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Amendments: Author Correction: A catalog of the mouse gut metagenome.

Xiao L, Feng Q, Liang S, Sonne SB, Xia Z, Qiu X, Li X, Long H, Zhang J, Zhang D, Liu C, Fang Z, Chou J, Glanville J, Hao Q, Kotowska D, Colding C, Licht TR, Wu D, Yu J, Sung JJY, Liang Q, Li J, Jia H, Lan Z, Tremaroli V, Dworzynski P, Nielsen HB, Bäckhed F, Doré J, Le Chatelier E, Ehrlich SD, Lin JC, Arumugam M, Wang J, Madsen L, Kristiansen K.

Nat Biotechnol. 2019 Jan 3;37(1):102. doi: 10.1038/nbt0119-102a. No abstract available.


VEGF expands erythropoiesis via hypoxia-independent induction of erythropoietin in noncanonical perivascular stromal cells.

Greenwald AC, Licht T, Kumar S, Oladipupo SS, Iyer S, Grunewald M, Keshet E.

J Exp Med. 2019 Jan 7;216(1):215-230. doi: 10.1084/jem.20180752. Epub 2018 Dec 13.


Unique role for dentate gyrus microglia in neuroblast survival and in VEGF-induced activation.

Kreisel T, Wolf B, Keshet E, Licht T.

Glia. 2018 Nov 19. doi: 10.1002/glia.23505. [Epub ahead of print]


A low-gluten diet induces changes in the intestinal microbiome of healthy Danish adults.

Hansen LBS, Roager HM, Søndertoft NB, Gøbel RJ, Kristensen M, Vallès-Colomer M, Vieira-Silva S, Ibrügger S, Lind MV, Mærkedahl RB, Bahl MI, Madsen ML, Havelund J, Falony G, Tetens I, Nielsen T, Allin KH, Frandsen HL, Hartmann B, Holst JJ, Sparholt MH, Holck J, Blennow A, Moll JM, Meyer AS, Hoppe C, Poulsen JH, Carvalho V, Sagnelli D, Dalgaard MD, Christensen AF, Lydolph MC, Ross AB, Villas-Bôas S, Brix S, Sicheritz-Pontén T, Buschard K, Linneberg A, Rumessen JJ, Ekstrøm CT, Ritz C, Kristiansen K, Nielsen HB, Vestergaard H, Færgeman NJ, Raes J, Frøkiær H, Hansen T, Lauritzen L, Gupta R, Licht TR, Pedersen O.

Nat Commun. 2018 Nov 13;9(1):4630. doi: 10.1038/s41467-018-07019-x.


Antibiotic treatment of rat dams affects bacterial colonization and causes decreased weight gain in pups.

Tulstrup MV, Roager HM, Thaarup IC, Frandsen HL, Frøkiær H, Licht TR, Bahl MI.

Commun Biol. 2018 Sep 13;1:145. doi: 10.1038/s42003-018-0140-5. eCollection 2018.


Microbial tryptophan catabolites in health and disease.

Roager HM, Licht TR.

Nat Commun. 2018 Aug 17;9(1):3294. doi: 10.1038/s41467-018-05470-4. Review.


Differential bacterial capture and transport preferences facilitate co-growth on dietary xylan in the human gut.

Leth ML, Ejby M, Workman C, Ewald DA, Pedersen SS, Sternberg C, Bahl MI, Licht TR, Aachmann FL, Westereng B, Abou Hachem M.

Nat Microbiol. 2018 May;3(5):570-580. doi: 10.1038/s41564-018-0132-8. Epub 2018 Apr 2.


Pre-treatment microbial Prevotella-to-Bacteroides ratio, determines body fat loss success during a 6-month randomized controlled diet intervention.

Hjorth MF, Roager HM, Larsen TM, Poulsen SK, Licht TR, Bahl MI, Zohar Y, Astrup A.

Int J Obes (Lond). 2018 Feb;42(2):284. doi: 10.1038/ijo.2018.1. Epub 2018 Feb 6.


Aberrant intestinal microbiota in individuals with prediabetes.

Allin KH, Tremaroli V, Caesar R, Jensen BAH, Damgaard MTF, Bahl MI, Licht TR, Hansen TH, Nielsen T, Dantoft TM, Linneberg A, Jørgensen T, Vestergaard H, Kristiansen K, Franks PW; IMI-DIRECT consortium, Hansen T, Bäckhed F, Pedersen O.

