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Classifying the Unclassified: A Phage Classification Method.

Chibani CM, Farr A, Klama S, Dietrich S, Liesegang H.

Viruses. 2019 Feb 24;11(2). pii: E195. doi: 10.3390/v11020195.


Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM6LP Isolated from Lolium perenne.

Wemheuer F, Hollensteiner J, Poehlein A, Liesegang H, Daniel R, Wemheuer B.

Genome Announc. 2018 Feb 1;6(5). pii: e00011-18. doi: 10.1128/genomeA.00011-18.


Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM5LP Isolated from Lolium perenne.

Hollensteiner J, Poehlein A, Granzow S, Liesegang H, Daniel R, Vidal S, Wemheuer F.

Genome Announc. 2018 Jan 25;6(4). pii: e01517-17. doi: 10.1128/genomeA.01517-17.


Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile.

Groß U, Brzuszkiewicz E, Gunka K, Starke J, Riedel T, Bunk B, Spröer C, Wetzel D, Poehlein A, Chibani C, Bohne W, Overmann J, Zimmermann O, Daniel R, Liesegang H.

BMC Genomics. 2018 Jan 2;19(1):1. doi: 10.1186/s12864-017-4368-0.


Draft Genome Sequence of Vibrio splendidus DSM 19640.

Chibani CM, Poehlein A, Roth O, Liesegang H, Wendling CC.

Genome Announc. 2017 Nov 30;5(48). pii: e01368-17. doi: 10.1128/genomeA.01368-17.


Complete genome sequence of the nematicidal Bacillus thuringiensis MYBT18247.

Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosenstiel P, Schulenburg H, Liesegang H.

J Biotechnol. 2017 Oct 20;260:48-52. doi: 10.1016/j.jbiotec.2017.09.003. Epub 2017 Sep 9.


Complete Genome sequence of the nematicidal Bacillus thuringiensis MYBT18246.

Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosentstiel P, Schulenburg H, Liesegang H.

Stand Genomic Sci. 2017 Aug 24;12:48. doi: 10.1186/s40793-017-0259-x. eCollection 2017.


Small RNA mediated repression of subtilisin production in Bacillus licheniformis.

Hertel R, Meyerjürgens S, Voigt B, Liesegang H, Volland S.

Sci Rep. 2017 Jul 18;7(1):5699. doi: 10.1038/s41598-017-05628-y.


High metabolic versatility of different toxigenic and non-toxigenic Clostridioides difficile isolates.

Riedel T, Wetzel D, Hofmann JD, Plorin SPEO, Dannheim H, Berges M, Zimmermann O, Bunk B, Schober I, Spröer C, Liesegang H, Jahn D, Overmann J, Groß U, Neumann-Schaal M.

Int J Med Microbiol. 2017 Sep;307(6):311-320. doi: 10.1016/j.ijmm.2017.05.007. Epub 2017 Jun 1.


Tripartite species interaction: eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria.

Wendling CC, Piecyk A, Refardt D, Chibani C, Hertel R, Liesegang H, Bunk B, Overmann J, Roth O.

BMC Evol Biol. 2017 Apr 11;17(1):98. doi: 10.1186/s12862-017-0930-2.


Draft Genome Sequence of Bacillus pumilus Strain GM3FR, an Endophyte Isolated from Aerial Plant Tissues of Festuca rubra L.

Hollensteiner J, Poehlein A, Daniel R, Liesegang H, Vidal S, Wemheuer F.

Genome Announc. 2017 Mar 30;5(13). pii: e00085-17. doi: 10.1128/genomeA.00085-17.


Manual curation and reannotation of the genomes of Clostridium difficile 630Δerm and C. difficile 630.

Dannheim H, Riedel T, Neumann-Schaal M, Bunk B, Schober I, Spröer C, Chibani CM, Gronow S, Liesegang H, Overmann J, Schomburg D.

J Med Microbiol. 2017 Mar;66(3):286-293. doi: 10.1099/jmm.0.000427.


Bacillus thuringiensis and Bacillus weihenstephanensis Inhibit the Growth of Phytopathogenic Verticillium Species.

Hollensteiner J, Wemheuer F, Harting R, Kolarzyk AM, Diaz Valerio SM, Poehlein A, Brzuszkiewicz EB, Nesemann K, Braus-Stromeyer SA, Braus GH, Daniel R, Liesegang H.

Front Microbiol. 2017 Jan 18;7:2171. doi: 10.3389/fmicb.2016.02171. eCollection 2016.


Complete Genome Sequence of the Clostridium difficile Type Strain DSM 1296T.

Riedel T, Bunk B, Wittmann J, Thürmer A, Spröer C, Gronow S, Liesegang H, Daniel R, Overmann J.

