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Items: 44

1.

Assessing the Influence of Irrigation Flows on Clearance of Calculi Fragments During Percutaneous Nephrolithotomy: A Numerical and Physical Model Study.

Paster A, Shlain S, Barghouthy Y, Liberzon A, Aviram G, Sofer M.

Urology. 2019 Feb;124:46-51. doi: 10.1016/j.urology.2018.10.007. Epub 2018 Oct 30.

PMID:
30385257
2.

Generalization of Turbulent Pair Dispersion to Large Initial Separations.

Shnapp R, Liberzon A; International Collaboration for Turbulence Research.

Phys Rev Lett. 2018 Jun 15;120(24):244502. doi: 10.1103/PhysRevLett.120.244502.

PMID:
29956980
3.

GeNets: a unified web platform for network-based genomic analyses.

Li T, Kim A, Rosenbluh J, Horn H, Greenfeld L, An D, Zimmer A, Liberzon A, Bistline J, Natoli T, Li Y, Tsherniak A, Narayan R, Subramanian A, Liefeld T, Wong B, Thompson D, Calvo S, Carr S, Boehm J, Jaffe J, Mesirov J, Hacohen N, Regev A, Lage K.

Nat Methods. 2018 Jul;15(7):543-546. doi: 10.1038/s41592-018-0039-6. Epub 2018 Jun 18.

PMID:
29915188
4.

Moth-inspired navigation algorithm in a turbulent odor plume from a pulsating source.

Liberzon A, Harrington K, Daniel N, Gurka R, Harari A, Zilman G.

PLoS One. 2018 Jun 13;13(6):e0198422. doi: 10.1371/journal.pone.0198422. eCollection 2018.

5.

Design and Analysis of Offshore Macroalgae Biorefineries.

Golberg A, Liberzon A, Vitkin E, Yakhini Z.

Methods Mol Biol. 2018 Mar 15. doi: 10.1007/7651_2018_127. [Epub ahead of print]

PMID:
29542056
6.

Exergy efficiency of light conversion into biomass in the macroalga Ulva sp. (Chlorophyta) cultivated under the pulsed light in a photobioreactor.

Habiby O, Nahor O, Israel A, Liberzon A, Golberg A.

Biotechnol Bioeng. 2018 Jul;115(7):1694-1704. doi: 10.1002/bit.26588. Epub 2018 Apr 10.

PMID:
29537063
7.

A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles.

Subramanian A, Narayan R, Corsello SM, Peck DD, Natoli TE, Lu X, Gould J, Davis JF, Tubelli AA, Asiedu JK, Lahr DL, Hirschman JE, Liu Z, Donahue M, Julian B, Khan M, Wadden D, Smith IC, Lam D, Liberzon A, Toder C, Bagul M, Orzechowski M, Enache OM, Piccioni F, Johnson SA, Lyons NJ, Berger AH, Shamji AF, Brooks AN, Vrcic A, Flynn C, Rosains J, Takeda DY, Hu R, Davison D, Lamb J, Ardlie K, Hogstrom L, Greenside P, Gray NS, Clemons PA, Silver S, Wu X, Zhao WN, Read-Button W, Wu X, Haggarty SJ, Ronco LV, Boehm JS, Schreiber SL, Doench JG, Bittker JA, Root DE, Wong B, Golub TR.

Cell. 2017 Nov 30;171(6):1437-1452.e17. doi: 10.1016/j.cell.2017.10.049.

8.

A numerical study of the hemodynamic effect of the aortic valve on coronary flow.

Wald S, Liberzon A, Avrahami I.

Biomech Model Mechanobiol. 2018 Apr;17(2):319-338. doi: 10.1007/s10237-017-0962-y. Epub 2017 Sep 19.

PMID:
28929246
9.

Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States.

