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Items: 1 to 50 of 108

1.

Efficient Tandem LysC/Trypsin Digestion in Detergent Conditions.

Hakobyan A, Schneider MB, Liesack W, Glatter T.

Proteomics. 2019 Oct;19(20):e1900136. doi: 10.1002/pmic.201900136. Epub 2019 Sep 30.

PMID:
31536157
2.

Metatranscriptomics reveals a differential temperature effect on the structural and functional organization of the anaerobic food web in rice field soil.

Peng J, Wegner CE, Bei Q, Liu P, Liesack W.

Microbiome. 2018 Sep 19;6(1):169. doi: 10.1186/s40168-018-0546-9.

3.

Crude-MS Strategy for in-Depth Proteome Analysis of the Methane-Oxidizing Methylocystis sp. strain SC2.

Hakobyan A, Liesack W, Glatter T.

J Proteome Res. 2018 Sep 7;17(9):3086-3103. doi: 10.1021/acs.jproteome.8b00216. Epub 2018 Aug 8.

PMID:
30019905
4.

Unusual Genomic Traits Suggest Methylocystis bryophila S285 to Be Well Adapted for Life in Peatlands.

Han D, Dedysh SN, Liesack W.

Genome Biol Evol. 2018 Feb 1;10(2):623-628. doi: 10.1093/gbe/evy025.

5.

Metatranscriptomics reveals the hydrolytic potential of peat-inhabiting Planctomycetes.

Ivanova AA, Wegner CE, Kim Y, Liesack W, Dedysh SN.

Antonie Van Leeuwenhoek. 2018 Jun;111(6):801-809. doi: 10.1007/s10482-017-0973-9. Epub 2017 Nov 13.

PMID:
29134393
6.

Response of Methylocystis sp. Strain SC2 to Salt Stress: Physiology, Global Transcriptome, and Amino Acid Profiles.

Han D, Link H, Liesack W.

Appl Environ Microbiol. 2017 Sep 29;83(20). pii: e00866-17. doi: 10.1128/AEM.00866-17. Print 2017 Oct 15.

7.

Unexpected Dominance of Elusive Acidobacteria in Early Industrial Soft Coal Slags.

Wegner CE, Liesack W.

Front Microbiol. 2017 Jun 8;8:1023. doi: 10.3389/fmicb.2017.01023. eCollection 2017.

8.

Short-Term Exposure of Paddy Soil Microbial Communities to Salt Stress Triggers Different Transcriptional Responses of Key Taxonomic Groups.

Peng J, Wegner CE, Liesack W.

Front Microbiol. 2017 Mar 28;8:400. doi: 10.3389/fmicb.2017.00400. eCollection 2017.

9.
10.

Identification of microbial populations driving biopolymer degradation in acidic peatlands by metatranscriptomic analysis.

Ivanova AA, Wegner CE, Kim Y, Liesack W, Dedysh SN.

Mol Ecol. 2016 Oct;25(19):4818-35. doi: 10.1111/mec.13806. Epub 2016 Sep 18.

PMID:
27545292
11.

Methylovulum psychrotolerans sp. nov., a cold-adapted methanotroph from low-temperature terrestrial environments, and emended description of the genus Methylovulum.

Oshkin IY, Belova SE, Danilova OV, Miroshnikov KK, Rijpstra WI, Sinninghe Damsté JS, Liesack W, Dedysh SN.

Int J Syst Evol Microbiol. 2016 Jun;66(6):2417-23. doi: 10.1099/ijsem.0.001046. Epub 2016 Mar 31.

PMID:
27031985
12.

Differential assemblage of functional units in paddy soil microbiomes.

Kim Y, Liesack W.

PLoS One. 2015 Apr 21;10(4):e0122221. doi: 10.1371/journal.pone.0122221. eCollection 2015.

13.

Microbial community dynamics during the early stages of plant polymer breakdown in paddy soil.

Wegner CE, Liesack W.

Environ Microbiol. 2016 Sep;18(9):2825-42. doi: 10.1111/1462-2920.12815. Epub 2015 Apr 8.

PMID:
25712035
14.

Gammaproteobacterial methanotrophs dominate cold methane seeps in floodplains of West Siberian rivers.

Oshkin IY, Wegner CE, Lüke C, Glagolev MV, Filippov IV, Pimenov NV, Liesack W, Dedysh SN.

Appl Environ Microbiol. 2014 Oct;80(19):5944-54. doi: 10.1128/AEM.01539-14. Epub 2014 Jul 25.

15.

DAFGA: diversity analysis of functional gene amplicons.

Kim Y, Liesack W.

Bioinformatics. 2014 Oct;30(19):2820-1. doi: 10.1093/bioinformatics/btu394. Epub 2014 Jun 17.

PMID:
24939150
16.

Ammonium induces differential expression of methane and nitrogen metabolism-related genes in Methylocystis sp. strain SC2.

Dam B, Dam S, Kim Y, Liesack W.