Diabetologia. 2018 Apr;61(4):810-820. doi: 10.1007/s00125-018-4550-1. Epub 2018 Jan 29.


Faecalibacterium Gut Colonization Is Accelerated by Presence of Older Siblings.

Laursen MF, Laursen RP, Larnkjær A, Mølgaard C, Michaelsen KF, Frøkiær H, Bahl MI, Licht TR.

mSphere. 2017 Nov 29;2(6). pii: e00448-17. doi: 10.1128/mSphere.00448-17. eCollection 2017 Nov-Dec.


Whole grain-rich diet reduces body weight and systemic low-grade inflammation without inducing major changes of the gut microbiome: a randomised cross-over trial.

Roager HM, Vogt JK, Kristensen M, Hansen LBS, Ibrügger S, Mærkedahl RB, Bahl MI, Lind MV, Nielsen RL, Frøkiær H, Gøbel RJ, Landberg R, Ross AB, Brix S, Holck J, Meyer AS, Sparholt MH, Christensen AF, Carvalho V, Hartmann B, Holst JJ, Rumessen JJ, Linneberg A, Sicheritz-Pontén T, Dalgaard MD, Blennow A, Frandsen HL, Villas-Bôas S, Kristiansen K, Vestergaard H, Hansen T, Ekstrøm CT, Ritz C, Nielsen HB, Pedersen OB, Gupta R, Lauritzen L, Licht TR.

Gut. 2019 Jan;68(1):83-93. doi: 10.1136/gutjnl-2017-314786. Epub 2017 Nov 1.


Glyphosate has limited short-term effects on commensal bacterial community composition in the gut environment due to sufficient aromatic amino acid levels.

Nielsen LN, Roager HM, Casas ME, Frandsen HL, Gosewinkel U, Bester K, Licht TR, Hendriksen NB, Bahl MI.

Environ Pollut. 2018 Feb;233:364-376. doi: 10.1016/j.envpol.2017.10.016. Epub 2017 Nov 5.


Improvement of quality of life and psychological distress after inpatient cancer rehabilitation : Results of a longitudinal observational study.

Riedl D, Giesinger JM, Wintner LM, Loth FL, Rumpold G, Greil R, Nickels A, Licht T, Holzner B.

Wien Klin Wochenschr. 2017 Oct;129(19-20):692-701. doi: 10.1007/s00508-017-1266-z. Epub 2017 Sep 15.


Pre-treatment microbial Prevotella-to-Bacteroides ratio, determines body fat loss success during a 6-month randomized controlled diet intervention.

Hjorth MF, Roager HM, Larsen TM, Poulsen SK, Licht TR, Bahl MI, Zohar Y, Astrup A.

Int J Obes (Lond). 2018 Mar;42(3):580-583. doi: 10.1038/ijo.2017.220. Epub 2017 Sep 8. Erratum in: Int J Obes (Lond). 2018 Feb 06;:.


S1PR3 Signaling Drives Bacterial Killing and Is Required for Survival in Bacterial Sepsis.

Hou J, Chen Q, Wu X, Zhao D, Reuveni H, Licht T, Xu M, Hu H, Hoeft A, Ben-Sasson SA, Shu Q, Fang X.

Am J Respir Crit Care Med. 2017 Dec 15;196(12):1559-1570. doi: 10.1164/rccm.201701-0241OC.


Administration of two probiotic strains during early childhood does not affect the endogenous gut microbiota composition despite probiotic proliferation.

Laursen MF, Laursen RP, Larnkjær A, Michaelsen KF, Bahl MI, Licht TR.

BMC Microbiol. 2017 Aug 17;17(1):175. doi: 10.1186/s12866-017-1090-7.


Fatty acid composition and phospholipid types used in infant formulas modifies the establishment of human gut bacteria in germ-free mice.

Nejrup RG, Licht TR, Hellgren LI.

Sci Rep. 2017 Jun 21;7(1):3975. doi: 10.1038/s41598-017-04298-0.


High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice.

Xiao L, Sonne SB, Feng Q, Chen N, Xia Z, Li X, Fang Z, Zhang D, Fjære E, Midtbø LK, Derrien M, Hugenholtz F, Tang L, Li J, Zhang J, Liu C, Hao Q, Vogel UB, Mortensen A, Kleerebezem M, Licht TR, Yang H, Wang J, Li Y, Arumugam M, Wang J, Madsen L, Kristiansen K.