Kim JW, Abudayyeh OO, Yeerna H, Yeang CH, Stewart M, Jenkins RW, Kitajima S, Konieczkowski DJ, Medetgul-Ernar K, Cavazos T, Mah C, Ting S, Van Allen EM, Cohen O, Mcdermott J, Damato E, Aguirre AJ, Liang J, Liberzon A, Alexe G, Doench J, Ghandi M, Vazquez F, Weir BA, Tsherniak A, Subramanian A, Meneses-Cime K, Park J, Clemons P, Garraway LA, Thomas D, Boehm JS, Barbie DA, Hahn WC, Mesirov JP, Tamayo P.

Cell Syst. 2017 Aug 23;5(2):105-118.e9. doi: 10.1016/j.cels.2017.08.002.

10.

Hydrodynamic regime determines the feeding success of larval fish through the modulation of strike kinematics.

China V, Levy L, Liberzon A, Elmaliach T, Holzman R.

Proc Biol Sci. 2017 Apr 26;284(1853). pii: 20170235. doi: 10.1098/rspb.2017.0235.

11.

Pulsatility Index as a Diagnostic Parameter of Reciprocating Wall Shear Stress Parameters in Physiological Pulsating Waveforms.

Avrahami I, Kersh D, Liberzon A.

PLoS One. 2016 Nov 28;11(11):e0166426. doi: 10.1371/journal.pone.0166426. eCollection 2016.

12.

Characterizing genomic alterations in cancer by complementary functional associations.

Kim JW, Botvinnik OB, Abudayyeh O, Birger C, Rosenbluh J, Shrestha Y, Abazeed ME, Hammerman PS, DiCara D, Konieczkowski DJ, Johannessen CM, Liberzon A, Alizad-Rahvar AR, Alexe G, Aguirre A, Ghandi M, Greulich H, Vazquez F, Weir BA, Van Allen EM, Tsherniak A, Shao DD, Zack TI, Noble M, Getz G, Beroukhim R, Garraway LA, Ardakani M, Romualdi C, Sales G, Barbie DA, Boehm JS, Hahn WC, Mesirov JP, Tamayo P.

Nat Biotechnol. 2016 May;34(5):539-46. doi: 10.1038/nbt.3527. Epub 2016 Apr 18.

13.

Automated detection of feeding strikes by larval fish using continuous high-speed digital video: a novel method to extract quantitative data from fast, sparse kinematic events.

Shamur E, Zilka M, Hassner T, China V, Liberzon A, Holzman R.

J Exp Biol. 2016 Jun 1;219(Pt 11):1608-17. doi: 10.1242/jeb.133751. Epub 2016 Mar 18.

14.

Three-dimensional Particle Tracking Velocimetry for Turbulence Applications: Case of a Jet Flow.

Kim JT, Kim D, Liberzon A, Chamorro LP.

J Vis Exp. 2016 Feb 27;(108):53745. doi: 10.3791/53745.

15.

Compendium of Immune Signatures Identifies Conserved and Species-Specific Biology in Response to Inflammation.

Godec J, Tan Y, Liberzon A, Tamayo P, Bhattacharya S, Butte AJ, Mesirov JP, Haining WN.

Immunity. 2016 Jan 19;44(1):194-206. doi: 10.1016/j.immuni.2015.12.006. Epub 2016 Jan 12.

16.

The Molecular Signatures Database (MSigDB) hallmark gene set collection.

Liberzon A, Birger C, Thorvaldsdóttir H, Ghandi M, Mesirov JP, Tamayo P.

Cell Syst. 2015 Dec 23;1(6):417-425.

17.

Breakup of Finite-Size Colloidal Aggregates in Turbulent Flow Investigated by Three-Dimensional (3D) Particle Tracking Velocimetry.

Saha D, Babler MU, Holzner M, Soos M, Lüthi B, Liberzon A, Kinzelbach W.

Langmuir. 2016 Jan 12;32(1):55-65. doi: 10.1021/acs.langmuir.5b03804. Epub 2015 Dec 21.

PMID:
26646289
18.

Background oriented schlieren in a density stratified fluid.

Verso L, Liberzon A.

Rev Sci Instrum. 2015 Oct;86(10):103705. doi: 10.1063/1.4934576.

PMID:
26520964
19.

