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Development of novel microsatellite markers for Alkanna tinctoria by comparative transcriptomics.

Ahmad M, Lazic D, Hansel-Hohl K, Lexer C, Sehr EM.

Appl Plant Sci. 2019 Oct 22;7(10):e11296. doi: 10.1002/aps3.11296. eCollection 2019 Oct.


The bracteatus pineapple genome and domestication of clonally propagated crops.

Chen LY, VanBuren R, Paris M, Zhou H, Zhang X, Wai CM, Yan H, Chen S, Alonge M, Ramakrishnan S, Liao Z, Liu J, Lin J, Yue J, Fatima M, Lin Z, Zhang J, Huang L, Wang H, Hwa TY, Kao SM, Choi JY, Sharma A, Song J, Wang L, Yim WC, Cushman JC, Paull RE, Matsumoto T, Qin Y, Wu Q, Wang J, Yu Q, Wu J, Zhang S, Boches P, Tung CW, Wang ML, Coppens d'Eeckenbrugge G, Sanewski GM, Purugganan MD, Schatz MC, Bennetzen JL, Lexer C, Ming R.

Nat Genet. 2019 Oct;51(10):1549-1558. doi: 10.1038/s41588-019-0506-8. Epub 2019 Sep 30.


Mating system variation in hybrid zones: facilitation, barriers and asymmetries to gene flow.

Pickup M, Brandvain Y, Fraïsse C, Yakimowski S, Barton NH, Dixit T, Lexer C, Cereghetti E, Field DL.

New Phytol. 2019 Nov;224(3):1035-1047. doi: 10.1111/nph.16180. Epub 2019 Oct 9.


Targeted Capture of Hundreds of Nuclear Genes Unravels Phylogenetic Relationships of the Diverse Neotropical Palm Tribe Geonomateae.

Loiseau O, Olivares I, Paris M, de La Harpe M, Weigand A, Koubínová D, Rolland J, Bacon CD, Balslev H, Borchsenius F, Cano A, Couvreur TLP, Delnatte C, Fardin F, Gayot M, Mejía F, Mota-Machado T, Perret M, Roncal J, Sanin MJ, Stauffer F, Lexer C, Kessler M, Salamin N.

Front Plant Sci. 2019 Jul 12;10:864. doi: 10.3389/fpls.2019.00864. eCollection 2019.


Admixture mapping in interspecific Populus hybrids identifies classes of genomic architectures for phytochemical, morphological and growth traits.

Bresadola L, Caseys C, Castiglione S, Buerkle CA, Wegmann D, Lexer C.

New Phytol. 2019 Sep;223(4):2076-2089. doi: 10.1111/nph.15930. Epub 2019 Jun 23.


A dedicated target capture approach reveals variable genetic markers across micro- and macro-evolutionary time scales in palms.

de La Harpe M, Hess J, Loiseau O, Salamin N, Lexer C, Paris M.

Mol Ecol Resour. 2019 Jan;19(1):221-234. doi: 10.1111/1755-0998.12945. Epub 2018 Nov 3.


Scale and direction of adaptive introgression between black cottonwood (Populus trichocarpa) and balsam poplar (P. balsamifera).

Suarez-Gonzalez A, Hefer CA, Lexer C, Cronk QCB, Douglas CJ.

Mol Ecol. 2018 Apr;27(7):1667-1680. doi: 10.1111/mec.14561. Epub 2018 Apr 17.


Adaptive introgression: a plant perspective.

Suarez-Gonzalez A, Lexer C, Cronk QCB.

Biol Lett. 2018 Mar;14(3). pii: 20170688. doi: 10.1098/rsbl.2017.0688. Review.


Introgression from Populus balsamifera underlies adaptively significant variation and range boundaries in P. trichocarpa.

Suarez-Gonzalez A, Hefer CA, Lexer C, Douglas CJ, Cronk QCB.

New Phytol. 2018 Jan;217(1):416-427. doi: 10.1111/nph.14779. Epub 2017 Nov 10.


Fluctuating selection across years and phenotypic variation in food-deceptive orchids.

Scopece G, Juillet N, Lexer C, Cozzolino S.

PeerJ. 2017 Aug 25;5:e3704. doi: 10.7717/peerj.3704. eCollection 2017.


Molecular ecology studies of species radiations: current research gaps, opportunities and challenges.

de la Harpe M, Paris M, Karger DN, Rolland J, Kessler M, Salamin N, Lexer C.

Mol Ecol. 2017 May;26(10):2608-2622. doi: 10.1111/mec.14110. Epub 2017 Apr 28. Review.


Advances in ecological genomics in forest trees and applications to genetic resources conservation and breeding.

