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Items: 32


Transcription factor Znf2 coordinates with the chromatin remodeling SWI/SNF complex to regulate cryptococcal cellular differentiation.

Lin J, Zhao Y, Ferraro AR, Yang E, Lewis ZA, Lin X.

Commun Biol. 2019 Nov 14;2:412. doi: 10.1038/s42003-019-0665-2. eCollection 2019.


Dectin-2-Targeted Antifungal Liposomes Exhibit Enhanced Efficacy.

Ambati S, Ellis EC, Lin J, Lin X, Lewis ZA, Meagher RB.

mSphere. 2019 Oct 30;4(5). pii: e00715-19. doi: 10.1128/mSphere.00715-19.


DNA Methylation: Shared and Divergent Features across Eukaryotes.

Schmitz RJ, Lewis ZA, Goll MG.

Trends Genet. 2019 Nov;35(11):818-827. doi: 10.1016/j.tig.2019.07.007. Epub 2019 Aug 6. Review.


The maternal to zygotic transition regulates genome-wide heterochromatin establishment in the zebrafish embryo.

Laue K, Rajshekar S, Courtney AJ, Lewis ZA, Goll MG.

Nat Commun. 2019 Apr 4;10(1):1551. doi: 10.1038/s41467-019-09582-3.


Erratum for Ambati et al., "Dectin-1-Targeted Antifungal Liposomes Exhibit Enhanced Efficacy".

Ambati S, Ferarro AR, Kang SE, Lin J, Lin X, Momany M, Lewis ZA, Meagher RB.

mSphere. 2019 Mar 6;4(2). pii: e00121-19. doi: 10.1128/mSphere.00121-19. No abstract available.


Dectin-1-Targeted Antifungal Liposomes Exhibit Enhanced Efficacy.

Ambati S, Ferarro AR, Kang SE, Lin J, Lin X, Momany M, Lewis ZA, Meagher RB.

mSphere. 2019 Feb 13;4(1). pii: e00025-19. doi: 10.1128/mSphere.00025-19. Erratum in: mSphere. 2019 Mar 6;4(2):.


ChIP-Seq Analysis in Neurospora crassa.

Ferraro AR, Lewis ZA.

Methods Mol Biol. 2018;1775:241-250. doi: 10.1007/978-1-4939-7804-5_19.


Polycomb Group Systems in Fungi: New Models for Understanding Polycomb Repressive Complex 2.

Lewis ZA.

Trends Genet. 2017 Mar;33(3):220-231. doi: 10.1016/j.tig.2017.01.006. Epub 2017 Feb 11. Review.


KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans.

Gacek-Matthews A, Berger H, Sasaki T, Wittstein K, Gruber C, Lewis ZA, Strauss J.

PLoS Genet. 2016 Aug 22;12(8):e1006222. doi: 10.1371/journal.pgen.1006222. eCollection 2016 Aug.


Histone H1 Limits DNA Methylation in Neurospora crassa.

Seymour M, Ji L, Santos AM, Kamei M, Sasaki T, Basenko EY, Schmitz RJ, Zhang X, Lewis ZA.

G3 (Bethesda). 2016 Jul 7;6(7):1879-89. doi: 10.1534/g3.116.028324.


The LSH/DDM1 Homolog MUS-30 Is Required for Genome Stability, but Not for DNA Methylation in Neurospora crassa.

Basenko EY, Kamei M, Ji L, Schmitz RJ, Lewis ZA.

PLoS Genet. 2016 Jan 15;12(1):e1005790. doi: 10.1371/journal.pgen.1005790. eCollection 2016 Jan.


Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth.

Basenko EY, Sasaki T, Ji L, Prybol CJ, Burckhardt RM, Schmitz RJ, Lewis ZA.

Proc Natl Acad Sci U S A. 2015 Nov 17;112(46):E6339-48. doi: 10.1073/pnas.1511377112. Epub 2015 Nov 2.


Methylated DNA is over-represented in whole-genome bisulfite sequencing data.

Ji L, Sasaki T, Sun X, Ma P, Lewis ZA, Schmitz RJ.

Front Genet. 2014 Oct 21;5:341. doi: 10.3389/fgene.2014.00341. eCollection 2014.


The cullin-4 complex DCDC does not require E3 ubiquitin ligase elements to control heterochromatin in Neurospora crassa.

Adhvaryu KK, Gessaman JD, Honda S, Lewis ZA, Grisafi PL, Selker EU.

Eukaryot Cell. 2015 Jan;14(1):25-8. doi: 10.1128/EC.00212-14. Epub 2014 Oct 31.


Heterochromatin controls γH2A localization in Neurospora crassa.

Sasaki T, Lynch KL, Mueller CV, Friedman S, Freitag M, Lewis ZA.

