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Items: 1 to 50 of 130


Development of 20 chloroplast microsatellite primers in wuyao (Lindera aggregata, Lauraceae).

Ye JW, Li DZ.

Appl Plant Sci. 2019 Jul 26;7(8):e01213. doi: 10.1002/aps3.1213. eCollection 2019 Aug.


Plastid phylogenomics and biogeographic analysis support a trans-Tethyan origin and rapid early radiation of Cornales in the Mid-Cretaceous.

Fu CN, Mo ZQ, Yang JB, Ge XJ, Li DZ, Xiang QJ, Gao LM.

Mol Phylogenet Evol. 2019 Aug 21;140:106601. doi: 10.1016/j.ympev.2019.106601. [Epub ahead of print]


Greater than the sum of the parts: how the species composition in different forest strata influence ecosystem function.

Luo YH, Cadotte MW, Burgess KS, Liu J, Tan SL, Zou JY, Xu K, Li DZ, Gao LM.

Ecol Lett. 2019 Sep;22(9):1449-1461. doi: 10.1111/ele.13330. Epub 2019 Jul 2.


Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos.

Guo ZH, Ma PF, Yang GQ, Hu JY, Liu YL, Xia EH, Zhong MC, Zhao L, Sun GL, Xu YX, Zhao YJ, Zhang YC, Zhang YX, Zhang XM, Zhou MY, Guo Y, Guo C, Liu JX, Ye XY, Chen YM, Yang Y, Han B, Lin CS, Lu Y, Li DZ.

Mol Plant. 2019 May 27. pii: S1674-2052(19)30174-1. doi: 10.1016/j.molp.2019.05.009. [Epub ahead of print]


PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.

Qu XJ, Moore MJ, Li DZ, Yi TS.

Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019.


Using nuclear loci and allelic variation to disentangle the phylogeny of Phyllostachys (Poaceae, Bambusoideae).

Zhang LN, Ma PF, Zhang YX, Zeng CX, Zhao L, Li DZ.

Mol Phylogenet Evol. 2019 Aug;137:222-235. doi: 10.1016/j.ympev.2019.05.011. Epub 2019 May 18.


Phylogenomic analysis reveals multiple evolutionary origins of selfing from outcrossing in a lineage of heterostylous plants.

Zhong L, Barrett SCH, Wang XJ, Wu ZK, Sun HY, Li DZ, Wang H, Zhou W.

New Phytol. 2019 May 11. doi: 10.1111/nph.15905. [Epub ahead of print]


Origin of angiosperms and the puzzle of the Jurassic gap.

Li HT, Yi TS, Gao LM, Ma PF, Zhang T, Yang JB, Gitzendanner MA, Fritsch PW, Cai J, Luo Y, Wang H, van der Bank M, Zhang SD, Wang QF, Wang J, Zhang ZR, Fu CN, Yang J, Hollingsworth PM, Chase MW, Soltis DE, Soltis PS, Li DZ.

Nat Plants. 2019 May;5(5):461-470. doi: 10.1038/s41477-019-0421-0. Epub 2019 May 6.


Upward elevation and northwest range shifts for alpine Meconopsis species in the Himalaya-Hengduan Mountains region.

He X, Burgess KS, Yang XF, Ahrends A, Gao LM, Li DZ.

Ecol Evol. 2019 Mar 11;9(7):4055-4064. doi: 10.1002/ece3.5034. eCollection 2019 Apr.


Distributional responses to climate change for alpine species of Cyananthus and Primula endemic to the Himalaya-Hengduan Mountains.

He X, Burgess KS, Gao LM, Li DZ.

Plant Divers. 2019 Feb 7;41(1):26-32. doi: 10.1016/j.pld.2019.01.004. eCollection 2019 Feb.


Prevalence of isomeric plastomes and effectiveness of plastome super-barcodes in yews (Taxus) worldwide.

Fu CN, Wu CS, Ye LJ, Mo ZQ, Liu J, Chang YW, Li DZ, Chaw SM, Gao LM.

Sci Rep. 2019 Feb 26;9(1):2773. doi: 10.1038/s41598-019-39161-x.


Specificity and seasonal prevalence of anther smut disease Microbotryum on sympatric Himalayan Silene species.

Tang H, Hood ME, Ren ZX, Li HD, Zhao YH, Wolfe LM, Li DZ, Wang H.