Microbiome. 2017 Apr 8;5(1):43. doi: 10.1186/s40168-017-0258-6.


First Foods and Gut Microbes.

Laursen MF, Bahl MI, Michaelsen KF, Licht TR.

Front Microbiol. 2017 Mar 6;8:356. doi: 10.3389/fmicb.2017.00356. eCollection 2017.


Effects of Gliadin consumption on the Intestinal Microbiota and Metabolic Homeostasis in Mice Fed a High-fat Diet.

Zhang L, Andersen D, Roager HM, Bahl MI, Hansen CH, Danneskiold-Samsøe NB, Kristiansen K, Radulescu ID, Sina C, Frandsen HL, Hansen AK, Brix S, Hellgren LI, Licht TR.

Sci Rep. 2017 Mar 16;7:44613. doi: 10.1038/srep44613.


Microbiota composition of simultaneously colonized mice housed under either a gnotobiotic isolator or individually ventilated cage regime.

Lundberg R, Bahl MI, Licht TR, Toft MF, Hansen AK.

Sci Rep. 2017 Feb 7;7:42245. doi: 10.1038/srep42245.


Environmental spread of microbes impacts the development of metabolic phenotypes in mice transplanted with microbial communities from humans.

Zhang L, Bahl MI, Roager HM, Fonvig CE, Hellgren LI, Frandsen HL, Pedersen O, Holm JC, Hansen T, Licht TR.

ISME J. 2017 Mar;11(3):676-690. doi: 10.1038/ismej.2016.151. Epub 2016 Nov 18.


VEGF preconditioning leads to stem cell remodeling and attenuates age-related decay of adult hippocampal neurogenesis.

Licht T, Rothe G, Kreisel T, Wolf B, Benny O, Rooney AG, Ffrench-Constant C, Enikolopov G, Keshet E.

Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7828-E7836. Epub 2016 Nov 14.


Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut.

Roager HM, Hansen LB, Bahl MI, Frandsen HL, Carvalho V, Gøbel RJ, Dalgaard MD, Plichta DR, Sparholt MH, Vestergaard H, Hansen T, Sicheritz-Pontén T, Nielsen HB, Pedersen O, Lauritzen L, Kristensen M, Gupta R, Licht TR.

Nat Microbiol. 2016 Jun 27;1(9):16093. doi: 10.1038/nmicrobiol.2016.93.


Infant Gut Microbiota Development Is Driven by Transition to Family Foods Independent of Maternal Obesity.

Laursen MF, Andersen LB, Michaelsen KF, Mølgaard C, Trolle E, Bahl MI, Licht TR.

mSphere. 2016 Feb 10;1(1). pii: e00069-15. doi: 10.1128/mSphere.00069-15. eCollection 2016 Jan-Feb.


Associations between common intestinal parasites and bacteria in humans as revealed by qPCR.

O'Brien Andersen L, Karim AB, Roager HM, Vigsnæs LK, Krogfelt KA, Licht TR, Stensvold CR.

Eur J Clin Microbiol Infect Dis. 2016 Sep;35(9):1427-31. doi: 10.1007/s10096-016-2680-2. Epub 2016 May 26.


Effect of a long-term high-protein diet on survival, obesity development, and gut microbiota in mice.

Kiilerich P, Myrmel LS, Fjære E, Hao Q, Hugenholtz F, Sonne SB, Derrien M, Pedersen LM, Petersen RK, Mortensen A, Licht TR, Rømer MU, Vogel UB, Waagbø LJ, Giallourou N, Feng Q, Xiao L, Liu C, Liaset B, Kleerebezem M, Wang J, Madsen L, Kristiansen K.

Am J Physiol Endocrinol Metab. 2016 Jun 1;310(11):E886-99. doi: 10.1152/ajpendo.00363.2015. Epub 2016 Mar 29.


Cancer rehabilitation in Austria--aspects of Physical Medicine and Rehabilitation.

Maehr B, Keilani M, Wiltschke C, Hassler M, Licht T, Marosi C, Huetterer E, Cenik F, Crevenna R.

Wien Med Wochenschr. 2016 Feb;166(1-2):39-43. doi: 10.1007/s10354-015-0414-1. Epub 2016 Jan 12. Review.