Genome Announc. 2015 Oct 8;3(5). pii: e01186-15. doi: 10.1128/genomeA.01186-15.


Host-Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes.

Masri L, Branca A, Sheppard AE, Papkou A, Laehnemann D, Guenther PS, Prahl S, Saebelfeld M, Hollensteiner J, Liesegang H, Brzuszkiewicz E, Daniel R, Michiels NK, Schulte RD, Kurtz J, Rosenstiel P, Telschow A, Bornberg-Bauer E, Schulenburg H.

PLoS Biol. 2015 Jun 4;13(6):e1002169. doi: 10.1371/journal.pbio.1002169. eCollection 2015 Jun.


Genome Resequencing of the Virulent and Multidrug-Resistant Reference Strain Clostridium difficile 630.

Riedel T, Bunk B, Thürmer A, Spröer C, Brzuszkiewicz E, Abt B, Gronow S, Liesegang H, Daniel R, Overmann J.

Genome Announc. 2015 Apr 9;3(2). pii: e00276-15. doi: 10.1128/genomeA.00276-15.


Genome-based identification of active prophage regions by next generation sequencing in Bacillus licheniformis DSM13.

Hertel R, Rodríguez DP, Hollensteiner J, Dietrich S, Leimbach A, Hoppert M, Liesegang H, Volland S.

PLoS One. 2015 Mar 26;10(3):e0120759. doi: 10.1371/journal.pone.0120759. eCollection 2015.


The two putative comS homologs of the biotechnologically important Bacillus licheniformis do not contribute to competence development.

Jakobs M, Hoffmann K, Liesegang H, Volland S, Meinhardt F.

Appl Microbiol Biotechnol. 2015 Mar;99(5):2255-66. doi: 10.1007/s00253-014-6291-5. Epub 2014 Dec 19.


Conjugative reporter system for the use in Bacillus licheniformis and closely related Bacilli.

Hertel R, Volland S, Liesegang H.

Lett Appl Microbiol. 2015 Feb;60(2):162-7. doi: 10.1111/lam.12352. Epub 2014 Dec 15.


Cell physiology of the biotechnological relevant bacterium Bacillus pumilus-an omics-based approach.

Handtke S, Volland S, Methling K, Albrecht D, Becher D, Nehls J, Bongaerts J, Maurer KH, Lalk M, Liesegang H, Voigt B, Daniel R, Hecker M.

J Biotechnol. 2014 Dec 20;192 Pt A:204-14. doi: 10.1016/j.jbiotec.2014.08.028. Epub 2014 Oct 2.


Analysis and comparative genomics of ICEMh1, a novel integrative and conjugative element (ICE) of Mannheimia haemolytica.

Eidam C, Poehlein A, Leimbach A, Michael GB, Kadlec K, Liesegang H, Daniel R, Sweeney MT, Murray RW, Watts JL, Schwarz S.

J Antimicrob Chemother. 2015 Jan;70(1):93-7. doi: 10.1093/jac/dku361. Epub 2014 Sep 18.


Unravelling the genetic basis for competence development of auxotrophic Bacillus licheniformis 9945A strains.

Jakobs M, Hoffmann K, Grabke A, Neuber S, Liesegang H, Volland S, Meinhardt F.

Microbiology. 2014 Oct;160(Pt 10):2136-47. doi: 10.1099/mic.0.079236-0. Epub 2014 Jul 9.


TraV: a genome context sensitive transcriptome browser.

Dietrich S, Wiegand S, Liesegang H.

PLoS One. 2014 Apr 7;9(4):e93677. doi: 10.1371/journal.pone.0093677. eCollection 2014.


How to kill the honey bee larva: genomic potential and virulence mechanisms of Paenibacillus larvae.

Djukic M, Brzuszkiewicz E, Fünfhaus A, Voss J, Gollnow K, Poppinga L, Liesegang H, Garcia-Gonzalez E, Genersch E, Daniel R.

PLoS One. 2014 Mar 5;9(3):e90914. doi: 10.1371/journal.pone.0090914. eCollection 2014.


Fermentation stage-dependent adaptations of Bacillus licheniformis during enzyme production.

Wiegand S, Voigt B, Albrecht D, Bongaerts J, Evers S, Hecker M, Daniel R, Liesegang H.

Microb Cell Fact. 2013 Dec 6;12:120. doi: 10.1186/1475-2859-12-120.


RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation.

Wiegand S, Dietrich S, Hertel R, Bongaerts J, Evers S, Volland S, Daniel R, Liesegang H.

BMC Genomics. 2013 Oct 1;14:667. doi: 10.1186/1471-2164-14-667.


Size unlimited markerless deletions by a transconjugative plasmid-system in Bacillus licheniformis.