Environ Microbiol. 2014 Oct;16(10):3115-27. doi: 10.1111/1462-2920.12367. Epub 2014 Feb 18.

PMID:
24373058
17.

Genome analysis coupled with physiological studies reveals a diverse nitrogen metabolism in Methylocystis sp. strain SC2.

Dam B, Dam S, Blom J, Liesack W.

PLoS One. 2013 Oct 10;8(10):e74767. doi: 10.1371/journal.pone.0074767. eCollection 2013.

18.

Pyrosequencing-based assessment of the bacteria diversity in surface and subsurface peat layers of a northern wetland, with focus on poorly studied phyla and candidate divisions.

Serkebaeva YM, Kim Y, Liesack W, Dedysh SN.

PLoS One. 2013 May 21;8(5):e63994. doi: 10.1371/journal.pone.0063994. Print 2013.

19.

Complete genome sequence of Methylocystis sp. strain SC2, an aerobic methanotroph with high-affinity methane oxidation potential.

Dam B, Dam S, Kube M, Reinhardt R, Liesack W.

J Bacteriol. 2012 Nov;194(21):6008-9. doi: 10.1128/JB.01446-12.

20.

Telmatocola sphagniphila gen. nov., sp. nov., a novel dendriform planctomycete from northern wetlands.

Kulichevskaya IS, Serkebaeva YM, Kim Y, Rijpstra WI, Damsté JS, Liesack W, Dedysh SN.

Front Microbiol. 2012 Apr 17;3:146. doi: 10.3389/fmicb.2012.00146. eCollection 2012.

21.

Complete sequence analysis of two methanotroph-specific repABC-containing plasmids from Methylocystis sp. strain SC2.

Dam B, Kube M, Dam S, Reinhardt R, Liesack W.

Appl Environ Microbiol. 2012 Jun;78(12):4373-9. doi: 10.1128/AEM.00628-12. Epub 2012 Apr 13.

22.

Linking activity, composition and seasonal dynamics of atmospheric methane oxidizers in a meadow soil.

Shrestha PM, Kammann C, Lenhart K, Dam B, Liesack W.

ISME J. 2012 Jun;6(6):1115-26. doi: 10.1038/ismej.2011.179. Epub 2011 Dec 22.

23.

Bacterial populations and environmental factors controlling cellulose degradation in an acidic Sphagnum peat.

Pankratov TA, Ivanova AO, Dedysh SN, Liesack W.

Environ Microbiol. 2011 Jul;13(7):1800-14. doi: 10.1111/j.1462-2920.2011.02491.x. Epub 2011 May 12.

PMID:
21564458
24.

Acetate utilization as a survival strategy of peat-inhabiting Methylocystis spp.

Belova SE, Baani M, Suzina NE, Bodelier PL, Liesack W, Dedysh SN.

Environ Microbiol Rep. 2011 Feb;3(1):36-46. doi: 10.1111/j.1758-2229.2010.00180.x.

PMID:
23761229
25.

Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase.

Vorobev AV, Baani M, Doronina NV, Brady AL, Liesack W, Dunfield PF, Dedysh SN.

Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2456-63. doi: 10.1099/ijs.0.028118-0. Epub 2010 Nov 19.

PMID:
21097638
26.

Extraction of mRNA from soil.

Mettel C, Kim Y, Shrestha PM, Liesack W.

Appl Environ Microbiol. 2010 Sep;76(17):5995-6000. doi: 10.1128/AEM.03047-09. Epub 2010 Jul 9.

27.

Complete genome sequence of Beijerinckia indica subsp. indica.

Tamas I, Dedysh SN, Liesack W, Stott MB, Alam M, Murrell JC, Dunfield PF.

J Bacteriol. 2010 Sep;192(17):4532-3. doi: 10.1128/JB.00656-10. Epub 2010 Jul 2.

28.

Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2.

Chen Y, Crombie A, Rahman MT, Dedysh SN, Liesack W, Stott MB, Alam M, Theisen AR, Murrell JC, Dunfield PF.

J Bacteriol. 2010 Jul;192(14):3840-1. doi: 10.1128/JB.00506-10. Epub 2010 May 14.

29.

Phylogenetic diversity and metagenomics of candidate division OP3.

Glöckner J, Kube M, Shrestha PM, Weber M, Glöckner FO, Reinhardt R, Liesack W.

Environ Microbiol. 2010 May;12(5):1218-29. doi: 10.1111/j.1462-2920.2010.02164.x. Epub 2010 Feb 11.

PMID:
20158507
30.

Methanocella arvoryzae sp. nov., a hydrogenotrophic methanogen isolated from rice field soil.

Sakai S, Conrad R, Liesack W, Imachi H.

Int J Syst Evol Microbiol. 2010 Dec;60(Pt 12):2918-23. doi: 10.1099/ijs.0.020883-0. Epub 2010 Jan 22.

PMID:
20097796
31.

Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria.

Kulichevskaya IS, Suzina NE, Liesack W, Dedysh SN.