Antibiotic Treatment Affects Intestinal Permeability and Gut Microbial Composition in Wistar Rats Dependent on Antibiotic Class.

Tulstrup MV, Christensen EG, Carvalho V, Linninge C, Ahrné S, Højberg O, Licht TR, Bahl MI.

PLoS One. 2015 Dec 21;10(12):e0144854. doi: 10.1371/journal.pone.0144854. eCollection 2015.


Effect of Antibiotics on Gut Microbiota, Gut Hormones and Glucose Metabolism.

Mikkelsen KH, Frost M, Bahl MI, Licht TR, Jensen US, Rosenberg J, Pedersen O, Hansen T, Rehfeld JF, Holst JJ, Vilsbøll T, Knop FK.

PLoS One. 2015 Nov 12;10(11):e0142352. doi: 10.1371/journal.pone.0142352. eCollection 2015.


Neonatal microbial colonization in mice promotes prolonged dominance of CD11b(+)Gr-1(+) cells and accelerated establishment of the CD4(+) T cell population in the spleen.

Kristensen MB, Metzdorff SB, Bergström A, Damlund DS, Fink LN, Licht TR, Frøkiær H.

Immun Inflamm Dis. 2015 Sep;3(3):309-20. doi: 10.1002/iid3.70. Epub 2015 Jun 18.


A catalog of the mouse gut metagenome.

Xiao L, Feng Q, Liang S, Sonne SB, Xia Z, Qiu X, Li X, Long H, Zhang J, Zhang D, Liu C, Fang Z, Chou J, Glanville J, Hao Q, Kotowska D, Colding C, Licht TR, Wu D, Yu J, Sung JJ, Liang Q, Li J, Jia H, Lan Z, Tremaroli V, Dworzynski P, Nielsen HB, Bäckhed F, Doré J, Le Chatelier E, Ehrlich SD, Lin JC, Arumugam M, Wang J, Madsen L, Kristiansen K.

Nat Biotechnol. 2015 Oct;33(10):1103-8. doi: 10.1038/nbt.3353. Epub 2015 Sep 28.


Having older siblings is associated with gut microbiota development during early childhood.

Laursen MF, Zachariassen G, Bahl MI, Bergström A, Høst A, Michaelsen KF, Licht TR.

BMC Microbiol. 2015 Aug 1;15:154. doi: 10.1186/s12866-015-0477-6.


The vascular niche in adult neurogenesis.

Licht T, Keshet E.

Mech Dev. 2015 Nov;138 Pt 1:56-62. doi: 10.1016/j.mod.2015.06.001. Epub 2015 Jun 20. Review.


Lipid hydrolysis products affect the composition of infant gut microbial communities in vitro.

Nejrup RG, Bahl MI, Vigsnæs LK, Heerup C, Licht TR, Hellgren LI.

Br J Nutr. 2015 Jul 14;114(1):63-74. doi: 10.1017/S0007114515000811. Epub 2015 May 20.


Vessel maturation schedule determines vulnerability to neuronal injuries of prematurity.

Licht T, Dor-Wollman T, Ben-Zvi A, Rothe G, Keshet E.

J Clin Invest. 2015 Mar 2;125(3):1319-28. doi: 10.1172/JCI79401. Epub 2015 Feb 17.


TL1A regulates TCRγδ+ intraepithelial lymphocytes and gut microbial composition.

Tougaard P, Skov S, Pedersen AE, Krych L, Nielsen DS, Bahl MI, Christensen EG, Licht TR, Poulsen SS, Metzdorff SB, Hansen AK, Hansen CH.

Eur J Immunol. 2015 Mar;45(3):865-75. doi: 10.1002/eji.201444528. Epub 2014 Dec 23.


RBM24 is a major regulator of muscle-specific alternative splicing.

Yang J, Hung LH, Licht T, Kostin S, Looso M, Khrameeva E, Bindereif A, Schneider A, Braun T.

Dev Cell. 2014 Oct 13;31(1):87-99. doi: 10.1016/j.devcel.2014.08.025.


Dietary xylo-oligosaccharide stimulates intestinal bifidobacteria and lactobacilli but has limited effect on intestinal integrity in rats.

Christensen EG, Licht TR, Leser TD, Bahl MI.

BMC Res Notes. 2014 Sep 19;7:660. doi: 10.1186/1756-0500-7-660.


