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Items: 21

1.

B-Vitamin Sharing Promotes Stability of Gut Microbial Communities.

Sharma V, Rodionov DA, Leyn SA, Tran D, Iablokov SN, Ding H, Peterson DA, Osterman AL, Peterson SN.

Front Microbiol. 2019 Jul 2;10:1485. doi: 10.3389/fmicb.2019.01485. eCollection 2019.

2.

A sparse covarying unit that describes healthy and impaired human gut microbiota development.

Raman AS, Gehrig JL, Venkatesh S, Chang HW, Hibberd MC, Subramanian S, Kang G, Bessong PO, Lima AAM, Kosek MN, Petri WA Jr, Rodionov DA, Arzamasov AA, Leyn SA, Osterman AL, Huq S, Mostafa I, Islam M, Mahfuz M, Haque R, Ahmed T, Barratt MJ, Gordon JI.

Science. 2019 Jul 12;365(6449). pii: eaau4735. doi: 10.1126/science.aau4735.

3.

Effects of microbiota-directed foods in gnotobiotic animals and undernourished children.

Gehrig JL, Venkatesh S, Chang HW, Hibberd MC, Kung VL, Cheng J, Chen RY, Subramanian S, Cowardin CA, Meier MF, O'Donnell D, Talcott M, Spears LD, Semenkovich CF, Henrissat B, Giannone RJ, Hettich RL, Ilkayeva O, Muehlbauer M, Newgard CB, Sawyer C, Head RD, Rodionov DA, Arzamasov AA, Leyn SA, Osterman AL, Hossain MI, Islam M, Choudhury N, Sarker SA, Huq S, Mahmud I, Mostafa I, Mahfuz M, Barratt MJ, Ahmed T, Gordon JI.

Science. 2019 Jul 12;365(6449). pii: eaau4732. doi: 10.1126/science.aau4732.

4.

Micronutrient Requirements and Sharing Capabilities of the Human Gut Microbiome.

Rodionov DA, Arzamasov AA, Khoroshkin MS, Iablokov SN, Leyn SA, Peterson SN, Novichkov PS, Osterman AL.

Front Microbiol. 2019 Jun 12;10:1316. doi: 10.3389/fmicb.2019.01316. eCollection 2019.

5.

Draft Genome Sequences of Two Vibrio parahaemolyticus Strains Associated with Gastroenteritis after Raw Seafood Ingestion in Colorado.

Trinh SA, Leyn SA, Rodionov ID, Godzik A, Satchell KJF.

Genome Announc. 2018 Jan 18;6(3). pii: e01387-17. doi: 10.1128/genomeA.01387-17.

6.

Genomic Reconstruction of Carbohydrate Utilization Capacities in Microbial-Mat Derived Consortia.

Leyn SA, Maezato Y, Romine MF, Rodionov DA.

Front Microbiol. 2017 Jul 13;8:1304. doi: 10.3389/fmicb.2017.01304. eCollection 2017.

7.

Comparative genomics and evolution of transcriptional regulons in Proteobacteria.

Leyn SA, Suvorova IA, Kazakov AE, Ravcheev DA, Stepanova VV, Novichkov PS, Rodionov DA.

Microb Genom. 2016 Jul 11;2(7):e000061. doi: 10.1099/mgen.0.000061. eCollection 2016 Jul.

8.

A Novel Transcriptional Regulator Related to Thiamine Phosphate Synthase Controls Thiamine Metabolism Genes in Archaea.

Rodionov DA, Leyn SA, Li X, Rodionova IA.

J Bacteriol. 2017 Jan 30;199(4). pii: e00743-16. doi: 10.1128/JB.00743-16. Print 2017 Feb 15.

9.

Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children.

Blanton LV, Charbonneau MR, Salih T, Barratt MJ, Venkatesh S, Ilkaveya O, Subramanian S, Manary MJ, Trehan I, Jorgensen JM, Fan YM, Henrissat B, Leyn SA, Rodionov DA, Osterman AL, Maleta KM, Newgard CB, Ashorn P, Dewey KG, Gordon JI.