On the Estimation of Time Dependent Lift of a European Starling (Sturnus vulgaris) during Flapping Flight.

Stalnov O, Ben-Gida H, Kirchhefer AJ, Guglielmo CG, Kopp GA, Liberzon A, Gurka R.

PLoS One. 2015 Sep 22;10(9):e0134582. doi: 10.1371/journal.pone.0134582. eCollection 2015.

20.

Statistical conservation law in two- and three-dimensional turbulent flows.

Frishman A, Boffetta G, De Lillo F, Liberzon A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Mar;91(3):033018. Epub 2015 Mar 26.

21.

Experimental characterization of breakage rate of colloidal aggregates in axisymmetric extensional flow.

Saha D, Soos M, Lüthi B, Holzner M, Liberzon A, Babler MU, Kinzelbach W.

Langmuir. 2014 Dec 9;30(48):14385-95. doi: 10.1021/la502686b. Epub 2014 Nov 24.

PMID:
25375364
22.

An in vitro investigation of the influence of stenosis severity on the flow in the ascending aorta.

Gülan U, Lüthi B, Holzner M, Liberzon A, Tsinober A, Kinzelbach W.

Med Eng Phys. 2014 Sep;36(9):1147-55. doi: 10.1016/j.medengphy.2014.06.018. Epub 2014 Jul 25.

PMID:
25066583
23.

Experimental investigation of the influence of the aortic stiffness on hemodynamics in the ascending aorta.

Gülan U, Lüthi B, Holzner M, Liberzon A, Tsinober A, Kinzelbach W.

IEEE J Biomed Health Inform. 2014 Nov;18(6):1775-80. doi: 10.1109/JBHI.2014.2322934. Epub 2014 May 9.

PMID:
24833608
24.

A description of the Molecular Signatures Database (MSigDB) Web site.

Liberzon A.

Methods Mol Biol. 2014;1150:153-60. doi: 10.1007/978-1-4939-0512-6_9.

PMID:
24743996
25.

Unbiased transcriptome signature of in vivo cell proliferation reveals pro- and antiproliferative gene networks.

Cohen M, Vecsler M, Liberzon A, Noach M, Zlotorynski E, Tzur A.

Cell Cycle. 2013 Sep 15;12(18):2992-3000. doi: 10.4161/cc.26030. Epub 2013 Aug 13.

26.

The hydrodynamics of contact of a marine larva, Bugula neritina, with a cylinder.

Zilman G, Novak J, Liberzon A, Perkol-Finkel S, Benayahu Y.

J Exp Biol. 2013 Aug 1;216(Pt 15):2789-97. doi: 10.1242/jeb.083352. Epub 2013 Apr 25.

27.

The limitations of simple gene set enrichment analysis assuming gene independence.

Tamayo P, Steinhardt G, Liberzon A, Mesirov JP.

Stat Methods Med Res. 2016 Feb;25(1):472-87. doi: 10.1177/0962280212460441. Epub 2012 Oct 14.

28.

AraPath: a knowledgebase for pathway analysis in Arabidopsis.

Lai L, Liberzon A, Hennessey J, Jiang G, Qi J, Mesirov JP, Ge SX.

Bioinformatics. 2012 Sep 1;28(17):2291-2. doi: 10.1093/bioinformatics/bts421. Epub 2012 Jul 3.

29.

Molecular signatures database (MSigDB) 3.0.

Liberzon A, Subramanian A, Pinchback R, Thorvaldsdóttir H, Tamayo P, Mesirov JP.

Bioinformatics. 2011 Jun 15;27(12):1739-40. doi: 10.1093/bioinformatics/btr260. Epub 2011 May 5.

30.

Combining clinical, pathology, and gene expression data to predict recurrence of hepatocellular carcinoma.

Villanueva A, Hoshida Y, Battiston C, Tovar V, Sia D, Alsinet C, Cornella H, Liberzon A, Kobayashi M, Kumada H, Thung SN, Bruix J, Newell P, April C, Fan JB, Roayaie S, Mazzaferro V, Schwartz ME, Llovet JM.