J Evol Biol. 2019 May;32(5):451-462. doi: 10.1111/jeb.13427. Epub 2019 Mar 4.


Plastid phylogenomic insights into the evolution of Caryophyllales.

Yao G, Jin JJ, Li HT, Yang JB, Mandala VS, Croley M, Mostow R, Douglas NA, Chase MW, Christenhusz MJM, Soltis DE, Soltis PS, Smith SA, Brockington SF, Moore MJ, Yi TS, Li DZ.

Mol Phylogenet Evol. 2019 May;134:74-86. doi: 10.1016/j.ympev.2018.12.023. Epub 2019 Feb 5.


Evolutionary constraints on disparity of ericaceous pollen grains.

Yu Y, Schneider H, Li DZ, Wang H.

Ann Bot. 2019 May 20;123(5):805-813. doi: 10.1093/aob/mcy212.


Comparative transcriptomics identifies patterns of selection in roses.

Li S, Zhong M, Dong X, Jiang X, Xu Y, Sun Y, Cheng F, Li DZ, Tang K, Wang S, Dai S, Hu JY.

BMC Plant Biol. 2018 Dec 22;18(1):371. doi: 10.1186/s12870-018-1585-x.


Protect Third Pole's fragile ecosystem.

Liu J, Milne RI, Cadotte MW, Wu ZY, Provan J, Zhu GF, Gao LM, Li DZ.

Science. 2018 Dec 21;362(6421):1368. doi: 10.1126/science.aaw0443. No abstract available.


A new genus of temperate woody bamboos (Poaceae, Bambusoideae, Arundinarieae) from a limestone montane area of China.

Zhang YX, Ma PF, Li DZ.

PhytoKeys. 2018 Oct 12;(109):67-76. doi: 10.3897/phytokeys.109.27566. eCollection 2018.


Transcriptome analysis reveals crucial genes involved in the biosynthesis of nervonic acid in woody Malania oleifera oilseeds.

Yang T, Yu Q, Xu W, Li DZ, Chen F, Liu A.

BMC Plant Biol. 2018 Oct 19;18(1):247. doi: 10.1186/s12870-018-1463-6.


Incomplete reproductive isolation between Rhododendron taxa enables hybrid formation and persistence.

Yan LJ, Burgess KS, Zheng W, Tao ZB, Li DZ, Gao LM.

J Integr Plant Biol. 2019 Apr;61(4):433-448. doi: 10.1111/jipb.12718. Epub 2018 Nov 21.


Testing Darwin's transoceanic dispersal hypothesis for the inland nettle family (Urticaceae).

Wu ZY, Liu J, Provan J, Wang H, Chen CJ, Cadotte MW, Luo YH, Amorim BS, Li DZ, Milne RI.

Ecol Lett. 2018 Oct;21(10):1515-1529. doi: 10.1111/ele.13132. Epub 2018 Aug 21.


DNA barcoding herbaceous and woody plant species at a subalpine forest dynamics plot in Southwest China.

Tan SL, Luo YH, Hollingsworth PM, Burgess KS, Xu K, Li DZ, Gao LM.

Ecol Evol. 2018 Jun 25;8(14):7195-7205. doi: 10.1002/ece3.4254. eCollection 2018 Jul.


Phylogenetic approaches resolve taxonomical confusion in Pedicularis (Orobanchaceae): Reinstatement of Pedicularis delavayi and discovering a new species Pedicularis milliana.

Yu WB, Wang H, Liu ML, Grabovskaya-Borodina AE, Li DZ.

PLoS One. 2018 Jul 25;13(7):e0200372. doi: 10.1371/journal.pone.0200372. eCollection 2018.


Does reproductive isolation reflect the segregation of color forms in Spiranthes sinensis (Pers.) Ames complex (Orchidaceae) in the Chinese Himalayas?

Tao ZB, Ren ZX, Bernhardt P, Liang H, Li HD, Zhao YH, Wang H, Li DZ.

Ecol Evol. 2018 Apr 27;8(11):5455-5469. doi: 10.1002/ece3.4067. eCollection 2018 Jun.


Genome skimming herbarium specimens for DNA barcoding and phylogenomics.

Zeng CX, Hollingsworth PM, Yang J, He ZS, Zhang ZR, Li DZ, Yang JB.

Plant Methods. 2018 Jun 5;14:43. doi: 10.1186/s13007-018-0300-0. eCollection 2018.