Holliday JA, Aitken SN, Cooke JE, Fady B, González-Martínez SC, Heuertz M, Jaramillo-Correa JP, Lexer C, Staton M, Whetten RW, Plomion C.

Mol Ecol. 2017 Feb;26(3):706-717. doi: 10.1111/mec.13963. Epub 2017 Jan 27.


Causes and consequences of large clonal assemblies in a poplar hybrid zone.

Macaya-Sanz D, Heuertz M, Lindtke D, Vendramin GG, Lexer C, González-Martínez SC.

Mol Ecol. 2016 Nov;25(21):5330-5344. doi: 10.1111/mec.13850. Epub 2016 Oct 14.


Evolutionary potential in the Alpine: trait heritabilities and performance variation of the dwarf willow Salix herbacea from different elevations and microhabitats.

Sedlacek J, Cortés AJ, Wheeler J, Bossdorf O, Hoch G, Klápště J, Lexer C, Rixen C, Wipf S, Karrenberg S, van Kleunen M.

Ecol Evol. 2016 May 12;6(12):3940-52. doi: 10.1002/ece3.2171. eCollection 2016 Jun.


Adaptive evolution and segregating load contribute to the genomic landscape of divergence in two tree species connected by episodic gene flow.

Christe C, Stölting KN, Paris M, Fraїsse C, Bierne N, Lexer C.

Mol Ecol. 2017 Jan;26(1):59-76. doi: 10.1111/mec.13765. Epub 2016 Aug 26.


Selection against recombinant hybrids maintains reproductive isolation in hybridizing Populus species despite F1 fertility and recurrent gene flow.

Christe C, Stölting KN, Bresadola L, Fussi B, Heinze B, Wegmann D, Lexer C.

Mol Ecol. 2016 Jun;25(11):2482-98. doi: 10.1111/mec.13587. Epub 2016 Mar 28.


Genomic and functional approaches reveal a case of adaptive introgression from Populus balsamifera (balsam poplar) in P. trichocarpa (black cottonwood).

Suarez-Gonzalez A, Hefer CA, Christe C, Corea O, Lexer C, Cronk QC, Douglas CJ.

Mol Ecol. 2016 Jun;25(11):2427-42. doi: 10.1111/mec.13539. Epub 2016 Mar 14.


Mating system variation and assortative mating of sympatric bromeliads (Pitcairnia spp.) endemic to neotropical inselbergs.

Palma-Silva C, Cozzolino S, Paggi GM, Lexer C, Wendt T.

Am J Bot. 2015 May;102(5):758-64. doi: 10.3732/ajb.1400513. Epub 2015 May 21.


Effects of hybridization and evolutionary constraints on secondary metabolites: the genetic architecture of phenylpropanoids in European populus species.

Caseys C, Stritt C, Glauser G, Blanchard T, Lexer C.

PLoS One. 2015 May 26;10(5):e0128200. doi: 10.1371/journal.pone.0128200. eCollection 2015.


The Response of the Alpine Dwarf Shrub Salix herbacea to Altered Snowmelt Timing: Lessons from a Multi-Site Transplant Experiment.

Sedlacek J, Wheeler JA, Cortés AJ, Bossdorf O, Hoch G, Lexer C, Wipf S, Karrenberg S, van Kleunen M, Rixen C.

PLoS One. 2015 Apr 20;10(4):e0122395. doi: 10.1371/journal.pone.0122395. eCollection 2015.


Genome-wide patterns of differentiation and spatially varying selection between postglacial recolonization lineages of Populus alba (Salicaceae), a widespread forest tree.

Stölting KN, Paris M, Meier C, Heinze B, Castiglione S, Bartha D, Lexer C.

New Phytol. 2015 Aug;207(3):723-34. doi: 10.1111/nph.13392. Epub 2015 Mar 26.


Genomics of the divergence continuum in an African plant biodiversity hotspot, I: drivers of population divergence in Restio capensis (Restionaceae).

Lexer C, Wüest RO, Mangili S, Heuertz M, Stölting KN, Pearman PB, Forest F, Salamin N, Zimmermann NE, Bossolini E.

Mol Ecol. 2014 Sep;23(17):4373-86. doi: 10.1111/mec.12870. Epub 2014 Aug 18.


Unexpected ancestry of Populus seedlings from a hybrid zone implies a large role for postzygotic selection in the maintenance of species.

Lindtke D, Gompert Z, Lexer C, Buerkle CA.

Mol Ecol. 2014 Sep;23(17):4316-30. doi: 10.1111/mec.12759. Epub 2014 May 22.


Small-scale patterns in snowmelt timing affect gene flow and the distribution of genetic diversity in the alpine dwarf shrub Salix herbacea.