Science. 2016 Feb 19;351(6275). pii: aad3311. doi: 10.1126/science.aad3311.

10.

Transcriptional Regulation of Carbohydrate Utilization Pathways in the Bifidobacterium Genus.

Khoroshkin MS, Leyn SA, Van Sinderen D, Rodionov DA.

Front Microbiol. 2016 Feb 9;7:120. doi: 10.3389/fmicb.2016.00120. eCollection 2016.

11.

Novel Transcriptional Regulons for Autotrophic Cycle Genes in Crenarchaeota.

Leyn SA, Rodionova IA, Li X, Rodionov DA.

J Bacteriol. 2015 Jul;197(14):2383-91. doi: 10.1128/JB.00249-15. Epub 2015 May 4.

12.

Comparative genomics of transcriptional regulation of methionine metabolism in Proteobacteria.

Leyn SA, Suvorova IA, Kholina TD, Sherstneva SS, Novichkov PS, Gelfand MS, Rodionov DA.

PLoS One. 2014 Nov 20;9(11):e113714. doi: 10.1371/journal.pone.0113714. eCollection 2014.

13.

Comparative genomics of DtxR family regulons for metal homeostasis in Archaea.

Leyn SA, Rodionov DA.

J Bacteriol. 2015 Feb;197(3):451-8. doi: 10.1128/JB.02386-14. Epub 2014 Nov 17.

14.

RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria.

Novichkov PS, Kazakov AE, Ravcheev DA, Leyn SA, Kovaleva GY, Sutormin RA, Kazanov MD, Riehl W, Arkin AP, Dubchak I, Rodionov DA.

BMC Genomics. 2013 Nov 1;14:745. doi: 10.1186/1471-2164-14-745.

15.

Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria.

Sun EI, Leyn SA, Kazanov MD, Saier MH Jr, Novichkov PS, Rodionov DA.

BMC Genomics. 2013 Sep 2;14:597. doi: 10.1186/1471-2164-14-597.

16.

Genomic reconstruction of the transcriptional regulatory network in Bacillus subtilis.

Leyn SA, Kazanov MD, Sernova NV, Ermakova EO, Novichkov PS, Rodionov DA.

J Bacteriol. 2013 Jun;195(11):2463-73. doi: 10.1128/JB.00140-13. Epub 2013 Mar 15.

17.

Novel inositol catabolic pathway in Thermotoga maritima.

Rodionova IA, Leyn SA, Burkart MD, Boucher N, Noll KM, Osterman AL, Rodionov DA.

Environ Microbiol. 2013 Aug;15(8):2254-66. doi: 10.1111/1462-2920.12096. Epub 2013 Feb 27.

PMID:
23441918
18.

N-acetylgalactosamine utilization pathway and regulon in proteobacteria: genomic reconstruction and experimental characterization in Shewanella.

Leyn SA, Gao F, Yang C, Rodionov DA.

J Biol Chem. 2012 Aug 10;287(33):28047-56. doi: 10.1074/jbc.M112.382333. Epub 2012 Jun 18.

19.

Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex.

Ravcheev DA, Li X, Latif H, Zengler K, Leyn SA, Korostelev YD, Kazakov AE, Novichkov PS, Osterman AL, Rodionov DA.

J Bacteriol. 2012 Mar;194(5):1145-57. doi: 10.1128/JB.06412-11. Epub 2011 Dec 30.

20.

Ribulokinase and transcriptional regulation of arabinose metabolism in Clostridium acetobutylicum.

Zhang L, Leyn SA, Gu Y, Jiang W, Rodionov DA, Yang C.

J Bacteriol. 2012 Mar;194(5):1055-64. doi: 10.1128/JB.06241-11. Epub 2011 Dec 22.

21.

Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis.

Leyn SA, Li X, Zheng Q, Novichkov PS, Reed S, Romine MF, Fredrickson JK, Yang C, Osterman AL, Rodionov DA.

J Biol Chem. 2011 Oct 14;286(41):35782-94. doi: 10.1074/jbc.M111.267963. Epub 2011 Aug 17.

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