Transfer of gut microbiota from lean and obese mice to antibiotic-treated mice.

Ellekilde M, Selfjord E, Larsen CS, Jakesevic M, Rune I, Tranberg B, Vogensen FK, Nielsen DS, Bahl MI, Licht TR, Hansen AK, Hansen CH.

Sci Rep. 2014 Aug 1;4:5922. doi: 10.1038/srep05922.


Combination of antiangiogenic therapy using the mTOR-inhibitor everolimus and low-dose chemotherapy for locally advanced and/or metastatic pancreatic cancer: a dose-finding study.

Joka M, Boeck S, Zech CJ, Seufferlein T, Wichert Gv, Licht T, Krause A, Jauch KW, Heinemann V, Bruns CJ.

Anticancer Drugs. 2014 Oct;25(9):1095-101. doi: 10.1097/CAD.0000000000000146.


Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis.

Wesolowska-Andersen A, Bahl MI, Carvalho V, Kristiansen K, Sicheritz-Pontén T, Gupta R, Licht TR.

Microbiome. 2014 Jun 5;2:19. doi: 10.1186/2049-2618-2-19. eCollection 2014.


A single exposure to a sublethal pediocin concentration initiates a resistance-associated temporal cell envelope and general stress response in Listeria monocytogenes.

Laursen MF, Bahl MI, Licht TR, Gram L, Knudsen GM.

Environ Microbiol. 2015 Apr;17(4):1134-51. doi: 10.1111/1462-2920.12534. Epub 2014 Jul 8.


A combined metabolomic and phylogenetic study reveals putatively prebiotic effects of high molecular weight arabino-oligosaccharides when assessed by in vitro fermentation in bacterial communities derived from humans.

Sulek K, Vigsnaes LK, Schmidt LR, Holck J, Frandsen HL, Smedsgaard J, Skov TH, Meyer AS, Licht TR.

Anaerobe. 2014 Aug;28:68-77. doi: 10.1016/j.anaerobe.2014.05.007. Epub 2014 Jun 4.


Lactobacillus acidophilus NCFM affects vitamin E acetate metabolism and intestinal bile acid signature in monocolonized mice.

Roager HM, Sulek K, Skov K, Frandsen HL, Smedsgaard J, Wilcks A, Skov TH, Villas-Boas SG, Licht TR.

Gut Microbes. 2014 May-Jun;5(3):296-303. doi: 10.4161/gmic.28806. Epub 2014 Apr 9.


Establishment of intestinal microbiota during early life: a longitudinal, explorative study of a large cohort of Danish infants.

Bergström A, Skov TH, Bahl MI, Roager HM, Christensen LB, Ejlerskov KT, Mølgaard C, Michaelsen KF, Licht TR.

Appl Environ Microbiol. 2014 May;80(9):2889-900. doi: 10.1128/AEM.00342-14. Epub 2014 Feb 28.


Dynamic microglial alterations underlie stress-induced depressive-like behavior and suppressed neurogenesis.

Kreisel T, Frank MG, Licht T, Reshef R, Ben-Menachem-Zidon O, Baratta MV, Maier SF, Yirmiya R.

Mol Psychiatry. 2014 Jun;19(6):699-709. doi: 10.1038/mp.2013.155. Epub 2013 Dec 17.


Microbial enterotypes, inferred by the prevotella-to-bacteroides ratio, remained stable during a 6-month randomized controlled diet intervention with the new nordic diet.

Roager HM, Licht TR, Poulsen SK, Larsen TM, Bahl MI.

Appl Environ Microbiol. 2014 Feb;80(3):1142-9. doi: 10.1128/AEM.03549-13. Epub 2013 Dec 2.


Bifidogenic effect of whole-grain wheat during a 12-week energy-restricted dietary intervention in postmenopausal women.

Christensen EG, Licht TR, Kristensen M, Bahl MI.

Eur J Clin Nutr. 2013 Dec;67(12):1316-21. doi: 10.1038/ejcn.2013.207. Epub 2013 Oct 23.


Xylo-oligosaccharides and inulin affect genotoxicity and bacterial populations differently in a human colonic simulator challenged with soy protein.

Christophersen CT, Petersen A, Licht TR, Conlon MA.

Nutrients. 2013 Sep 23;5(9):3740-56. doi: 10.3390/nu5093740.

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