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Items: 9

1.

Comparative Analysis of Root Microbiomes of Rice Cultivars with High and Low Methane Emissions Reveals Differences in Abundance of Methanogenic Archaea and Putative Upstream Fermenters.

Liechty Z, Santos-Medellín C, Edwards J, Nguyen B, Mikhail D, Eason S, Phillips G, Sundaresan V.

mSystems. 2020 Feb 18;5(1). pii: e00897-19. doi: 10.1128/mSystems.00897-19.

2.

Soil domestication by rice cultivation results in plant-soil feedback through shifts in soil microbiota.

Edwards J, Santos-Medellín C, Nguyen B, Kilmer J, Liechty Z, Veliz E, Ni J, Phillips G, Sundaresan V.

Genome Biol. 2019 Oct 24;20(1):221. doi: 10.1186/s13059-019-1825-x.

3.

Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice.

Edwards JA, Santos-Medellín CM, Liechty ZS, Nguyen B, Lurie E, Eason S, Phillips G, Sundaresan V.

PLoS Biol. 2018 Feb 23;16(2):e2003862. doi: 10.1371/journal.pbio.2003862. eCollection 2018 Feb.

4.

Drought Stress Results in a Compartment-Specific Restructuring of the Rice Root-Associated Microbiomes.

Santos-Medellín C, Edwards J, Liechty Z, Nguyen B, Sundaresan V.

mBio. 2017 Jul 18;8(4). pii: e00764-17. doi: 10.1128/mBio.00764-17.

5.

Correction: DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton.

Page JT, Liechty ZS, Alexander RH, Clemons K, Hulse-Kemp AM, Ashrafi H, Van Deynze A, Stelly DM, Udall JA.

PLoS Genet. 2016 Jul 22;12(7):e1006206. doi: 10.1371/journal.pgen.1006206. eCollection 2016 Jul.

6.

DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton.

Page JT, Liechty ZS, Alexander RH, Clemons K, Hulse-Kemp AM, Ashrafi H, Van Deynze A, Stelly DM, Udall JA.

PLoS Genet. 2016 May 11;12(5):e1006012. doi: 10.1371/journal.pgen.1006012. eCollection 2016 May. Erratum in: PLoS Genet. 2016 Jul;12(7):e1006206.

7.

BamBam: genome sequence analysis tools for biologists.

Page JT, Liechty ZS, Huynh MD, Udall JA.

BMC Res Notes. 2014 Nov 24;7:829. doi: 10.1186/1756-0500-7-829.

8.

Genome-wide analysis of the omega-3 fatty acid desaturase gene family in Gossypium.

Yurchenko OP, Park S, Ilut DC, Inmon JJ, Millhollon JC, Liechty Z, Page JT, Jenks MA, Chapman KD, Udall JA, Gore MA, Dyer JM.

BMC Plant Biol. 2014 Nov 18;14:312. doi: 10.1186/s12870-014-0312-5.

9.

Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing.

Page JT, Huynh MD, Liechty ZS, Grupp K, Stelly D, Hulse AM, Ashrafi H, Van Deynze A, Wendel JF, Udall JA.

G3 (Bethesda). 2013 Oct 3;3(10):1809-18. doi: 10.1534/g3.113.007229.

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