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Items: 1 to 50 of 104

1.

Green function of correlated genes in a minimal mechanical model of protein evolution.

Dutta S, Eckmann JP, Libchaber A, Tlusty T.

Proc Natl Acad Sci U S A. 2018 May 15;115(20):E4559-E4568. doi: 10.1073/pnas.1716215115. Epub 2018 Apr 30.

2.

Fundamental amino acid mass distributions and entropy costs in proteomes.

Lehmann J, Libchaber A, Greenbaum BD.

J Theor Biol. 2016 Dec 7;410:119-124. doi: 10.1016/j.jtbi.2016.08.011. Epub 2016 Aug 18.

PMID:
27544420
3.

Biophysical basis for convergent evolution of two veil-forming microbes.

Petroff AP, Pasulka AL, Soplop N, Wu XL, Libchaber A.

R Soc Open Sci. 2015 Nov 11;2(11):150437. doi: 10.1098/rsos.150437. eCollection 2015 Nov.

4.

Fast-moving bacteria self-organize into active two-dimensional crystals of rotating cells.

Petroff AP, Wu XL, Libchaber A.

Phys Rev Lett. 2015 Apr 17;114(15):158102. Epub 2015 Apr 17.

PMID:
25933342
5.

On growth and form of Bacillus subtilis biofilms.

Dervaux J, Magniez JC, Libchaber A.

Interface Focus. 2014 Dec 6;4(6):20130051. doi: 10.1098/rsfs.2013.0051.

6.

Using first passage statistics to extract environmentally dependent amino acid correlations.

Greenbaum BD, Kumar P, Libchaber A.

PLoS One. 2014 Jul 7;9(7):e101665. doi: 10.1371/journal.pone.0101665. eCollection 2014. Erratum in: PLoS One. 2014;9(11):e113943.

7.

Hydrodynamics and collective behavior of the tethered bacterium Thiovulum majus.

Petroff A, Libchaber A.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):E537-45. doi: 10.1073/pnas.1322092111. Epub 2014 Jan 23. Erratum in: Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):E1767.

8.

Pressure and temperature dependence of growth and morphology of Escherichia coli: experiments and stochastic model.

Kumar P, Libchaber A.

Biophys J. 2013 Aug 6;105(3):783-93. doi: 10.1016/j.bpj.2013.06.029.

9.

Effects of long DNA folding and small RNA stem-loop in thermophoresis.

Maeda YT, Tlusty T, Libchaber A.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17972-7. doi: 10.1073/pnas.1215764109. Epub 2012 Oct 15.

10.

Modeling and experimental methods to probe the link between global transcription and spatial organization of chromosomes.

Iyer KV, Maharana S, Gupta S, Libchaber A, Tlusty T, Shivashankar GV.

PLoS One. 2012;7(10):e46628. doi: 10.1371/journal.pone.0046628. Epub 2012 Oct 1.

11.

Universal protein fluctuations in populations of microorganisms.

Salman H, Brenner N, Tung CK, Elyahu N, Stolovicki E, Moore L, Libchaber A, Braun E.

Phys Rev Lett. 2012 Jun 8;108(23):238105. Epub 2012 Jun 6.

PMID:
23003996
12.

Kinetics of bulge bases in small RNAs and the effect of pressure on it.

Kumar P, Lehmann J, Libchaber A.

PLoS One. 2012;7(8):e42052. doi: 10.1371/journal.pone.0042052. Epub 2012 Aug 20.

13.

Assembly of MreB filaments on liposome membranes: a synthetic biology approach.

Maeda YT, Nakadai T, Shin J, Uryu K, Noireaux V, Libchaber A.

ACS Synth Biol. 2012 Feb 17;1(2):53-9. doi: 10.1021/sb200003v. Epub 2011 Dec 7.

PMID:
23651045
14.

Effects of pressure and temperature on the binding of RecA protein to single-stranded DNA.

Merrin J, Kumar P, Libchaber A.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):19913-8. doi: 10.1073/pnas.1112646108. Epub 2011 Nov 28.

15.

Effects of population density and chemical environment on the behavior of Escherichia coli in shallow temperature gradients.

Demir M, Douarche C, Yoney A, Libchaber A, Salman H.