Integrating a comprehensive DNA barcode reference library with a global map of yews (Taxus L.) for forensic identification.

Liu J, Milne RI, Möller M, Zhu GF, Ye LJ, Luo YH, Yang JB, Wambulwa MC, Wang CN, Li DZ, Gao LM.

Mol Ecol Resour. 2018 May 22. doi: 10.1111/1755-0998.12903. [Epub ahead of print]


Differential expression networks and inheritance patterns of long non-coding RNAs in castor bean seeds.

Xu W, Yang T, Wang B, Han B, Zhou H, Wang Y, Li DZ, Liu A.

Plant J. 2018 Jul;95(2):324-340. doi: 10.1111/tpj.13953. Epub 2018 May 31.


The Hemiparasitic Plant Phtheirospermum (Orobanchaceae) Is Polyphyletic and Contains Cryptic Species in the Hengduan Mountains of Southwest China.

Yu WB, Randle CP, Lu L, Wang H, Yang JB, dePamphilis CW, Corlett RT, Li DZ.

Front Plant Sci. 2018 Feb 9;9:142. doi: 10.3389/fpls.2018.00142. eCollection 2018.


Plastid Genome Evolution in the Early-Diverging Legume Subfamily Cercidoideae (Fabaceae).

Wang YH, Wicke S, Wang H, Jin JJ, Chen SY, Zhang SD, Li DZ, Yi TS.

Front Plant Sci. 2018 Feb 8;9:138. doi: 10.3389/fpls.2018.00138. eCollection 2018.


Functional trade-offs and the phylogenetic dispersion of seed traits in a biodiversity hotspot of the Mountains of Southwest China.

Chen K, Burgess KS, Yang XY, Luo YH, Gao LM, Li DZ.

Ecol Evol. 2018 Jan 25;8(4):2218-2230. doi: 10.1002/ece3.3805. eCollection 2018 Feb.


Domestication Origin and Breeding History of the Tea Plant (Camellia sinensis) in China and India Based on Nuclear Microsatellites and cpDNA Sequence Data.

Meegahakumbura MK, Wambulwa MC, Li MM, Thapa KK, Sun YS, Möller M, Xu JC, Yang JB, Liu J, Liu BY, Li DZ, Gao LM.

Front Plant Sci. 2018 Jan 25;8:2270. doi: 10.3389/fpls.2017.02270. eCollection 2017.


Negative correlation between rates of molecular evolution and flowering cycles in temperate woody bamboos revealed by plastid phylogenomics.

Ma PF, Vorontsova MS, Nanjarisoa OP, Razanatsoa J, Guo ZH, Haevermans T, Li DZ.

BMC Plant Biol. 2017 Dec 21;17(1):260. doi: 10.1186/s12870-017-1199-8.


Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution.

Fu CN, Li HT, Milne R, Zhang T, Ma PF, Yang J, Li DZ, Gao LM.

BMC Genomics. 2017 Dec 8;18(1):956. doi: 10.1186/s12864-017-4319-9.


Insights into the historical assembly of East Asian subtropical evergreen broadleaved forests revealed by the temporal history of the tea family.

Yu XQ, Gao LM, Soltis DE, Soltis PS, Yang JB, Fang L, Yang SX, Li DZ.

New Phytol. 2017 Aug;215(3):1235-1248. doi: 10.1111/nph.14683.


Breeding system and pollination of two closely related bamboo species.

Chen LN, Cui YZ, Wong KM, Li DZ, Yang HQ.

AoB Plants. 2017 May 29;9(3):plx021. doi: 10.1093/aobpla/plx021. eCollection 2017 May.


Multiple origins and a narrow genepool characterise the African tea germplasm: concordant patterns revealed by nuclear and plastid DNA markers.

Wambulwa MC, Meegahakumbura MK, Kamunya S, Muchugi A, Möller M, Liu J, Xu JC, Li DZ, Gao LM.

Sci Rep. 2017 Jun 22;7(1):4053. doi: 10.1038/s41598-017-04228-0.


Comparative chloroplast genomes of eleven Schima (Theaceae) species: Insights into DNA barcoding and phylogeny.

Yu XQ, Drew BT, Yang JB, Gao LM, Li DZ.

PLoS One. 2017 Jun 2;12(6):e0178026. doi: 10.1371/journal.pone.0178026. eCollection 2017.


