gómez JM, Hesselink T, Schijlen EG, Ligterink W, Oliver MJ, Farrant JM, Hilhorst HW.

Nat Plants. 2017 Mar 27;3:17038. doi: 10.1038/nplants.2017.38.


AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.

Nijveen H, Ligterink W, Keurentjes JJ, Loudet O, Long J, Sterken MG, Prins P, Hilhorst HW, de Ridder D, Kammenga JE, Snoek BL.

Plant J. 2017 Mar;89(6):1225-1235. doi: 10.1111/tpj.13457. Epub 2017 Feb 13.


High-Throughput Scoring of Seed Germination.

Ligterink W, Hilhorst HW.

Methods Mol Biol. 2017;1497:57-72.


Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping.

Thoen MP, Davila Olivas NH, Kloth KJ, Coolen S, Huang PP, Aarts MG, Bac-Molenaar JA, Bakker J, Bouwmeester HJ, Broekgaarden C, Bucher J, Busscher-Lange J, Cheng X, Fradin EF, Jongsma MA, Julkowska MM, Keurentjes JJ, Ligterink W, Pieterse CM, Ruyter-Spira C, Smant G, Testerink C, Usadel B, van Loon JJ, van Pelt JA, van Schaik CC, van Wees SC, Visser RG, Voorrips R, Vosman B, Vreugdenhil D, Warmerdam S, Wiegers GL, van Heerwaarden J, Kruijer W, van Eeuwijk FA, Dicke M.

New Phytol. 2017 Feb;213(3):1346-1362. doi: 10.1111/nph.14220. Epub 2016 Oct 4.


Key genes involved in desiccation tolerance and dormancy across life forms.

Costa MCD, Farrant JM, Oliver MJ, Ligterink W, Buitink J, Hilhorst HMW.

Plant Sci. 2016 Oct;251:162-168. doi: 10.1016/j.plantsci.2016.02.001. Epub 2016 Feb 3.


CyLineUp: A Cytoscape app for visualizing data in network small multiples.

Costa MCD, Slijkhuis T, Ligterink W, Hilhorst HWM, de Ridder D, Nijveen H.

F1000Res. 2016 Apr 11;5:635. doi: 10.12688/f1000research.8402.1. eCollection 2016.


Effect of osmopriming on germination and initial growth of Physalis angulata L. under salt stress and on expression of associated genes.

Souza MO, Pelacani CR, Willems LA, Castro RD, Hilhorst HW, Ligterink W.

An Acad Bras Cienc. 2016;88 Suppl 1:503-16. doi: 10.1590/0001-3765201620150043.


Learning from Co-expression Networks: Possibilities and Challenges.

Serin EA, Nijveen H, Hilhorst HW, Ligterink W.

Front Plant Sci. 2016 Apr 8;7:444. doi: 10.3389/fpls.2016.00444. eCollection 2016. Review.


Post-embryonic Hourglass Patterns Mark Ontogenetic Transitions in Plant Development.

Drost HG, Bellstädt J, Ó'Maoiléidigh DS, Silva AT, Gabel A, Weinholdt C, Ryan PT, Dekkers BJ, Bentsink L, Hilhorst HW, Ligterink W, Wellmer F, Grosse I, Quint M.

Mol Biol Evol. 2016 May;33(5):1158-63. doi: 10.1093/molbev/msw039. Epub 2016 Feb 23.


A Predictive Coexpression Network Identifies Novel Genes Controlling the Seed-to-Seedling Phase Transition in Arabidopsis thaliana.

Silva AT, Ribone PA, Chan RL, Ligterink W, Hilhorst HW.

Plant Physiol. 2016 Apr;170(4):2218-31. doi: 10.1104/pp.15.01704. Epub 2016 Feb 17.


Gene expression profiling of the green seed problem in Soybean.

Teixeira RN, Ligterink W, França-Neto Jde B, Hilhorst HW, da Silva EA.

BMC Plant Biol. 2016 Feb 1;16:37. doi: 10.1186/s12870-016-0729-0.


Time-series analysis of the transcriptome of the re-establishment of desiccation tolerance by ABA in germinated Arabidopsis thaliana seeds.

Costa MC, Nijveen H, Ligterink W, Buitink J, Hilhorst HW.