Phys Biol. 2011 Dec;8(6):063001. doi: 10.1088/1478-3975/8/6/063001. Epub 2011 Nov 4.

PMID:
22056767
16.

Thermal separation: interplay between the Soret effect and entropic force gradient.

Maeda YT, Buguin A, Libchaber A.

Phys Rev Lett. 2011 Jul 15;107(3):038301. Epub 2011 Jul 11.

PMID:
21838407
17.

Insights into the micromechanical properties of the metaphase spindle.

Shimamoto Y, Maeda YT, Ishiwata S, Libchaber AJ, Kapoor TM.

Cell. 2011 Jun 24;145(7):1062-74. doi: 10.1016/j.cell.2011.05.038.

18.

Development of an artificial cell, from self-organization to computation and self-reproduction.

Noireaux V, Maeda YT, Libchaber A.

Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3473-80. doi: 10.1073/pnas.1017075108. Epub 2011 Feb 11.

19.

E. Coli and oxygen: a motility transition.

Douarche C, Buguin A, Salman H, Libchaber A.

Phys Rev Lett. 2009 May 15;102(19):198101. Epub 2009 May 12.

PMID:
19518998
20.

Emergence of a code in the polymerization of amino acids along RNA templates.

Lehmann J, Cibils M, Libchaber A.

PLoS One. 2009 Jun 3;4(6):e5773. doi: 10.1371/journal.pone.0005773.

21.

Degeneracy of the genetic code and stability of the base pair at the second position of the anticodon.

Lehmann J, Libchaber A.

RNA. 2008 Jul;14(7):1264-9. doi: 10.1261/rna.1029808. Epub 2008 May 21.

22.

High-Q microsphere biosensor - analysis for adsorption of rodlike bacteria.

Ren HC, Vollmer F, Arnold S, Libchaber A.

Opt Express. 2007 Dec 10;15(25):17410-23.

PMID:
19551035
23.

Computer-based photon-counting lock-in for phase detection at the shot-noise limit.

Braun D, Libchaber A.

Opt Lett. 2002 Aug 15;27(16):1418-20.

PMID:
18026465
24.

A concentration-dependent switch in the bacterial response to temperature.

Salman H, Libchaber A.

Nat Cell Biol. 2007 Sep;9(9):1098-100. Epub 2007 Aug 12.

PMID:
17694049
25.

Efficiency of a self-aminoacylating ribozyme: effect of the length and base-composition of its 3' extension.

Lehmann J, Reichel A, Buguin A, Libchaber A.

RNA. 2007 Aug;13(8):1191-7. Epub 2007 Jun 7.

26.

Solitary modes of bacterial culture in a temperature gradient.

Salman H, Zilman A, Loverdo C, Jeffroy M, Libchaber A.

Phys Rev Lett. 2006 Sep 15;97(11):118101. Epub 2006 Sep 11.

PMID:
17025931
27.

Examining how the spatial organization of chromatin signals influences metaphase spindle assembly.

Gaetz J, Gueroui Z, Libchaber A, Kapoor TM.

Nat Cell Biol. 2006 Sep;8(9):924-32. Epub 2006 Aug 6.

PMID:
16892054
28.

Some aspects of E. coli promoter evolution observed in a molecular evolution experiment.

Liu S, Libchaber A.

J Mol Evol. 2006 May;62(5):536-50. Epub 2006 Apr 11.

PMID:
16612545
29.

Toward an artificial cell based on gene expression in vesicles.

Noireaux V, Bar-Ziv R, Godefroy J, Salman H, Libchaber A.

Phys Biol. 2005 Sep 15;2(3):P1-8.

PMID:
16224117
30.

Thermal force approach to molecular evolution.

Braun D, Libchaber A.

Phys Biol. 2004 Jun;1(1-2):P1-8. Review.

PMID:
16204812
31.

High-fidelity DNA sensing by protein binding fluctuations.

Tlusty T, Bar-Ziv R, Libchaber A.

Phys Rev Lett. 2004 Dec 17;93(25):258103. Epub 2004 Dec 14.

PMID:
15697950
32.

A vesicle bioreactor as a step toward an artificial cell assembly.

Noireaux V, Libchaber A.

Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17669-74. Epub 2004 Dec 10.

33.

Single-molecule measurements of gold-quenched quantum dots.

Gueroui Z, Libchaber A.

Phys Rev Lett. 2004 Oct 15;93(16):166108. Epub 2004 Oct 15.

PMID:
15525013
34.

Discerning aggregation in homogeneous ensembles: a general description of photon counting spectroscopy in diffusing systems.

Ren HC, Goddard NL, Altan-Bonnet G, Libchaber A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 May;69(5 Pt 1):051916. Epub 2004 May 27.

PMID:
15244856
35.

Production and assay of a transcription activator CRP in coupled in vitro transcription and translation.

Liu S, Libchaber A.

Biotechniques. 2004 Apr;36(4):596-8, 600. No abstract available.

36.

Exponential DNA replication by laminar convection.

Braun D, Goddard NL, Libchaber A.

Phys Rev Lett. 2003 Oct 10;91(15):158103. Epub 2003 Oct 9.

PMID:
14611502
37.

Principles of cell-free genetic circuit assembly.

Noireaux V, Bar-Ziv R, Libchaber A.

Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12672-7. Epub 2003 Oct 14.

38.

Multiplexed DNA quantification by spectroscopic shift of two microsphere cavities.

Vollmer F, Arnold S, Braun D, Teraoka I, Libchaber A.

Biophys J. 2003 Sep;85(3):1974-9.

39.

Bubble dynamics in double-stranded DNA.

Altan-Bonnet G, Libchaber A, Krichevsky O.

Phys Rev Lett. 2003 Apr 4;90(13):138101. Epub 2003 Apr 1.

PMID:
12689326
40.

In vivo imaging of quantum dots encapsulated in phospholipid micelles.

Dubertret B, Skourides P, Norris DJ, Noireaux V, Brivanlou AH, Libchaber A.

Science. 2002 Nov 29;298(5599):1759-62.

41.

Trapping of DNA by thermophoretic depletion and convection.

Braun D, Libchaber A.

Phys Rev Lett. 2002 Oct 28;89(18):188103. Epub 2002 Oct 14.

PMID:
12398641
42.

Protein-DNA computation by stochastic assembly cascade.

Bar-Ziv R, Tlusty T, Libchaber A.

Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11589-92. Epub 2002 Aug 19.

43.

Signal and noise in bridging PCR.

Liu S, Thaler DS, Libchaber A.

BMC Biotechnol. 2002 Jul 18;2:13.

44.

Effects of DNA sequence and structure on binding of RecA to single-stranded DNA.

Bar-Ziv R, Libchaber A.

Proc Natl Acad Sci U S A. 2001 Jul 31;98(16):9068-73. Epub 2001 Jul 24.

45.

Dynamics of DNA-protein interaction deduced from in vitro DNA evolution.

Dubertret B, Liu S, Ouyang Q, Libchaber A.

Phys Rev Lett. 2001 Jun 25;86(26 Pt 1):6022-5.

PMID:
11415419
46.

Single-mismatch detection using gold-quenched fluorescent oligonucleotides.

Dubertret B, Calame M, Libchaber AJ.

Nat Biotechnol. 2001 Apr;19(4):365-70. Erratum in: Nat Biotechnol 2001 Jul;19(7):680-1.

PMID:
11283596
47.

Wu and Libchaber reply on dispersion of passive particles in a concentrated suspension of swimming bacteria.

Wu X, Libchaber A.

Phys Rev Lett. 2001 Jan 15;86(3):557. No abstract available.

PMID:
11177880
48.

Flexible filaments in a flowing soap film as a model for one-dimensional flags in a two-dimensional wind.

Zhang J, Childress S, Libchaber A, Shelley M.

Nature. 2000 Dec 14;408(6814):835-9.

PMID:
11130717
49.

Method for linking a synthesized protein to its mRNA-DNA complex.

Liu S, Shivashankar GV, Sano T, Libchaber A.

Biotechniques. 2000 Oct;29(4):792, 794, 796, 798.

50.

Particle diffusion in a quasi-two-dimensional bacterial bath.

Wu XL, Libchaber A.

Phys Rev Lett. 2000 Mar 27;84(13):3017-20.

PMID:
11019000

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