Cortés AJ, Waeber S, Lexer C, Sedlacek J, Wheeler JA, van Kleunen M, Bossdorf O, Hoch G, Rixen C, Wipf S, Karrenberg S.

Heredity (Edinb). 2014 Sep;113(3):233-9. doi: 10.1038/hdy.2014.19. Epub 2014 Mar 12.


Integrating the 'genomic mosaic' view of species into studies of biotic interactions: a comment on Bernhardsson et al. ().

Lexer C, Caseys C, Stritt C, Whitham TG.

Ecol Lett. 2013 Dec;16(12):1515-e7. doi: 10.1111/ele.12191. Epub 2013 Oct 18.


Effects of a fire response trait on diversification in replicated radiations.

Litsios G, Wüest RO, Kostikova A, Forest F, Lexer C, Linder HP, Pearman PB, Zimmermann NE, Salamin N.

Evolution. 2014 Feb;68(2):453-65. doi: 10.1111/evo.12273. Epub 2013 Oct 9.


Admixture mapping of quantitative traits in Populus hybrid zones: power and limitations.

Lindtke D, González-Martínez SC, Macaya-Sanz D, Lexer C.

Heredity (Edinb). 2013 Dec;111(6):474-85. doi: 10.1038/hdy.2013.69. Epub 2013 Jul 17.


Components of reproductive isolation between Orchis mascula and Orchis pauciflora.

Scopece G, Croce A, Lexer C, Cozzolino S.

Evolution. 2013 Jul;67(7):2083-93. doi: 10.1111/evo.12091. Epub 2013 Mar 29.


Differential introgression reveals candidate genes for selection across a spruce (Picea sitchensis × P. glauca) hybrid zone.

Hamilton JA, Lexer C, Aitken SN.

New Phytol. 2013 Feb;197(3):927-38. doi: 10.1111/nph.12055. Epub 2012 Dec 10.


Whole genome sequencing (WGS) meets biogeography and shows that genomic selection in forest trees is feasible.

Lexer C, Stölting KN.

New Phytol. 2012 Nov;196(3):652-4. doi: 10.1111/j.1469-8137.2012.04362.x. No abstract available.


Recombinant hybrids retain heterozygosity at many loci: new insights into the genomics of reproductive isolation in Populus.

Lindtke D, Buerkle CA, Barbará T, Heinze B, Castiglione S, Bartha D, Lexer C.

Mol Ecol. 2012 Oct;21(20):5042-58. doi: 10.1111/j.1365-294X.2012.05744.x. Epub 2012 Sep 18.


Genomic scan for single nucleotide polymorphisms reveals patterns of divergence and gene flow between ecologically divergent species.

Stölting KN, Nipper R, Lindtke D, Caseys C, Waeber S, Castiglione S, Lexer C.

Mol Ecol. 2013 Feb;22(3):842-55. doi: 10.1111/mec.12011. Epub 2012 Sep 11.


Genomic and phenotypic architecture of a spruce hybrid zone (Picea sitchensis × P. glauca).

Hamilton JA, Lexer C, Aitken SN.

Mol Ecol. 2013 Feb;22(3):827-41. doi: 10.1111/mec.12007. Epub 2012 Sep 12.


Trophic specialization influences the rate of environmental niche evolution in damselfishes (Pomacentridae).

Litsios G, Pellissier L, Forest F, Lexer C, Pearman PB, Zimmermann NE, Salamin N.

Proc Biol Sci. 2012 Sep 22;279(1743):3662-9. doi: 10.1098/rspb.2012.1140. Epub 2012 Jun 20.


Molecular phylogenetics of the Brazilian giant bromeliads (Alcantarea, Bromeliaceae): implications for morphological evolution and biogeography.

Versieux LM, Barbará T, Wanderley Md, Calvente A, Fay MF, Lexer C.

Mol Phylogenet Evol. 2012 Jul;64(1):177-89. doi: 10.1016/j.ympev.2012.03.015. Epub 2012 Apr 2.


Tracing the recombination and colonization history of hybrid species in space and time.

Lexer C, Stölting KN.

Mol Ecol. 2011 Sep;20(18):3701-4. doi: 10.1111/j.1365-294X.2011.05246.x.


Pollen-pistil interactions and self-incompatibility in the Asteraceae: new insights from studies of Senecio squalidus (Oxford ragwort).

Allen AM, Thorogood CJ, Hegarty MJ, Lexer C, Hiscock SJ.

Ann Bot. 2011 Sep;108(4):687-98. doi: 10.1093/aob/mcr147. Epub 2011 Jul 12. Review.