Asymmetrical natural hybridization varies among hybrid swarms between two diploid Rhododendron species.

Yan LJ, Burgess KS, Milne R, Fu CN, Li DZ, Gao LM.

Ann Bot. 2017 Jul 1;120(1):51-61. doi: 10.1093/aob/mcx039.


Plastid phylogenomics and adaptive evolution of Gaultheria series Trichophyllae (Ericaceae), a clade from sky islands of the Himalaya-Hengduan Mountains.

Zhang MY, Fritsch PW, Ma PF, Wang H, Lu L, Li DZ.

Mol Phylogenet Evol. 2017 May;110:7-18. doi: 10.1016/j.ympev.2017.01.015. Epub 2017 Feb 16.


Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics.

Zhang SD, Jin JJ, Chen SY, Chase MW, Soltis DE, Li HT, Yang JB, Li DZ, Yi TS.

New Phytol. 2017 May;214(3):1355-1367. doi: 10.1111/nph.14461. Epub 2017 Feb 10.


Phylogeographic insights on the evolutionary breakdown of heterostyly.

Zhou W, Barrett SC, Li HD, Wu ZK, Wang XJ, Wang H, Li DZ.

New Phytol. 2017 May;214(3):1368-1380. doi: 10.1111/nph.14453. Epub 2017 Feb 8.


Phylogeny and biogeography of the amphi-Pacific genus Aphananthe.

Yang MQ, Li DZ, Wen J, Yi TS.

PLoS One. 2017 Feb 7;12(2):e0171405. doi: 10.1371/journal.pone.0171405. eCollection 2017.


Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae).

Qu XJ, Jin JJ, Chaw SM, Li DZ, Yi TS.

Sci Rep. 2017 Jan 25;7:41005. doi: 10.1038/srep41005.


Insights into the Genetic Relationships and Breeding Patterns of the African Tea Germplasm Based on nSSR Markers and cpDNA Sequences.

Wambulwa MC, Meegahakumbura MK, Kamunya S, Muchugi A, Möller M, Liu J, Xu JC, Ranjitkar S, Li DZ, Gao LM.

Front Plant Sci. 2016 Aug 30;7:1244. doi: 10.3389/fpls.2016.01244. eCollection 2016.


Applying DNA Barcodes to Identify Closely Related Species of Ferns: A Case Study of the Chinese Adiantum (Pteridaceae).

Wang FH, Lu JM, Wen J, Ebihara A, Li DZ.

PLoS One. 2016 Sep 7;11(9):e0160611. doi: 10.1371/journal.pone.0160611. eCollection 2016.


Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants.

Yang GQ, Chen YM, Wang JP, Guo C, Zhao L, Wang XY, Guo Y, Li L, Li DZ, Guo ZH.

Plant Methods. 2016 Aug 4;12:39. doi: 10.1186/s13007-016-0139-1. eCollection 2016.


Telling plant species apart with DNA: from barcodes to genomes.

Hollingsworth PM, Li DZ, van der Bank M, Twyford AD.

Philos Trans R Soc Lond B Biol Sci. 2016 Sep 5;371(1702). pii: 20150338. doi: 10.1098/rstb.2015.0338. Review.


Lineage-Specific Reductions of Plastid Genomes in an Orchid Tribe with Partially and Fully Mycoheterotrophic Species.

Feng YL, Wicke S, Li JW, Han Y, Lin CS, Li DZ, Zhou TT, Huang WC, Huang LQ, Jin XH.

Genome Biol Evol. 2016 Aug 3;8(7):2164-75. doi: 10.1093/gbe/evw144.


Phylogenomic analyses of large-scale nuclear genes provide new insights into the evolutionary relationships within the rosids.

Zhao L, Li X, Zhang N, Zhang SD, Yi TS, Ma H, Guo ZH, Li DZ.

Mol Phylogenet Evol. 2016 Dec;105:166-176. doi: 10.1016/j.ympev.2016.06.007. Epub 2016 Jun 28.


Floral traits influence pollen vectors' choices in higher elevation communities in the Himalaya-Hengduan Mountains.

Zhao YH, Ren ZX, Lázaro A, Wang H, Bernhardt P, Li HD, Li DZ.

BMC Ecol. 2016 May 24;16:26. doi: 10.1186/s12898-016-0080-1.

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