Gastroenterology. 2011 May;140(5):1501-12.e2. doi: 10.1053/j.gastro.2011.02.006. Epub 2011 Feb 12.

31.

Using GenePattern for gene expression analysis.

Kuehn H, Liberzon A, Reich M, Mesirov JP.

Curr Protoc Bioinformatics. 2008 Jun;Chapter 7:Unit 7.12. doi: 10.1002/0471250953.bi0712s22. Review.

32.

Network-based analysis of affected biological processes in type 2 diabetes models.

Liu M, Liberzon A, Kong SW, Lai WR, Park PJ, Kohane IS, Kasif S.

PLoS Genet. 2007 Jun;3(6):e96.

33.

Stretching and tilting of material lines in turbulence: the effect of strain and vorticity.

Guala M, Liberzon A, Lüthi B, Kinzelbach W, Tsinober A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Mar;73(3 Pt 2):036303. Epub 2006 Mar 2.

PMID:
16605647
34.

Role of intrinsic DNA binding specificity in defining target genes of the mammalian transcription factor PDX1.

Liberzon A, Ridner G, Walker MD.

Nucleic Acids Res. 2004 Jan 2;32(1):54-64. Print 2004.

35.

Preliminary investigations of ultrasound induced acoustic streaming using particle image velocimetry.

Frenkel V, Gurka R, Liberzon A, Shavit U, Kimmel E.

Ultrasonics. 2001 Apr;39(3):153-6.

PMID:
11349995
36.

DENS (differential extension with nucleotide subsets): application to the sequencing of human genomic DNA and cDNA.

Zevin-Sonkin D, Liberzon A, Chochikyan A, Hovhannisyan H, Lvovsky L, Ulanovsky L.

DNA Seq. 1999;10(4-5):245-54.

PMID:
10727081
37.

Interdependence between DNA template secondary structure and priming efficiencies of short primers.

Lvovsky L, Ioshikhes I, Raja MC, Zevin-Sonkin D, Sobolev IA, Liberzon A, Shwartzburd J, Ulanovsky LE.

Nucleic Acids Res. 1998 Dec 1;26(23):5525-32.

38.

Association of yeast SIN1 with the tetratrico peptide repeats of CDC23.

Shpungin S, Liberzon A, Bangio H, Yona E, Katcoff DJ.

Proc Natl Acad Sci U S A. 1996 Aug 6;93(16):8274-7.

39.

Association of yeast SAP1, a novel member of the 'AAA' ATPase family of proteins, with the chromatin protein SIN1.

Liberzon A, Shpungin S, Bangio H, Yona E, Katcoff DJ.

FEBS Lett. 1996 Jun 10;388(1):5-10.

40.

[A microprocessor monitoring system for control of the status of the fetus].

Berezkin GS, Liberzon AP, Palatnik ES.

Med Tekh. 1989 May-Jun;(3):39-41. Russian.

PMID:
2770498
41.

[Rheospirographic method of measuring external respiratory parameters in stomatological patients].

Pokrovskiĭ MM, Liberzon AP, Khalavka MN, Sherman AM, Ivanov LP.

Stomatologiia (Mosk). 1979 Jul-Aug;58(4):78-9. Russian. No abstract available.

PMID:
384609
42.

[Multichannel recorder of slowly changing physiological parameters].

Liberzon AP, Sherman AM.

Nov Med Tekh. 1977;(4):43-4. Russian. No abstract available.

PMID:
616908
43.

[Elaboration of a device for monitor control of respiratory frequency and regularity].

Liberzon AP, Pasichik TV, Sherman AM.

Nov Med Tekh. 1977;(4):39-43. Russian. No abstract available.

PMID:
616907
44.

[Medical basis for the development of a device for registering the respiratory movements of the chest cavity].

Sherman DM, Liberzon AP, Pokrovskiĭ MM, Sherman AM.

Nov Med Tekh. 1977;(4):32-6. Russian. No abstract available.

PMID:
616905

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