Sympatric bromeliad species (Pitcairnia spp.) facilitate tests of mechanisms involved in species cohesion and reproductive isolation in Neotropical inselbergs.

Palma-Silva C, Wendt T, Pinheiro F, Barbará T, Fay MF, Cozzolino S, Lexer C.

Mol Ecol. 2011 Aug;20(15):3185-201. doi: 10.1111/j.1365-294X.2011.05143.x. Epub 2011 Jun 15.


Genetic analysis of post-mating reproductive barriers in hybridizing European Populus species.

Macaya-Sanz D, Suter L, Joseph J, Barbará T, Alba N, González-Martínez SC, Widmer A, Lexer C.

Heredity (Edinb). 2011 Oct;107(5):478-86. doi: 10.1038/hdy.2011.35. Epub 2011 May 18.


Comparative analysis of pistil transcriptomes reveals conserved and novel genes expressed in dry, wet, and semidry stigmas.

Allen AM, Lexer C, Hiscock SJ.

Plant Physiol. 2010 Nov;154(3):1347-60. doi: 10.1104/pp.110.162172. Epub 2010 Sep 2.


Hybridization and introgression across different ploidy levels in the Neotropical orchids Epidendrum fulgens and E. puniceoluteum (Orchidaceae).

Pinheiro F, De Barros F, Palma-Silva C, Meyer D, Fay MF, Suzuki RM, Lexer C, Cozzolino S.

Mol Ecol. 2010 Sep;19(18):3981-94. doi: 10.1111/j.1365-294X.2010.04780.x. Epub 2010 Aug 27.


Genomic admixture analysis in European Populus spp. reveals unexpected patterns of reproductive isolation and mating.

Lexer C, Joseph JA, van Loo M, Barbará T, Heinze B, Bartha D, Castiglione S, Fay MF, Buerkle CA.

Genetics. 2010 Oct;186(2):699-712. doi: 10.1534/genetics.110.118828. Epub 2010 Aug 2.


Admixture facilitates adaptation from standing variation in the European aspen (Populus tremula L.), a widespread forest tree.

DE Carvalho D, Ingvarsson PK, Joseph J, Suter L, Sedivy C, Macaya-Sanz D, Cottrell J, Heinze B, Schanzer I, Lexer C.

Mol Ecol. 2010 Apr;19(8):1638-50. doi: 10.1111/j.1365-294X.2010.04595.x. Epub 2010 Mar 22.


Characterisation of sunflower-21 (SF21) genes expressed in pollen and pistil of Senecio squalidus (Asteraceae) and their relationship with other members of the SF21 gene family.

Allen AM, Lexer C, Hiscock SJ.

Sex Plant Reprod. 2010 Sep;23(3):173-86. doi: 10.1007/s00497-010-0137-9. Epub 2010 Feb 25.


Range-wide patterns of nuclear and chloroplast DNA diversity in Vriesea gigantea (Bromeliaceae), a neotropical forest species.

Palma-Silva C, Lexer C, Paggi GM, Barbará T, Bered F, Bodanese-Zanettini MH.

Heredity (Edinb). 2009 Dec;103(6):503-12. doi: 10.1038/hdy.2009.116. Epub 2009 Sep 9.


How sympatric is speciation in the Howea palms of Lord Howe Island?

Babik W, Butlin RK, Baker WJ, Papadopulos AS, Boulesteix M, Anstett MC, Lexer C, Hutton I, Savolainen V.

Mol Ecol. 2009 Sep;18(17):3629-38. doi: 10.1111/j.1365-294X.2009.04306.x. Epub 2009 Aug 10.


Genetic diversity in Cypripedium calceolus (Orchidaceae) with a focus on north-western Europe, as revealed by plastid DNA length polymorphisms.

Fay MF, Bone R, Cook P, Kahandawala I, Greensmith J, Harris S, Pedersen HA, Ingrouille MJ, Lexer C.

Ann Bot. 2009 Aug;104(3):517-25. doi: 10.1093/aob/mcp116. Epub 2009 May 19.


Admixture as the basis for genetic mapping.

Buerkle CA, Lexer C.

Trends Ecol Evol. 2008 Dec;23(12):686-94. doi: 10.1016/j.tree.2008.07.008. Epub 2008 Oct 8. Review.


Isolation and characterization of microsatellite loci in Pitcairnia albiflos (Bromeliaceae), an endemic bromeliad from the Atlantic Rainforest, and cross-amplification in other species.

Paggi GM, Palma-Silva C, Bered F, Cidade FW, Sousa AC, Souza AP, Wendt T, Lexer C.

Mol Ecol Resour. 2008 Sep;8(5):980-2. doi: 10.1111/j.1755-0998.2008.02126.x. Epub 2008 Jun 28.


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