Genom Data. 2015 Jun 6;5:154-6. doi: 10.1016/j.gdata.2015.06.003. eCollection 2015 Sep.


Metabolite profiling of Ricinus communis germination at different temperatures provides new insights into thermo-mediated requirements for successful seedling establishment.

Ribeiro PR, Willems LA, Mutimawurugo MC, Fernandez LG, de Castro RD, Ligterink W, Hilhorst HW.

Plant Sci. 2015 Oct;239:180-91. doi: 10.1016/j.plantsci.2015.08.002. Epub 2015 Aug 4.


Effect of temperature on biomass allocation in seedlings of two contrasting genotypes of the oilseed crop Ricinus communis.

Ribeiro PR, Zanotti RF, Deflers C, Fernandez LG, Castro RD, Ligterink W, Hilhorst HW.

J Plant Physiol. 2015 Aug 1;185:31-9. doi: 10.1016/j.jplph.2015.07.005. Epub 2015 Jul 31.


Expression profiles of genes related to carbohydrate metabolism provide new insights into carbohydrate accumulation in seeds and seedlings of Ricinus communis in response to temperature.

Ribeiro PR, Ligterink W, Hilhorst HW.

Plant Physiol Biochem. 2015 Oct;95:103-12. doi: 10.1016/j.plaphy.2015.07.023. Epub 2015 Jul 26.


Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains.

Zych K, Li Y, van der Velde JK, Joosen RV, Ligterink W, Jansen RC, Arends D.

BMC Bioinformatics. 2015 Feb 19;16:51. doi: 10.1186/s12859-015-0475-6.


A gene co-expression network predicts functional genes controlling the re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds.

Costa MC, Righetti K, Nijveen H, Yazdanpanah F, Ligterink W, Buitink J, Hilhorst HW.

Planta. 2015 Aug;242(2):435-49. doi: 10.1007/s00425-015-2283-7. Epub 2015 Mar 26.


Acquisition and loss of desiccation tolerance in seeds: from experimental model to biological relevance.

Dekkers BJ, Costa MC, Maia J, Bentsink L, Ligterink W, Hilhorst HW.

Planta. 2015 Mar;241(3):563-77. doi: 10.1007/s00425-014-2240-x. Epub 2015 Jan 8. Review.


Physiological and biochemical responses of Ricinus communis seedlings to different temperatures: a metabolomics approach.

Ribeiro PR, Fernandez LG, de Castro RD, Ligterink W, Hilhorst HW.

BMC Plant Biol. 2014 Aug 12;14:223. doi: 10.1186/s12870-014-0223-5.


Abscisic acid (ABA) sensitivity regulates desiccation tolerance in germinated Arabidopsis seeds.

Maia J, Dekkers BJ, Dolle MJ, Ligterink W, Hilhorst HW.

New Phytol. 2014 Jul;203(1):81-93. doi: 10.1111/nph.12785. Epub 2014 Apr 3.


Identifying genotype-by-environment interactions in the metabolism of germinating arabidopsis seeds using generalized genetical genomics.

Joosen RV, Arends D, Li Y, Willems LA, Keurentjes JJ, Ligterink W, Jansen RC, Hilhorst HW.

Plant Physiol. 2013 Jun;162(2):553-66. doi: 10.1104/pp.113.216176. Epub 2013 Apr 19.


Exploring the natural variation for seedling traits and their link with seed dimensions in tomato.

Khan N, Kazmi RH, Willems LA, van Heusden AW, Ligterink W, Hilhorst HW.

PLoS One. 2012;7(8):e43991. doi: 10.1371/journal.pone.0043991. Epub 2012 Aug 30.


The re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds and its associated transcriptome.

Maia J, Dekkers BJ, Provart NJ, Ligterink W, Hilhorst HW.

PLoS One. 2011;6(12):e29123. doi: 10.1371/journal.pone.0029123. Epub 2011 Dec 14.


Visualizing the genetic landscape of Arabidopsis seed performance.

Joosen RV, Arends D, Willems LA, Ligterink W, Jansen RC, Hilhorst HW.

Plant Physiol. 2012 Feb;158(2):570-89. doi: 10.1104/pp.111.186676. Epub 2011 Dec 12.


Complex genetics controls natural variation among seed quality phenotypes in a recombinant inbred population of an interspecific cross between Solanum lycopersicum × Solanum pimpinellifolium.