Int J Syst Evol Microbiol. 2010 Feb;60(Pt 2):301-6. doi: 10.1099/ijs.0.013250-0. Epub 2009 Aug 3.

PMID:
19651730
32.

Transcriptional activity of paddy soil bacterial communities.

Shrestha PM, Kube M, Reinhardt R, Liesack W.

Environ Microbiol. 2009 Apr;11(4):960-70. doi: 10.1111/j.1462-2920.2008.01821.x. Epub 2008 Dec 17.

PMID:
19170728
33.

Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2.

Baani M, Liesack W.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):10203-8. doi: 10.1073/pnas.0702643105. Epub 2008 Jul 15.

34.

Substrate-induced growth and isolation of Acidobacteria from acidic Sphagnum peat.

Pankratov TA, Serkebaeva YM, Kulichevskaya IS, Liesack W, Dedysh SN.

ISME J. 2008 May;2(5):551-60. doi: 10.1038/ismej.2008.7. Epub 2008 Feb 28.

PMID:
18309356
35.

Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia.

Dunfield PF, Yuryev A, Senin P, Smirnova AV, Stott MB, Hou S, Ly B, Saw JH, Zhou Z, Ren Y, Wang J, Mountain BW, Crowe MA, Weatherby TM, Bodelier PL, Liesack W, Feng L, Wang L, Alam M.

Nature. 2007 Dec 6;450(7171):879-82. Epub 2007 Nov 14.

PMID:
18004300
36.

Mucilaginibacter paludis gen. nov., sp. nov. and Mucilaginibacter gracilis sp. nov., pectin-, xylan- and laminarin-degrading members of the family Sphingobacteriaceae from acidic Sphagnum peat bog.

Pankratov TA, Tindall BJ, Liesack W, Dedysh SN.

Int J Syst Evol Microbiol. 2007 Oct;57(Pt 10):2349-54. Erratum in: Int J Syst Evol Microbiol. 2007 Dec;57(Pt 12):2979.

PMID:
17911309
37.
38.

Methylocystis heyeri sp. nov., a novel type II methanotrophic bacterium possessing 'signature' fatty acids of type I methanotrophs.

Dedysh SN, Belova SE, Bodelier PL, Smirnova KV, Khmelenina VN, Chidthaisong A, Trotsenko YA, Liesack W, Dunfield PF.

Int J Syst Evol Microbiol. 2007 Mar;57(Pt 3):472-9.

PMID:
17329771
39.
40.

Structure and activity of bacterial community inhabiting rice roots and the rhizosphere.

Lu Y, Rosencrantz D, Liesack W, Conrad R.

Environ Microbiol. 2006 Aug;8(8):1351-60.

PMID:
16872399
41.

Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere.

Erkel C, Kube M, Reinhardt R, Liesack W.

Science. 2006 Jul 21;313(5785):370-2.

42.

Rhodoblastus sphagnicola sp. nov., a novel acidophilic purple non-sulfur bacterium from Sphagnum peat bog.

Kulichevskaya IS, Guzev VS, Gorlenko VM, Liesack W, Dedysh SN.

Int J Syst Evol Microbiol. 2006 Jun;56(Pt 6):1397-402.

PMID:
16738120
43.

Rice Cluster I methanogens, an important group of Archaea producing greenhouse gas in soil.

Conrad R, Erkel C, Liesack W.

Curr Opin Biotechnol. 2006 Jun;17(3):262-7. Epub 2006 Apr 18. Review.

PMID:
16621512
44.

Phylogenetic analysis and in situ identification of bacteria community composition in an acidic Sphagnum peat bog.

Dedysh SN, Pankratov TA, Belova SE, Kulichevskaya IS, Liesack W.

Appl Environ Microbiol. 2006 Mar;72(3):2110-7.

45.

Retrieval of first genome data for rice cluster I methanogens by a combination of cultivation and molecular techniques.

Erkel C, Kemnitz D, Kube M, Ricke P, Chin KJ, Dedysh S, Reinhardt R, Conrad R, Liesack W.

FEMS Microbiol Ecol. 2005 Jul 1;53(2):187-204. Epub 2005 Jan 21.

47.

Methylotrophic autotrophy in Beijerinckia mobilis.

Dedysh SN, Smirnova KV, Khmelenina VN, Suzina NE, Liesack W, Trotsenko YA.

J Bacteriol. 2005 Jun;187(11):3884-8.

48.

Succession of bacterial community structure and diversity in a paddy soil oxygen gradient.

Noll M, Matthies D, Frenzel P, Derakshani M, Liesack W.

Environ Microbiol. 2005 Mar;7(3):382-95.

PMID:
15683399
49.
50.

Comparative analysis of the conventional and novel pmo (particulate methane monooxygenase) operons from methylocystis strain SC2.

Ricke P, Erkel C, Kube M, Reinhardt R, Liesack W.

Appl Environ Microbiol. 2004 May;70(5):3055-63.

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