Rachinger M, Bauch M, Strittmatter A, Bongaerts J, Evers S, Maurer KH, Daniel R, Liebl W, Liesegang H, Ehrenreich A.

J Biotechnol. 2013 Sep 20;167(4):365-9. doi: 10.1016/j.jbiotec.2013.07.026. Epub 2013 Jul 31.


First Insights into the Completely Annotated Genome Sequence of Bacillus licheniformis Strain 9945A.

Rachinger M, Volland S, Meinhardt F, Daniel R, Liesegang H.

Genome Announc. 2013 Aug 1;1(4). pii: e00525-13. doi: 10.1128/genomeA.00525-13.


Complete Genome Sequence of Mannheimia haemolytica Strain 42548 from a Case of Bovine Respiratory Disease.

Eidam C, Poehlein A, Brenner Michael G, Kadlec K, Liesegang H, Brzuszkiewicz E, Daniel R, Sweeney MT, Murray RW, Watts JL, Schwarz S.

Genome Announc. 2013 May 30;1(3). pii: e00318-13. doi: 10.1128/genomeA.00318-13.


Complete Genome Sequence of Geobacillus sp. Strain GHH01, a Thermophilic Lipase-Secreting Bacterium.

Wiegand S, Rabausch U, Chow J, Daniel R, Streit WR, Liesegang H.

Genome Announc. 2013 Apr 25;1(2):e0009213. doi: 10.1128/genomeA.00092-13.


Complete Genome Sequence of Bacillus thuringiensis Strain 407 Cry-.

Sheppard AE, Poehlein A, Rosenstiel P, Liesegang H, Schulenburg H.

Genome Announc. 2013 Jan;1(1). pii: e00158-12. doi: 10.1128/genomeA.00158-12. Epub 2013 Jan 31.


Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life.

Thole S, Kalhoefer D, Voget S, Berger M, Engelhardt T, Liesegang H, Wollherr A, Kjelleberg S, Daniel R, Simon M, Thomas T, Brinkhoff T.

ISME J. 2012 Dec;6(12):2229-44. doi: 10.1038/ismej.2012.62. Epub 2012 Jun 21.


Genetic analysis of the upper phenylacetate catabolic pathway in the production of tropodithietic acid by Phaeobacter gallaeciensis.

Berger M, Brock NL, Liesegang H, Dogs M, Preuth I, Simon M, Dickschat JS, Brinkhoff T.

Appl Environ Microbiol. 2012 May;78(10):3539-51. doi: 10.1128/AEM.07657-11. Epub 2012 Mar 9.


Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01.

Gounder K, Brzuszkiewicz E, Liesegang H, Wollherr A, Daniel R, Gottschalk G, Reva O, Kumwenda B, Srivastava M, Bricio C, Berenguer J, van Heerden E, Litthauer D.

BMC Genomics. 2011 Nov 24;12:577. doi: 10.1186/1471-2164-12-577.


Genomic analysis reveals Lactobacillus sanfranciscensis as stable element in traditional sourdoughs.

Vogel RF, Pavlovic M, Ehrmann MA, Wiezer A, Liesegang H, Offschanka S, Voget S, Angelov A, Böcker G, Liebl W.

Microb Cell Fact. 2011 Aug 30;10 Suppl 1:S6. doi: 10.1186/1475-2859-10-S1-S6. Epub 2011 Aug 30.


Physiological homogeneity among the endosymbionts of Riftia pachyptila and Tevnia jerichonana revealed by proteogenomics.

Gardebrecht A, Markert S, Sievert SM, Felbeck H, Thürmer A, Albrecht D, Wollherr A, Kabisch J, Le Bris N, Lehmann R, Daniel R, Liesegang H, Hecker M, Schweder T.

ISME J. 2012 Apr;6(4):766-76. doi: 10.1038/ismej.2011.137. Epub 2011 Oct 20.


ICEPmu1, an integrative conjugative element (ICE) of Pasteurella multocida: structure and transfer.

Michael GB, Kadlec K, Sweeney MT, Brzuszkiewicz E, Liesegang H, Daniel R, Murray RW, Watts JL, Schwarz S.

J Antimicrob Chemother. 2012 Jan;67(1):91-100. doi: 10.1093/jac/dkr411. Epub 2011 Oct 14.


ICEPmu1, an integrative conjugative element (ICE) of Pasteurella multocida: analysis of the regions that comprise 12 antimicrobial resistance genes.

Michael GB, Kadlec K, Sweeney MT, Brzuszkiewicz E, Liesegang H, Daniel R, Murray RW, Watts JL, Schwarz S.

J Antimicrob Chemother. 2012 Jan;67(1):84-90. doi: 10.1093/jac/dkr406. Epub 2011 Oct 14.


Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC).