Kazmi RH, Khan N, Willems LA, VAN Heusden AW, Ligterink W, Hilhorst HW.

Plant Cell Environ. 2012 May;35(5):929-51. doi: 10.1111/j.1365-3040.2011.02463.x. Epub 2011 Dec 8.


Identification of reference genes for RT-qPCR expression analysis in Arabidopsis and tomato seeds.

Dekkers BJ, Willems L, Bassel GW, van Bolderen-Veldkamp RP, Ligterink W, Hilhorst HW, Bentsink L.

Plant Cell Physiol. 2012 Jan;53(1):28-37. doi: 10.1093/pcp/pcr113. Epub 2011 Aug 18.


Advances in genetical genomics of plants.

Joosen RV, Ligterink W, Hilhorst HW, Keurentjes JJ.

Curr Genomics. 2009 Dec;10(8):540-9. doi: 10.2174/138920209789503914.


GERMINATOR: a software package for high-throughput scoring and curve fitting of Arabidopsis seed germination.

Joosen RV, Kodde J, Willems LA, Ligterink W, van der Plas LH, Hilhorst HW.

Plant J. 2010 Apr 1;62(1):148-59. doi: 10.1111/j.1365-313X.2009.04116.x. Epub 2009 Dec 22.


Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome.

Judelson HS, Ah-Fong AM, Aux G, Avrova AO, Bruce C, Cakir C, da Cunha L, Grenville-Briggs L, Latijnhouwers M, Ligterink W, Meijer HJ, Roberts S, Thurber CS, Whisson SC, Birch PR, Govers F, Kamoun S, van West P, Windass J.

Mol Plant Microbe Interact. 2008 Apr;21(4):433-47. doi: 10.1094/MPMI-21-4-0433.


Activation of members of a MAPK module in beta-glucan elicitor-mediated non-host resistance of soybean.

Daxberger A, Nemak A, Mithöfer A, Fliegmann J, Ligterink W, Hirt H, Ebel J.

Planta. 2007 May;225(6):1559-71. Epub 2006 Nov 23.


A transmembrane phospholipase D in Phytophthora; a novel PLD subfamily.

Meijer HJ, Latijnhouwers M, Ligterink W, Govers F.

Gene. 2005 May 9;350(2):173-82. Epub 2005 Apr 9.


A Galpha subunit controls zoospore motility and virulence in the potato late blight pathogen Phytophthora infestans.

Latijnhouwers M, Ligterink W, Vleeshouwers VG, van West P, Govers F.

Mol Microbiol. 2004 Feb;51(4):925-36.


Molecular-genetic dissection of the late blight pathogen Phytophthora infestans.

Govers F, Jiang RH, Latijnhouwers M, Ligterink W, Vijn I, Weide R.

Meded Rijksuniv Gent Fak Landbouwkd Toegep Biol Wet. 2001;66(2a):3-6. Review. No abstract available.


Mitogen-activated protein [MAP] kinase pathways in plants: versatile signaling tools.

Ligterink W, Hirt H.

Int Rev Cytol. 2001;201:209-75. Review.


Differential activation of four specific MAPK pathways by distinct elicitors.

Cardinale F, Jonak C, Ligterink W, Niehaus K, Boller T, Hirt H.

J Biol Chem. 2000 Nov 24;275(47):36734-40.


Phytophthora parasitica elicitor-induced reactions in cells of Petroselinum crispum.

Fellbrich G, Blume B, Brunner F, Hirt H, Kroj T, Ligterink W, Romanski A, Nürnberger T.

Plant Cell Physiol. 2000 Jun;41(6):692-701.


Distinct osmo-sensing protein kinase pathways are involved in signalling moderate and severe hyper-osmotic stress

Munnik T, Ligterink W, Meskiene I I, Calderini O, Beyerly J, Musgrave A, Hirt H.

Plant J. 1999 Nov;20(4):381-8.


MAP kinases in plant signal transduction: how many, and what for?

Ligterink W.

Results Probl Cell Differ. 2000;27:11-27. Review.


MAP kinases in plant signal transduction.

Jonak C, Ligterink W, Hirt H.

Cell Mol Life Sci. 1999 Feb;55(2):204-13. Review.


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