Eukaryot Cell. 2014 Aug;13(8):990-1000. doi: 10.1128/EC.00117-14. Epub 2014 May 30.


Regional control of histone H3 lysine 27 methylation in Neurospora.

Jamieson K, Rountree MR, Lewis ZA, Stajich JE, Selker EU.

Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):6027-32. doi: 10.1073/pnas.1303750110. Epub 2013 Mar 25.


Heterochromatin protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation.

Honda S, Lewis ZA, Shimada K, Fischle W, Sack R, Selker EU.

Nat Struct Mol Biol. 2012 Apr 15;19(5):471-7, S1. doi: 10.1038/nsmb.2274.


CHD1 remodels chromatin and influences transient DNA methylation at the clock gene frequency.

Belden WJ, Lewis ZA, Selker EU, Loros JJ, Dunlap JC.

PLoS Genet. 2011 Jul;7(7):e1002166. doi: 10.1371/journal.pgen.1002166. Epub 2011 Jul 21.


DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferase complex, DCDC.

Lewis ZA, Adhvaryu KK, Honda S, Shiver AL, Knip M, Sack R, Selker EU.

PLoS Genet. 2010 Nov 4;6(11):e1001196. doi: 10.1371/journal.pgen.1001196.


Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi.

Lee HC, Li L, Gu W, Xue Z, Crosthwaite SK, Pertsemlidis A, Lewis ZA, Freitag M, Selker EU, Mello CC, Liu Y.

Mol Cell. 2010 Jun 25;38(6):803-14. doi: 10.1016/j.molcel.2010.04.005. Epub 2010 Apr 22.


Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin.

Lewis ZA, Adhvaryu KK, Honda S, Shiver AL, Selker EU.

Proc Natl Acad Sci U S A. 2010 May 4;107(18):8310-5. doi: 10.1073/pnas.1000328107. Epub 2010 Apr 19.


The DMM complex prevents spreading of DNA methylation from transposons to nearby genes in Neurospora crassa.

Honda S, Lewis ZA, Huarte M, Cho LY, David LL, Shi Y, Selker EU.

Genes Dev. 2010 Mar 1;24(5):443-54. doi: 10.1101/gad.1893210. Epub 2010 Feb 5.


Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa.

Lewis ZA, Honda S, Khlafallah TK, Jeffress JK, Freitag M, Mohn F, Schübeler D, Selker EU.

Genome Res. 2009 Mar;19(3):427-37. doi: 10.1101/gr.086231.108. Epub 2008 Dec 17.


Rapid SNP discovery and genetic mapping using sequenced RAD markers.

Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, Lewis ZA, Selker EU, Cresko WA, Johnson EA.

PLoS One. 2008;3(10):e3376. doi: 10.1371/journal.pone.0003376. Epub 2008 Oct 13.


High-density detection of restriction-site-associated DNA markers for rapid mapping of mutated loci in Neurospora.

Lewis ZA, Shiver AL, Stiffler N, Miller MR, Johnson EA, Selker EU.

Genetics. 2007 Oct;177(2):1163-71. Epub 2007 Jul 29.


Two circadian timing circuits in Neurospora crassa cells share components and regulate distinct rhythmic processes.

de Paula RM, Lewis ZA, Greene AV, Seo KS, Morgan LW, Vitalini MW, Bennett L, Gomer RH, Bell-Pedersen D.

J Biol Rhythms. 2006 Jun;21(3):159-68.


Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa.

Xie X, Wilkinson HH, Correa A, Lewis ZA, Bell-Pedersen D, Ebbole DJ.

Fungal Genet Biol. 2004 Dec;41(12):1104-19.


Multiple oscillators regulate circadian gene expression in Neurospora.

Correa A, Lewis ZA, Greene AV, March IJ, Gomer RH, Bell-Pedersen D.

Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13597-602. Epub 2003 Nov 3.


Overexpression of White Collar-1 (WC-1) activates circadian clock-associated genes, but is not sufficient to induce most light-regulated gene expression in Neurospora crassa.

Lewis ZA, Correa A, Schwerdtfeger C, Link KL, Xie X, Gomer RH, Thomas T, Ebbole DJ, Bell-Pedersen D.

Mol Microbiol. 2002 Aug;45(4):917-31.


vvd is required for light adaptation of conidiation-specific genes of Neurospora crassa, but not circadian conidiation.

Shrode LB, Lewis ZA, White LD, Bell-Pedersen D, Ebbole DJ.

Fungal Genet Biol. 2001 Apr;32(3):169-81.


Assay, isolation and characterization of circulating immune complexes from serum of gastrointestinal cancer, stage III and IV melanoma and chronic inflammatory bowel disease patients.

Bartoloni C, Guidi L, Pili R, Lewis ZA, Tricerri A, Cursi F, Gentiloni N, Cortesi E, Gambassi G.

Oncology. 1993;50(1):27-34.


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