Brzuszkiewicz E, Thürmer A, Schuldes J, Leimbach A, Liesegang H, Meyer FD, Boelter J, Petersen H, Gottschalk G, Daniel R.

Arch Microbiol. 2011 Dec;193(12):883-91. doi: 10.1007/s00203-011-0725-6. Epub 2011 Jun 29.


Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis.

Kalhoefer D, Thole S, Voget S, Lehmann R, Liesegang H, Wollher A, Daniel R, Simon M, Brinkhoff T.

BMC Genomics. 2011 Jun 21;12:324. doi: 10.1186/1471-2164-12-324.


More than 200 genes required for methane formation from H₂ and CO₂ and energy conservation are present in Methanothermobacter marburgensis and Methanothermobacter thermautotrophicus.

Kaster AK, Goenrich M, Seedorf H, Liesegang H, Wollherr A, Gottschalk G, Thauer RK.

Archaea. 2011;2011:973848. doi: 10.1155/2011/973848. Epub 2011 Apr 27.


Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor.

Vockenhuber MP, Sharma CM, Statt MG, Schmidt D, Xu Z, Dietrich S, Liesegang H, Mathews DH, Suess B.

RNA Biol. 2011 May-Jun;8(3):468-77. Epub 2011 May 1.


Molecular basis of macrolide, triamilide, and lincosamide resistance in Pasteurella multocida from bovine respiratory disease.

Kadlec K, Brenner Michael G, Sweeney MT, Brzuszkiewicz E, Liesegang H, Daniel R, Watts JL, Schwarz S.

Antimicrob Agents Chemother. 2011 May;55(5):2475-7. doi: 10.1128/AAC.00092-11. Epub 2011 Mar 14.


Genomic features and insights into the biology of Mycoplasma fermentans.

Rechnitzer H, Brzuszkiewicz E, Strittmatter A, Liesegang H, Lysnyansky I, Daniel R, Gottschalk G, Rottem S.

Microbiology. 2011 Mar;157(Pt 3):760-73. doi: 10.1099/mic.0.043208-0. Epub 2010 Nov 25.


Genome sequence of the polysaccharide-degrading, thermophilic anaerobe Spirochaeta thermophila DSM 6192.

Angelov A, Liebl S, Ballschmiter M, Bömeke M, Lehmann R, Liesegang H, Daniel R, Liebl W.

J Bacteriol. 2010 Dec;192(24):6492-3. doi: 10.1128/JB.01023-10. Epub 2010 Oct 8.


Host imprints on bacterial genomes--rapid, divergent evolution in individual patients.

Zdziarski J, Brzuszkiewicz E, Wullt B, Liesegang H, Biran D, Voigt B, Grönberg-Hernandez J, Ragnarsdottir B, Hecker M, Ron EZ, Daniel R, Gottschalk G, Hacker J, Svanborg C, Dobrindt U.

PLoS Pathog. 2010 Aug 26;6(8):e1001078. doi: 10.1371/journal.ppat.1001078.


Complete genome sequence of Methanothermobacter marburgensis, a methanoarchaeon model organism.

Liesegang H, Kaster AK, Wiezer A, Goenrich M, Wollherr A, Seedorf H, Gottschalk G, Thauer RK.

J Bacteriol. 2010 Nov;192(21):5850-1. doi: 10.1128/JB.00844-10. Epub 2010 Aug 27.


The genome of a Bacillus isolate causing anthrax in chimpanzees combines chromosomal properties of B. cereus with B. anthracis virulence plasmids.

Klee SR, Brzuszkiewicz EB, Nattermann H, Brüggemann H, Dupke S, Wollherr A, Franz T, Pauli G, Appel B, Liebl W, Couacy-Hymann E, Boesch C, Meyer FD, Leendertz FH, Ellerbrok H, Gottschalk G, Grunow R, Liesegang H.

PLoS One. 2010 Jul 9;5(7):e10986. doi: 10.1371/journal.pone.0010986.


Clostridium ljungdahlii represents a microbial production platform based on syngas.

Köpke M, Held C, Hujer S, Liesegang H, Wiezer A, Wollherr A, Ehrenreich A, Liebl W, Gottschalk G, Dürre P.

Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):13087-92. doi: 10.1073/pnas.1004716107. Epub 2010 Jul 2. Erratum in: Proc Natl Acad Sci U S A. 2010 Aug 24;107(34):15305.


Facilitation of direct conditional knockout of essential genes in Bacillus licheniformis DSM13 by comparative genetic analysis and manipulation of genetic competence.

Hoffmann K, Wollherr A, Larsen M, Rachinger M, Liesegang H, Ehrenreich A, Meinhardt F.

Appl Environ Microbiol. 2010 Aug;76(15):5046-57. doi: 10.1128/AEM.00660-10. Epub 2010 Jun 11.

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